Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_010266 Vanilla planifolia HOM05D002201 ORTHO05D007560 5.0e-91 337.8 175 100.0
HPP92_010259 Vanilla planifolia HOM05D002201 ORTHO05D007560 2.2e-62 242.7 137 95.6
HPP92_010261 Vanilla planifolia HOM05D002201 ORTHO05D007560 2.2e-62 242.7 137 95.6
HPP92_010264 Vanilla planifolia HOM05D002201 ORTHO05D007560 3.7e-62 241.9 137 94.9
HPP92_010273 Vanilla planifolia HOM05D002201 ORTHO05D007560 2.9e-59 232.3 137 92.0
HPP92_010105 Vanilla planifolia HOM05D002201 ORTHO05D007560 1.4e-53 213.4 137 87.6
MBI16_g33830_MAGBIO Magnolia biondii HOM05D002201 ORTHO05D007560 3.5e-20 102.4 155 41.3
TAR629G2041 Trochodendron aralioides HOM05D002201 ORTHO05D007560 3.9e-19 99.0 155 39.4
PSO063G3066 Papaver somniferum HOM05D002201 ORTHO05D007560 2.5e-18 96.3 155 38.7
CANSAT64G2925 Cannabis sativa HOM05D002201 ORTHO05D007560 2.1e-17 93.2 128 41.4
PGR119G1960 Punica granatum HOM05D002201 ORTHO05D007560 2.1e-17 93.2 132 39.4
Nn4g23699 Nelumbo nucifera HOM05D002201 ORTHO05D007560 3.6e-17 92.4 128 44.5
Manes.06G073300 Manihot esculenta HOM05D002201 ORTHO05D007560 8.1e-17 91.3 155 38.7
Manes.14G096500 Manihot esculenta HOM05D002201 ORTHO05D007560 1.1e-16 90.9 128 43.8
Atru.chr11.1374 Acer truncatum HOM05D002201 ORTHO05D007560 1.4e-16 90.5 128 43.0
arahy.Tifrunner.gnm1.ann1.D2MQ0U Arachis hypogaea HOM05D002201 ORTHO05D007560 1.8e-16 90.1 128 41.4
Peaxi162Scf00367g00735 Petunia axillaris HOM05D002201 ORTHO05D007560 1.8e-16 90.1 144 41.7
CiPaw.15G002600 Carya illinoinensis HOM05D002201 ORTHO05D007560 3.1e-16 89.4 128 39.8
arahy.Tifrunner.gnm1.ann1.60XZVP Arachis hypogaea HOM05D002201 ORTHO05D007560 5.2e-16 88.6 128 40.6
Cfa018644 Carpinus fangiana HOM05D002201 ORTHO05D007560 5.2e-16 88.6 171 32.2
Lj3C1021T1 Lonicera japonica HOM05D002201 ORTHO05D007560 5.2e-16 88.6 155 36.8
Cpa.g.c29023.2 Carica papaya HOM05D002201 ORTHO05D007560 6.8e-16 88.2 132 37.1
QL01p001010 Quercus lobata HOM05D002201 ORTHO05D007560 6.8e-16 88.2 155 36.1
Aqoxy3G03893 Aquilegia oxysepala HOM05D002201 ORTHO05D007560 8.9e-16 87.8 180 34.4
COL.COLO4_07858 Corchorus olitorius HOM05D000566 ORTHO05D000686 2.0e-15 86.7 155 35.5
CAN.G184.77 Capsicum annuum HOM05D002201 ORTHO05D007560 3.4e-15 85.9 134 40.3
Cc11_g10720 Coffea canephora HOM05D002201 ORTHO05D007560 3.4e-15 85.9 155 35.5
Prupe.1G304100 Prunus persica HOM05D002201 ORTHO05D007560 3.4e-15 85.9 128 39.8
Ca_05686_v3 Cicer arietinum L. HOM05D002201 ORTHO05D007560 4.4e-15 85.5 133 39.1
Dinv05805 Davidia involucrata HOM05D002201 ORTHO05D007560 4.4e-15 85.5 127 40.9
Lalb_Chr17g0341861 Lupinus albus HOM05D002201 ORTHO05D007560 4.4e-15 85.5 128 39.1
Haze_17425 Corylus avellana HOM05D002201 ORTHO05D007560 5.8e-15 85.1 128 38.3
Duzib248G1574 Durio zibethinus HOM05D002201 ORTHO05D007560 9.9e-15 84.3 128 38.3
Phvul.003G026000 Phaseolus vulgaris HOM05D002201 ORTHO05D007560 9.9e-15 84.3 128 37.5
THA.LOC104825717 Tarenaya hassleriana HOM05D002201 ORTHO05D007560 9.9e-15 84.3 128 39.1
GSVIVG01011967001 Vitis vinifera HOM05D002201 ORTHO05D007560 9.9e-15 84.3 155 37.4
MSTRG.13500 Avicennia marina HOM05D002201 ORTHO05D007560 1.3e-14 84.0 155 34.8
CSS0023752 Camellia sinensis var. sinensis HOM05D000566 ORTHO05D000686 1.3e-14 84.0 128 40.6
Thhalv10003928m.g Eutrema salsugineum HOM05D002201 ORTHO05D007560 1.7e-14 83.6 128 38.3
Lj2g0021982 Lotus japonicus HOM05D002201 ORTHO05D007560 1.7e-14 83.6 128 41.4
VMungo1215G1906 Vigna mungo HOM05D002201 ORTHO05D007560 1.7e-14 83.6 128 38.3
ECA233G2653 Erigeron canadensis HOM05D002201 ORTHO05D007560 2.2e-14 83.2 128 39.8
FvH4_4g28210 Fragaria vesca HOM05D002201 ORTHO05D007560 2.2e-14 83.2 128 39.1
HanXRQChr12g0365331 Helianthus annuus HOM05D002201 ORTHO05D007560 2.2e-14 83.2 128 39.1
Hma1.2p1_0862F.1_g229850 Hydrangea macrophylla HOM05D002201 ORTHO05D007560 2.2e-14 83.2 128 39.1
Ciclev10031108m.g Citrus clementina HOM05D002201 ORTHO05D007560 2.9e-14 82.8 128 42.2
FAN12G2404 Fragaria x ananassa HOM05D002201 ORTHO05D007560 2.9e-14 82.8 128 39.1
FAN17G2361 Fragaria x ananassa HOM05D002201 ORTHO05D007560 2.9e-14 82.8 128 38.3
Thecc.02G362600 Theobroma cacao HOM05D002201 ORTHO05D007560 2.9e-14 82.8 155 33.5
TPR.G2697 Trifolium pratense HOM05D002201 ORTHO05D007560 2.9e-14 82.8 128 40.6
Glyma.02G101200 Glycine max HOM05D002201 ORTHO05D007560 3.7e-14 82.4 128 39.1
Potri.010G131000 Populus trichocarpa HOM05D002201 ORTHO05D007560 3.7e-14 82.4 155 33.5
AT3G25680 Arabidopsis thaliana HOM05D002201 ORTHO05D007560 4.9e-14 82.0 128 36.7
Oeu024102.2 Olea europaea HOM05D002201 ORTHO05D007560 4.9e-14 82.0 155 34.8
SalBow8G3742 Salvia bowleyana HOM05D002201 ORTHO05D007560 4.9e-14 82.0 155 35.5
FAN07G1361 Fragaria x ananassa HOM05D002201 ORTHO05D007560 8.4e-14 81.3 128 38.3
Gohir.D12G174400 Gossypium hirsutum HOM05D002201 ORTHO05D007560 8.4e-14 81.3 155 32.3
Gorai.008G187100 Gossypium raimondii HOM05D002201 ORTHO05D007560 8.4e-14 81.3 155 32.3
Eucgr.G02358 Eucalyptus grandis HOM05D002201 ORTHO05D007560 1.1e-13 80.9 128 38.3
MD16G1049600 Malus domestica HOM05D002201 ORTHO05D007560 1.1e-13 80.9 137 35.0
Hund25106 Selenicereus undatus HOM05D002201 ORTHO05D007560 1.1e-13 80.9 123 40.7
Actinidia38400 Actinidia chinensis HOM05D002201 ORTHO05D007560 1.4e-13 80.5 127 38.6
Glyma.01G089500 Glycine max HOM05D002201 ORTHO05D007560 1.4e-13 80.5 129 38.8
ClCG05G023090 Citrullus lanatus HOM05D002201 ORTHO05D007560 1.9e-13 80.1 128 35.2
BcaB07g30634 Brassica carinata HOM05D002201 ORTHO05D007560 3.2e-13 79.3 155 33.5
A09p24930 Brassica napus HOM05D002201 ORTHO05D007560 4.1e-13 79.0 155 34.8
BraA09t38081Z Brassica rapa HOM05D002201 ORTHO05D007560 4.1e-13 79.0 155 34.8
Carub.0005s0350 Capsella rubella HOM05D002201 ORTHO05D007560 4.1e-13 79.0 128 36.7
Sed0021770 Sechium edule HOM05D000566 ORTHO05D000686 4.1e-13 79.0 123 35.8
Sc04g0006800 Simmondsia chinensis HOM05D002201 ORTHO05D007560 4.1e-13 79.0 155 34.8
PGSC0003DMG400000804 Solanum tuberosum HOM05D002201 ORTHO05D007560 4.1e-13 79.0 128 38.3
TWI75G0366 Tripterygium wilfordii HOM05D002201 ORTHO05D007560 4.1e-13 79.0 155 34.2
Medtr5g053260 Medicago truncatula HOM05D002201 ORTHO05D007560 5.4e-13 78.6 128 39.1
Sp2g14940 Schrenkiella parvula HOM05D002201 ORTHO05D007560 5.4e-13 78.6 128 36.7
BcaC04g21422 Brassica carinata HOM05D002201 ORTHO05D007560 9.2e-13 77.8 155 32.9
C09p31960 Brassica napus HOM05D002201 ORTHO05D007560 9.2e-13 77.8 155 32.9
BolC9t56050H Brassica oleracea HOM05D002201 ORTHO05D007560 9.2e-13 77.8 155 32.9
AL5G14220 Arabidopsis lyrata HOM05D002201 ORTHO05D007560 1.2e-12 77.4 134 36.6
Lalb_Chr04g0254971 Lupinus albus HOM05D002201 ORTHO05D007560 1.2e-12 77.4 128 36.7
Gohir.A12G172000 Gossypium hirsutum HOM05D002201 ORTHO05D007560 1.6e-12 77.0 155 31.0
Solyc05g009940.4 Solanum lycopersicum HOM05D002201 ORTHO05D007560 1.6e-12 77.0 134 38.8
CDE10G0618 Ceratophyllum demersum HOM05D002201 ORTHO05D007560 2.1e-12 76.6 170 31.8
RcHm_v2.0_Chr4g0435981 Rosa chinensis HOM05D002201 ORTHO05D007560 2.1e-12 76.6 128 37.5
Psat2g090640 Pisum sativum HOM05D002201 ORTHO05D007560 2.7e-12 76.3 128 38.3
Rhsim12G0080800 Rhododendron simsii HOM05D002201 ORTHO05D007560 3.5e-12 75.9 155 34.8
Sabra10G0099800 Salix brachista HOM05D002201 ORTHO05D007560 3.5e-12 75.9 155 32.3
Sopen05g005750 Solanum pennellii HOM05D002201 ORTHO05D007560 3.5e-12 75.9 134 38.1
Zm00001eb281400 Zea mays HOM05D002201 ORTHO05D007560 6.0e-12 75.1 140 35.0
Migut.E00290 Erythranthe guttata HOM05D002201 ORTHO05D007560 7.8e-12 74.7 154 33.8
ATR0053G012 Amborella trichopoda HOM05D002201 ORTHO05D007560 1.0e-11 74.3 119 40.3
Lsat_1_v5_gn_8_37461 Lactuca sativa HOM05D002201 ORTHO05D007560 1.0e-11 74.3 127 38.6
MELO3C012208.2 Cucumis melo HOM05D002201 ORTHO05D007560 2.3e-11 73.2 110 37.3
MD13G1047900 Malus domestica HOM05D002201 ORTHO05D007560 2.3e-11 73.2 128 35.9
SGA_v2.0_scaffold14G06814 Striga asiatica HOM05D002201 ORTHO05D007560 3.9e-11 72.4 155 32.3
Actinidia13681 Actinidia chinensis HOM05D002201 ORTHO05D007560 5.1e-11 72.0 155 32.9
AUR62002931 Chenopodium quinoa HOM05D002201 ORTHO05D007560 6.6e-11 71.6 155 33.5
AUR62007741 Chenopodium quinoa HOM05D002201 ORTHO05D007560 8.6e-11 71.2 155 33.5
vmacro01361 Vaccinium macrocarpon HOM05D002201 ORTHO05D007560 1.1e-10 70.9 155 34.2
Aa31LG2G6630 Aethionema arabicum HOM05D002201 ORTHO05D007560 1.5e-10 70.5 121 36.4
CsaV3_5G033900 Cucumis sativus L. HOM05D002201 ORTHO05D007560 1.5e-10 70.5 109 34.9
EL10Ac6g14517 Beta vulgaris HOM05D002201 ORTHO05D007560 4.7e-09 65.5 155 30.3
TWI79G0162 Tripterygium wilfordii HOM05D002201 ORTHO05D007560 3.1e-08 62.8 90 40.0
Aa31LG1G6710 Aethionema arabicum HOM05D002201 ORTHO05D007560 2.6e-07 59.7 112 33.9


User provided reference genes

Program Settings