Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 6.9e-292 1006.5 486 100.0
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 7.6e-198 694.1 471 70.5
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 2.2e-197 692.6 412 76.9
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 2.9e-197 692.2 425 75.3
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 9.2e-196 687.2 476 70.0
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 2.1e-195 686.0 463 71.9
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 4.6e-195 684.9 417 75.8
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 7.8e-195 684.1 417 76.7
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 3.9e-194 681.8 455 71.6
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 5.1e-194 681.4 432 74.3
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 6.6e-194 681.0 425 74.1
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 8.6e-194 680.6 461 71.1
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 1.1e-193 680.2 435 73.6
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.5e-193 679.9 419 75.2
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.5e-193 679.9 419 75.2
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 3.3e-193 678.7 410 76.8
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 3.3e-193 678.7 475 69.1
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 5.6e-193 677.9 431 74.0
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 5.6e-193 677.9 485 69.5
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 2.1e-192 676.0 438 73.5
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 2.1e-192 676.0 408 76.5
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 3.6e-192 675.2 429 73.2
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 3.6e-192 675.2 434 74.0
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 4.7e-192 674.9 465 68.2
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 6.2e-192 674.5 409 76.0
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 6.2e-192 674.5 462 71.2
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 8.1e-192 674.1 449 72.2
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 1.1e-191 673.7 454 70.0
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 1.8e-191 672.9 459 69.7
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 1.8e-191 672.9 438 72.6
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 1.8e-191 672.9 454 70.3
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 2.4e-191 672.5 428 72.9
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 3.1e-191 672.2 466 70.4
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 3.1e-191 672.2 458 70.7
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 5.2e-191 671.4 471 67.7
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 5.2e-191 671.4 476 68.3
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 6.9e-191 671.0 472 67.4
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 8.9e-191 670.6 452 71.9
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.2e-190 670.2 467 69.8
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 1.2e-190 670.2 440 73.0
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 1.5e-190 669.8 429 73.4
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 4.4e-190 668.3 428 72.4
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 4.4e-190 668.3 457 69.6
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 4.4e-190 668.3 472 68.0
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 4.4e-190 668.3 462 69.0
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 4.4e-190 668.3 440 73.2
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 7.6e-190 667.5 429 73.0
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 1.7e-189 666.4 474 68.6
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 2.2e-189 666.0 472 67.6
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 2.2e-189 666.0 441 71.7
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 4.9e-189 664.8 471 67.7
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 4.9e-189 664.8 429 72.3
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 8.4e-189 664.1 432 72.0
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 1.1e-188 663.7 492 66.7
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 1.9e-188 662.9 433 71.4
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 1.9e-188 662.9 445 71.7
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 3.2e-188 662.1 447 69.8
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 4.2e-188 661.8 472 67.4
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 5.4e-188 661.4 473 68.5
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 5.4e-188 661.4 440 72.3
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 1.6e-187 659.8 481 68.0
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 1.6e-187 659.8 462 68.4
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 1.6e-187 659.8 419 74.2
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 1.6e-187 659.8 464 68.8
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 3.5e-187 658.7 400 76.8
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 1.7e-186 656.4 476 66.2
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 1.7e-186 656.4 464 68.3
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 2.3e-186 656.0 400 75.5
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 5.1e-186 654.8 466 69.3
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 6.6e-186 654.4 464 69.4
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 1.1e-185 653.7 432 72.9
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 1.9e-185 652.9 476 66.0
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 1.9e-185 652.9 476 66.0
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 5.6e-185 651.4 469 68.4
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 2.8e-184 649.0 394 76.9
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.8e-183 646.4 403 75.4
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 1.8e-183 646.4 430 71.4
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 6.9e-183 644.4 483 66.7
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 2.0e-182 642.9 493 66.1
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 2.9e-181 639.0 455 68.6
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 2.4e-180 636.0 445 68.8
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 7.1e-180 634.4 418 71.5
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 2.7e-179 632.5 474 66.2
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 6.0e-179 631.3 481 64.9
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 3.9e-178 628.6 451 67.8
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 4.3e-177 625.2 462 65.8
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 8.1e-176 620.9 462 66.0
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 2.9e-173 612.5 379 74.7
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 1.4e-172 610.1 442 66.7
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 6.7e-170 601.3 477 62.9
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 2.8e-168 595.9 456 64.3
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 8.1e-168 594.3 462 63.9
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.4e-167 593.6 359 74.9
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 4.3e-161 572.0 358 72.3
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 6.1e-155 551.6 597 51.3
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 7.9e-155 551.2 486 57.4
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 1.3e-152 543.9 371 70.6
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 2.0e-150 536.6 403 65.8
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 3.1e-143 512.7 465 56.6
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 2.2e-141 506.5 431 58.5
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 2.5e-140 503.1 437 58.6
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 7.9e-139 498.0 349 66.2
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 3.3e-137 492.7 382 61.3
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 4.1e-135 485.7 415 57.1
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 5.3e-135 485.3 368 62.2
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 4.1e-127 459.1 272 79.0
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 5.3e-127 458.8 262 80.5
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 7.5e-121 438.3 494 51.0
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 1.0e-114 417.9 276 71.7
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 3.0e-114 416.4 290 71.7
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 5.2e-114 415.6 438 49.5
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.0e-113 413.7 322 64.0
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 7.0e-111 405.2 377 54.6
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 2.0e-110 403.7 247 74.1
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 3.4e-105 386.3 377 52.3
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 6.4e-104 382.1 318 61.0
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 2.1e-99 367.1 534 40.8
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 5.8e-97 359.0 235 71.1
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 7.1e-87 325.5 402 44.3
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 4.4e-81 306.2 223 66.4
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 1.2e-70 271.6 199 64.3
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 1.3e-69 268.1 175 69.7
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 4.5e-65 253.1 189 67.7
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 4.6e-54 216.5 139 71.2
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 5.6e-52 209.5 184 55.4
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 2.8e-51 207.2 315 37.8
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 2.4e-50 204.1 178 55.6
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 2.6e-49 200.7 359 35.1
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 2.6e-49 200.7 404 33.7
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 2.5e-47 194.1 184 52.7
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 8.7e-45 185.7 204 52.5
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 6.9e-42 176.0 112 69.6
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 1.2e-41 175.3 333 34.8
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 1.5e-41 174.9 399 31.1
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.2e-38 165.2 115 67.0
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 3.6e-38 163.7 349 33.0
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 4.5e-33 146.7 130 61.5
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 1.1e-31 142.1 74 82.4
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 5.5e-23 113.2 106 50.0
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.6e-22 111.7 93 59.1
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 2.1e-22 111.3 117 53.8
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 2.6e-20 104.4 113 53.1
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 2.8e-19 100.9 253 32.8
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 7.0e-18 96.3 99 50.5
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 4.0e-13 80.5 84 56.0
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 5.9e-09 66.6 152 31.6
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 7.7e-09 66.2 218 28.4
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 5.5e-07 60.1 38 78.9
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 7.2e-07 59.7 28 89.3


User provided reference genes

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