Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 9.7e-112 406.8 196 100.0
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 1.7e-55 219.9 180 62.2
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 2.3e-52 209.5 172 59.9
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 1.5e-51 206.8 152 66.4
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 1.2e-50 203.8 174 56.9
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 1.6e-50 203.4 175 59.4
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 1.4e-49 200.3 140 65.7
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 4.0e-49 198.7 139 67.6
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 4.0e-49 198.7 138 68.1
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 5.3e-49 198.4 157 59.9
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 1.2e-48 197.2 140 65.0
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 1.2e-48 197.2 180 55.0
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 2.6e-48 196.1 139 66.2
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 3.4e-48 195.7 174 55.2
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 4.4e-48 195.3 145 65.5
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 4.4e-48 195.3 145 64.8
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 5.8e-48 194.9 175 58.9
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 5.8e-48 194.9 178 56.2
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 1.3e-47 193.7 140 62.9
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.3e-47 193.7 145 64.1
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 1.3e-47 193.7 130 67.7
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 1.7e-47 193.4 149 63.1
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 1.7e-47 193.4 142 64.8
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 1.7e-47 193.4 144 63.2
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 1.7e-47 193.4 144 63.2
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 2.9e-47 192.6 145 62.8
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 2.9e-47 192.6 145 64.1
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 2.9e-47 192.6 148 61.5
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 2.9e-47 192.6 140 63.6
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 3.8e-47 192.2 144 60.4
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 3.8e-47 192.2 126 69.0
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 4.9e-47 191.8 187 56.7
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 4.9e-47 191.8 144 61.8
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 4.9e-47 191.8 184 53.8
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 6.4e-47 191.4 150 59.3
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 8.4e-47 191.0 175 58.3
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 8.4e-47 191.0 174 54.6
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 2.4e-46 189.5 140 62.9
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 4.2e-46 188.7 156 60.3
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 7.1e-46 188.0 158 59.5
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 7.1e-46 188.0 149 64.4
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 9.3e-46 187.6 182 55.5
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 3.5e-45 185.7 182 54.9
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 4.6e-45 185.3 139 62.6
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 4.6e-45 185.3 118 73.7
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 6.0e-45 184.9 150 61.3
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 1.0e-44 184.1 160 58.8
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.0e-44 184.1 182 53.8
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.3e-44 183.7 142 62.0
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 1.3e-44 183.7 141 62.4
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 1.7e-44 183.3 155 58.7
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 2.3e-44 183.0 140 60.0
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 3.9e-44 182.2 137 66.4
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 5.1e-44 181.8 155 58.7
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 6.6e-44 181.4 155 57.4
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 8.7e-44 181.0 160 57.5
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 8.7e-44 181.0 145 60.7
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 1.5e-43 180.3 160 57.5
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 1.5e-43 180.3 140 60.0
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 1.5e-43 180.3 145 60.7
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 1.9e-43 179.9 141 63.8
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 3.3e-43 179.1 160 56.2
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 3.3e-43 179.1 149 58.4
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 4.3e-43 178.7 136 61.8
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 4.3e-43 178.7 150 56.7
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 5.6e-43 178.3 150 56.7
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 5.6e-43 178.3 117 68.4
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 7.3e-43 177.9 149 59.7
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 7.3e-43 177.9 149 59.7
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 7.3e-43 177.9 149 59.7
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 7.3e-43 177.9 149 59.7
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 7.3e-43 177.9 149 59.7
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 7.3e-43 177.9 136 61.8
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 3.6e-42 175.6 135 62.2
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 4.8e-42 175.3 145 58.6
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 1.8e-41 173.3 135 62.2
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 2.4e-41 172.9 147 57.8
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 3.1e-41 172.6 135 62.2
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 5.3e-41 171.8 145 57.2
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 6.9e-41 171.4 135 60.0
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 6.9e-41 171.4 135 60.0
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 4.5e-40 168.7 128 61.7
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 5.8e-40 168.3 170 52.4
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 9.9e-40 167.5 159 53.5
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 1.7e-39 166.8 106 73.6
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 2.9e-39 166.0 137 57.7
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 3.8e-39 165.6 128 61.7
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 4.9e-39 165.2 144 55.6
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.4e-38 163.7 137 56.2
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 1.4e-38 163.7 96 74.0
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 1.9e-38 163.3 111 67.6
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 3.2e-38 162.5 96 78.1
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 5.4e-38 161.8 111 65.8
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 4.6e-37 158.7 137 59.9
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 6.0e-37 158.3 108 69.4
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 6.2e-34 148.3 93 76.3
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 1.5e-32 143.7 119 54.6
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 5.8e-32 141.7 120 53.3
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 1.7e-31 140.2 120 51.7
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 4.9e-31 138.7 95 66.3
RcHm_v2.0_Chr5g0063511 Rosa chinensis HOM05D005861 ORTHO05D007151 1.9e-30 136.7 95 67.4
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 5.5e-30 135.2 131 45.8
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 2.4e-25 119.8 86 65.1
Lj1g0019510 Lotus japonicus HOM05D005861 ORTHO05D007151 1.5e-24 117.1 67 79.1
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 8.4e-23 111.3 120 48.3
A03p17610 Brassica napus HOM05D005861 ORTHO05D007151 4.6e-21 105.5 90 57.8
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 1.8e-20 103.6 90 53.3
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 1.9e-19 100.1 104 47.1
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 2.2e-15 86.7 177 33.3
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 7.2e-14 81.6 86 54.7
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 7.2e-14 81.6 86 54.7
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.6e-13 80.5 63 58.7
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 2.1e-13 80.1 65 55.4
Lj3g0008154 Lotus japonicus HOM05D005861 ORTHO05D007151 6.1e-13 78.6 63 55.6
Lj4g0007893 Lotus japonicus HOM05D005861 ORTHO05D007151 1.0e-12 77.8 63 55.6
A03p17620 Brassica napus HOM05D005861 ORTHO05D007151 6.7e-12 75.1 40 85.0
MD05G1244700 Malus domestica HOM05D005861 ORTHO05D007151 6.3e-10 68.6 34 85.3


User provided reference genes

Program Settings