Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_009026 Vanilla planifolia HOM05D000055 ORTHO05D429704 4.5e-36 154.1 77 100.0
HPP92_009063 Vanilla planifolia HOM05D000055 ORTHO05D002202 2.5e-10 68.6 83 55.4
THA.LOC104821014 Tarenaya hassleriana HOM05D000055 ORTHO05D002202 3.0e-08 61.6 61 60.7
BcaC09g47678 Brassica carinata HOM05D000055 ORTHO05D002202 3.9e-08 61.2 56 64.3
BNapus_Darmor_BZH_scaffold_113p00080 Brassica napus HOM05D000055 ORTHO05D002202 3.9e-08 61.2 56 64.3
BNapus_Darmor_BZH_scaffold_97p00080 Brassica napus HOM05D000055 ORTHO05D002202 3.9e-08 61.2 56 64.3
BolC1t05926H Brassica oleracea HOM05D000055 ORTHO05D002202 3.9e-08 61.2 56 64.3
BraA01t04637Z Brassica rapa HOM05D000055 ORTHO05D002202 3.9e-08 61.2 56 64.3
Atru.chr8.332 Acer truncatum HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Aa31LG5G12530 Aethionema arabicum HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Aqoxy3G03498 Aquilegia oxysepala HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
AL3G11160 Arabidopsis lyrata HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
AT3G01090 Arabidopsis thaliana HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
CANSAT64G2077 Cannabis sativa HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Carub.0003s0107 Capsella rubella HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
CARHR075950 Cardamine hirsuta HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Cpa.g.sc14.127 Carica papaya HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Ciclev10011600m.g Citrus clementina HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
DCAR_011074 Daucus carota HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
DCAR_025388 Daucus carota HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Thhalv10020553m.g Eutrema salsugineum HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
FvH4_6g47850 Fragaria vesca HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
FAN02G0584 Fragaria x ananassa HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
FAN05G4817 Fragaria x ananassa HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
FAN09G0744 Fragaria x ananassa HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
FAN14G0776 Fragaria x ananassa HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Hma1.2p1_0409F.1_g146680 Hydrangea macrophylla HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
MBI10_g39120_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
MD17G1053700 Malus domestica HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Manes.01G100900 Manihot esculenta HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Manes.02G049300 Manihot esculenta HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Nn7g38239 Nelumbo nucifera HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Potri.004G115900 Populus trichocarpa HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Prupe.3G262900 Prunus persica HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
RcHm_v2.0_Chr2g0167051 Rosa chinensis HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
SalBow1G7682 Salvia bowleyana HOM05D000055 ORTHO05D002202 6.7e-08 60.5 61 55.7
Sp3g01020 Schrenkiella parvula HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Thecc.04G087900 Theobroma cacao HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
TWI32G0614 Tripterygium wilfordii HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
TWI34G0578 Tripterygium wilfordii HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
TWI34G1094 Tripterygium wilfordii HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
TAR622G1104 Trochodendron aralioides HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
HPP92_009078 Vanilla planifolia HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
GSVIVG01011467001 Vitis vinifera HOM05D000055 ORTHO05D002202 6.7e-08 60.5 33 90.9
Potri.017G087900 Populus trichocarpa HOM05D000055 ORTHO05D002202 8.8e-08 60.1 33 87.9
BcaC05g30380 Brassica carinata HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
A05p44860 Brassica napus HOM05D000321 ORTHO05D002202 1.5e-07 59.3 33 87.9
C09p75440 Brassica napus HOM05D000321 ORTHO05D002202 1.5e-07 59.3 33 87.9
BolC5t35115H Brassica oleracea HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
BraA05t23171Z Brassica rapa HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
ClCG06G000450 Citrullus lanatus HOM05D000055 ORTHO05D002202 1.5e-07 59.3 55 61.8
HanXRQChr15g0473131 Helianthus annuus HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
Lj4A114T78 Lonicera japonica HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
Lju41C9T1 Lonicera japonica HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
MD09G1056200 Malus domestica HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
PSO017G0045 Papaver somniferum HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
PSO478G5094 Papaver somniferum HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
Rhsim08G0072500 Rhododendron simsii HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
THA.LOC104822350 Tarenaya hassleriana HOM05D000055 ORTHO05D002202 1.5e-07 59.3 33 87.9
arahy.Tifrunner.gnm1.ann1.99YWNZ Arachis hypogaea HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
arahy.Tifrunner.gnm1.ann1.DRZ38W Arachis hypogaea HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
arahy.Tifrunner.gnm1.ann1.TD6B9U Arachis hypogaea HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Cc07_g03680 Coffea canephora HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 84.8
ECA238G4778 Erigeron canadensis HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Eucgr.J01364 Eucalyptus grandis HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Glyma.08G240300 Glycine max HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Glyma.18G262900 Glycine max HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Lsat_1_v5_gn_2_89321 Lactuca sativa HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Lj1g0025883 Lotus japonicus HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Lalb_Chr02g0159141 Lupinus albus HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Lalb_Chr06g0175161 Lupinus albus HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Lalb_Chr21g0318551 Lupinus albus HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Medtr6g012990 Medicago truncatula HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Phvul.008G039400 Phaseolus vulgaris HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Psat1g069760 Pisum sativum HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Sabra17G0077700 Salix brachista HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 84.8
TPR.G26191 Trifolium pratense HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
VMungo1383G3727 Vigna mungo HOM05D000055 ORTHO05D002202 2.0e-07 58.9 33 87.9
Ah.06g188930 Amaranthus hybridus HOM05D000055 ORTHO05D002202 2.6e-07 58.5 33 87.9
Cfa007598 Carpinus fangiana HOM05D000055 ORTHO05D002202 2.6e-07 58.5 34 82.4
Gohir.A07G206800 Gossypium hirsutum HOM05D000055 ORTHO05D002202 2.6e-07 58.5 33 87.9
Gohir.D07G213000 Gossypium hirsutum HOM05D000055 ORTHO05D002202 2.6e-07 58.5 33 87.9
Gorai.001G241000 Gossypium raimondii HOM05D000055 ORTHO05D002202 2.6e-07 58.5 33 87.9
Nitab4.5_0000568g0250 Nicotiana tabacum HOM05D000055 ORTHO05D002202 2.6e-07 58.5 33 84.8
Os05g0530500 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D002202 2.6e-07 58.5 33 87.9
PGR083G1214 Punica granatum HOM05D000055 ORTHO05D002202 2.6e-07 58.5 33 84.8
Hund15199 Selenicereus undatus HOM05D000055 ORTHO05D002202 2.6e-07 58.5 33 87.9
Hund15202 Selenicereus undatus HOM05D000055 ORTHO05D002202 2.6e-07 58.5 33 87.9
Sc16g0009720 Simmondsia chinensis HOM05D000055 ORTHO05D002202 2.6e-07 58.5 33 87.9
CiPaw.04G014400 Carya illinoinensis HOM05D000055 ORTHO05D002202 3.3e-07 58.2 33 84.8
CsaV3_6G006250 Cucumis sativus L. HOM05D000055 ORTHO05D002202 3.3e-07 58.2 33 84.8
Duzib187G1255 Durio zibethinus HOM05D000055 ORTHO05D002202 3.3e-07 58.2 33 84.8
PSO063G1984 Papaver somniferum HOM05D000055 ORTHO05D002202 3.3e-07 58.2 33 84.8
PSO409G0026 Papaver somniferum HOM05D000055 ORTHO05D002202 3.3e-07 58.2 33 84.8
QL02p084951 Quercus lobata HOM05D000055 ORTHO05D002202 3.3e-07 58.2 33 84.8
Sed0016783 Sechium edule HOM05D000055 ORTHO05D002202 3.3e-07 58.2 55 60.0
SEGI_05584 Sequoiadendron giganteum HOM05D000055 ORTHO05D002202 3.3e-07 58.2 33 84.8
Aa31LG2G4080 Aethionema arabicum HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
AL5G19070 Arabidopsis lyrata HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
AT3G29160 Arabidopsis thaliana HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
BcaC03g17564 Brassica carinata HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
A02p36410 Brassica napus HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
C02p55340 Brassica napus HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
BolC2t11591H Brassica oleracea HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
BraA02t08638Z Brassica rapa HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
Carub.0005s0788 Capsella rubella HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
CARHR152320 Cardamine hirsuta HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
ECA246G0178 Erigeron canadensis HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
Thhalv10004026m.g Eutrema salsugineum HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
HanXRQChr17g0545951 Helianthus annuus HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 81.8
Medtr6g048250 Medicago truncatula HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
Oeu020663.1 Olea europaea HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 81.8
Sp2g17770 Schrenkiella parvula HOM05D000055 ORTHO05D002202 4.4e-07 57.8 33 84.8
SGA_v2.0_scaffold413G51172 Striga asiatica HOM05D000084 ORTHO05D002202 4.4e-07 57.8 33 81.8
vmacro18168 Vaccinium macrocarpon HOM05D000055 ORTHO05D002202 4.4e-07 57.8 32 87.5
AagrBONN_evm.TU.Sc2ySwM_228.4766 Anthoceros agrestis HOM05D000055 ORTHO05D002202 5.7e-07 57.4 33 84.8
arahy.Tifrunner.gnm1.ann1.SN40SK Arachis hypogaea HOM05D000055 ORTHO05D002202 5.7e-07 57.4 32 87.5
MSTRG.15467 Avicennia marina HOM05D000055 ORTHO05D002202 5.7e-07 57.4 57 57.9
MSTRG.3338 Avicennia marina HOM05D000055 ORTHO05D002202 5.7e-07 57.4 33 81.8
Cre04.g211600 Chlamydomonas reinhardtii HOM05D000055 ORTHO05D002202 5.7e-07 57.4 33 81.8
Dinv33789 Davidia involucrata HOM05D000055 ORTHO05D002202 5.7e-07 57.4 33 87.9
Migut.H00673 Erythranthe guttata HOM05D000055 ORTHO05D002202 5.7e-07 57.4 57 56.1
Mapoly0160s0010 Marchantia polymorpha HOM05D000055 ORTHO05D002202 5.7e-07 57.4 33 81.8
Nitab4.5_0020296g0010 Nicotiana tabacum HOM05D000055 ORTHO05D002202 5.7e-07 57.4 33 81.8
SGA_v2.0_scaffold4G02430 Striga asiatica HOM05D000055 ORTHO05D002202 5.7e-07 57.4 33 78.8
Zm00001eb353700 Zea mays HOM05D000055 ORTHO05D002202 5.7e-07 57.4 33 84.8
Aqoxy5G03873 Aquilegia oxysepala HOM05D000055 ORTHO05D002202 7.4e-07 57.0 33 84.8
CiPaw.03G021700 Carya illinoinensis HOM05D000055 ORTHO05D002202 7.4e-07 57.0 33 81.8
Sabra04G0067800 Salix brachista HOM05D000055 ORTHO05D002202 7.4e-07 57.0 33 81.8
Sed0018345 Sechium edule HOM05D000055 ORTHO05D002202 7.4e-07 57.0 33 81.8
ATR0307G119 Amborella trichopoda HOM05D000055 ORTHO05D002202 9.7e-07 56.6 33 81.8
BcaB07g30094 Brassica carinata HOM05D000055 ORTHO05D002202 9.7e-07 56.6 33 81.8
Ca_06800_v3 Cicer arietinum L. HOM05D000055 ORTHO05D002202 9.7e-07 56.6 33 81.8
Haze_14494 Corylus avellana HOM05D000055 ORTHO05D002202 9.7e-07 56.6 32 84.4
Oeu000845.1 Olea europaea HOM05D000055 ORTHO05D002202 9.7e-07 56.6 33 78.8
Ah.04g157710 Amaranthus hybridus HOM05D000055 ORTHO05D002202 1.3e-06 56.2 55 60.0
BcaC06g33674 Brassica carinata HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 81.8
A06p40100 Brassica napus HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 81.8
C07p38050 Brassica napus HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 81.8
BolC7t44327H Brassica oleracea HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 81.8
BraA06t26925Z Brassica rapa HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 81.8
CSS0007360 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 84.8
CAN.G398.1 Capsicum annuum HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 78.8
CDE04G0841 Ceratophyllum demersum HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 81.8
AUR62032355 Chenopodium quinoa HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 84.8
AUR62041850 Chenopodium quinoa HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 84.8
Migut.K01302 Erythranthe guttata HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 78.8
Lsat_1_v5_gn_3_99781 Lactuca sativa HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 84.8
Nn4g23285 Nelumbo nucifera HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 81.8
Peaxi162Scf00629g00026 Petunia axillaris HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 78.8
SalBow1G8426 Salvia bowleyana HOM05D000055 ORTHO05D002202 1.3e-06 56.2 32 81.2
Solyc02g067030.4 Solanum lycopersicum HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 78.8
Sopen02g016220 Solanum pennellii HOM05D000055 ORTHO05D002202 1.3e-06 56.2 33 78.8
Ca_04858_v3 Cicer arietinum L. HOM05D000055 ORTHO05D002202 1.7e-06 55.8 33 84.8
Glyma.08G240400 Glycine max HOM05D000055 ORTHO05D002202 1.7e-06 55.8 33 84.8
Phvul.004G032000 Phaseolus vulgaris HOM05D000055 ORTHO05D002202 1.7e-06 55.8 33 81.8
SMO358G0686 Selaginella moellendorffii HOM05D000055 ORTHO05D002202 1.7e-06 55.8 51 58.8
SMO358G0731 Selaginella moellendorffii HOM05D000055 ORTHO05D031117 1.7e-06 55.8 51 58.8
THA.LOC104805487 Tarenaya hassleriana HOM05D000055 ORTHO05D002202 1.7e-06 55.8 33 75.8
HPP92_012448 Vanilla planifolia HOM05D000055 ORTHO05D002202 1.7e-06 55.8 33 78.8
C03p39800 Brassica napus HOM05D000321 ORTHO05D002202 2.2e-06 55.5 64 54.7
BolC3t16244H Brassica oleracea HOM05D001730 ORTHO05D002202 2.2e-06 55.5 64 54.7
PSO063G5031 Papaver somniferum HOM05D000055 ORTHO05D031117 2.2e-06 55.5 33 81.8
Os03g0289100 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D002202 2.8e-06 55.1 32 81.2
Os08g0484600 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D002202 2.8e-06 55.1 32 81.2
Zm00001eb293240 Zea mays HOM05D000055 ORTHO05D002202 2.8e-06 55.1 33 78.8
Glyma.13G060400 Glycine max HOM05D000055 ORTHO05D002202 3.7e-06 54.7 33 81.8
Gohir.A09G012900 Gossypium hirsutum HOM05D000055 ORTHO05D002202 3.7e-06 54.7 33 81.8
Gohir.D09G011566 Gossypium hirsutum HOM05D000055 ORTHO05D002202 3.7e-06 54.7 33 81.8
Gorai.006G013500 Gossypium raimondii HOM05D000055 ORTHO05D002202 3.7e-06 54.7 33 81.8
Lsat_1_v5_gn_5_21601 Lactuca sativa HOM05D000055 ORTHO05D002202 3.7e-06 54.7 56 53.6
SMO196G0052 Selaginella moellendorffii HOM05D000055 ORTHO05D002202 3.7e-06 54.7 33 78.8
VMungo1383G1877 Vigna mungo HOM05D000055 ORTHO05D002202 3.7e-06 54.7 34 79.4
BcaC01g04500 Brassica carinata HOM05D000055 ORTHO05D002202 4.8e-06 54.3 33 78.8
Pp3c1_37450 Physcomitrium patens HOM05D000055 ORTHO05D002202 4.8e-06 54.3 33 75.8
Pp3c2_5790 Physcomitrium patens HOM05D000055 ORTHO05D002202 4.8e-06 54.3 33 75.8
Zm00001eb094400 Zea mays HOM05D000055 ORTHO05D002202 4.8e-06 54.3 33 81.8
CDE07G0442 Ceratophyllum demersum HOM05D000055 ORTHO05D002202 6.3e-06 53.9 33 78.8
Hma1.2p1_0060F.1_g033470 Hydrangea macrophylla HOM05D000055 ORTHO05D002202 6.3e-06 53.9 33 78.8
Hma1.2p1_2933F.1_g330540 Hydrangea macrophylla HOM05D000055 ORTHO05D002202 6.3e-06 53.9 33 78.8
Nitab4.5_0000212g0130 Nicotiana tabacum HOM05D000055 ORTHO05D002202 6.3e-06 53.9 33 75.8
Nitab4.5_0003347g0100 Nicotiana tabacum HOM05D000055 ORTHO05D002202 6.3e-06 53.9 33 75.8
CSS0018482 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D002202 8.2e-06 53.5 71 52.1
Peaxi162Scf00274g00343 Petunia axillaris HOM05D000055 ORTHO05D002202 8.2e-06 53.5 33 75.8


User provided reference genes

Program Settings