Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008700 Vanilla planifolia HOM05D003921 ORTHO05D004394 5.0e-110 401.4 241 100.0
Lj3g0006890 Lotus japonicus HOM05D003921 ORTHO05D004394 1.4e-43 180.6 137 61.3
Thecc.03G161300 Theobroma cacao HOM05D003921 ORTHO05D004394 5.3e-43 178.7 147 59.9
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 9.0e-43 177.9 141 61.0
ATR0626G386 Amborella trichopoda HOM05D003921 ORTHO05D004394 4.5e-42 175.6 190 55.8
Glyma.10G154500 Glycine max HOM05D003921 ORTHO05D004394 1.0e-41 174.5 136 60.3
TAR636G2246 Trochodendron aralioides HOM05D003921 ORTHO05D004394 1.0e-41 174.5 149 57.7
Cpa.g.sc3.273 Carica papaya HOM05D003921 ORTHO05D004394 1.3e-41 174.1 140 61.4
Potri.015G131200 Populus trichocarpa HOM05D003921 ORTHO05D004394 1.3e-41 174.1 134 60.4
Gohir.A07G039500 Gossypium hirsutum HOM05D003921 ORTHO05D004394 2.2e-41 173.3 134 61.2
Duzib084G0641 Durio zibethinus HOM05D003921 ORTHO05D004394 2.9e-41 172.9 140 58.6
Glyma.20G233800 Glycine max HOM05D003921 ORTHO05D004394 8.5e-41 171.4 135 59.3
Manes.06G137800 Manihot esculenta HOM05D003921 ORTHO05D004394 1.9e-40 170.2 147 57.1
Aqoxy1G01610 Aquilegia oxysepala HOM05D003921 ORTHO05D004394 2.5e-40 169.9 134 59.0
PGR042G0045 Punica granatum HOM05D003921 ORTHO05D004394 2.5e-40 169.9 132 62.9
THA.LOC104808294 Tarenaya hassleriana HOM05D003921 ORTHO05D004394 2.5e-40 169.9 131 62.6
BraA05t21488Z Brassica rapa HOM05D003921 ORTHO05D004394 3.2e-40 169.5 143 59.4
Gohir.D07G043600 Gossypium hirsutum HOM05D003921 ORTHO05D004394 4.2e-40 169.1 134 59.7
Gorai.001G046600 Gossypium raimondii HOM05D003921 ORTHO05D004394 4.2e-40 169.1 134 59.7
BraA01t03380Z Brassica rapa HOM05D003921 ORTHO05D004394 5.5e-40 168.7 140 60.7
A01p32500 Brassica napus HOM05D003921 ORTHO05D004394 1.2e-39 167.5 142 59.2
Lalb_Chr10g0096111 Lupinus albus HOM05D003921 ORTHO05D004394 1.2e-39 167.5 141 58.2
Phvul.007G180200 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.6e-39 167.2 123 65.9
BcaB06g26378 Brassica carinata HOM05D003921 ORTHO05D004394 2.1e-39 166.8 143 59.4
BcaC09g49188 Brassica carinata HOM05D003921 ORTHO05D004394 2.1e-39 166.8 141 60.3
C01p41660 Brassica napus HOM05D003921 ORTHO05D004394 2.1e-39 166.8 141 60.3
BolC1t04121H Brassica oleracea HOM05D003921 ORTHO05D004394 2.1e-39 166.8 141 60.3
Aa31LG5G22190 Aethionema arabicum HOM05D003921 ORTHO05D004394 2.7e-39 166.4 142 57.7
CDE07G0272 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.7e-39 166.4 124 61.3
Cfa018157 Carpinus fangiana HOM05D003921 ORTHO05D004394 3.6e-39 166.0 148 58.1
A05p26040 Brassica napus HOM05D003921 ORTHO05D004394 6.1e-39 165.2 143 58.7
Haze_17961 Corylus avellana HOM05D003921 ORTHO05D004394 7.9e-39 164.9 148 57.4
Nn1g08099 Nelumbo nucifera HOM05D003921 ORTHO05D004394 7.9e-39 164.9 134 59.7
Hma1.2p1_0654F.1_g196410 Hydrangea macrophylla HOM05D003921 ORTHO05D004394 1.0e-38 164.5 139 57.6
Sp3g20420 Schrenkiella parvula HOM05D003921 ORTHO05D004394 1.0e-38 164.5 141 58.9
Aa31LG5G22200 Aethionema arabicum HOM05D003921 ORTHO05D004394 1.3e-38 164.1 106 67.9
Rhsim11G0028600 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.3e-38 164.1 127 59.8
BcaB04g20506 Brassica carinata HOM05D003921 ORTHO05D004394 1.8e-38 163.7 107 71.0
Phvul.007G264700 Phaseolus vulgaris HOM05D003921 ORTHO05D004394 1.8e-38 163.7 122 64.8
Lj1P984T37 Lonicera japonica HOM05D003921 ORTHO05D004394 2.3e-38 163.3 110 67.3
vmacro18851 Vaccinium macrocarpon HOM05D003921 ORTHO05D004394 3.0e-38 162.9 140 55.0
BcaC01g03432 Brassica carinata HOM05D003921 ORTHO05D004394 5.1e-38 162.2 107 70.1
C03p52650 Brassica napus HOM05D003921 ORTHO05D004394 5.1e-38 162.2 107 70.1
BolC3t17533H Brassica oleracea HOM05D003921 ORTHO05D004394 5.1e-38 162.2 107 70.1
CANSAT11G2317 Cannabis sativa HOM05D003921 ORTHO05D004394 5.1e-38 162.2 147 57.1
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.1e-38 162.2 109 67.0
MBI05_g15474_MAGBIO Magnolia biondii HOM05D003921 ORTHO05D004394 5.1e-38 162.2 146 57.5
Sed0026547 Sechium edule HOM05D003921 ORTHO05D004394 5.1e-38 162.2 109 66.1
arahy.Tifrunner.gnm1.ann1.HSUB65 Arachis hypogaea HOM05D003921 ORTHO05D004394 6.7e-38 161.8 127 59.1
Sed0011284 Sechium edule HOM05D003921 ORTHO05D004394 6.7e-38 161.8 138 56.5
BcaB04g19210 Brassica carinata HOM05D003921 ORTHO05D004394 8.7e-38 161.4 106 68.9
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.7e-38 161.4 109 67.0
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.7e-38 161.4 109 67.0
FAN10G0556 Fragaria x ananassa HOM05D003921 ORTHO05D004394 8.7e-38 161.4 109 67.0
TAR626G1747 Trochodendron aralioides HOM05D003921 ORTHO05D004394 8.7e-38 161.4 130 62.3
Atru.chr1.637 Acer truncatum HOM05D003921 ORTHO05D004394 1.5e-37 160.6 135 57.8
Thhalv10021245m.g Eutrema salsugineum HOM05D003921 ORTHO05D004394 1.5e-37 160.6 106 67.9
Os07g0475800 Oryza sativa ssp. japonica HOM05D003921 ORTHO05D004394 1.5e-37 160.6 105 69.5
FvH4_7g28160 Fragaria vesca HOM05D003921 ORTHO05D004394 2.5e-37 159.8 139 56.8
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.5e-37 159.8 139 56.8
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 2.5e-37 159.8 139 56.8
HanXRQChr05g0141401 Helianthus annuus HOM05D003921 ORTHO05D004394 2.5e-37 159.8 108 64.8
Lalb_Chr17g0338581 Lupinus albus HOM05D003921 ORTHO05D004394 2.5e-37 159.8 137 56.9
A03p42870 Brassica napus HOM05D003921 ORTHO05D004394 3.3e-37 159.5 141 59.6
Lsat_1_v5_gn_6_96180 Lactuca sativa HOM05D003921 ORTHO05D004394 3.3e-37 159.5 110 65.5
Zm00001eb235000 Zea mays HOM05D003921 ORTHO05D004394 4.3e-37 159.1 131 58.0
BraA03t13433Z Brassica rapa HOM05D003921 ORTHO05D004394 5.7e-37 158.7 143 60.1
Ciclev10005521m.g Citrus clementina HOM05D003921 ORTHO05D004394 5.7e-37 158.7 108 65.7
CsaV3_5G005400 Cucumis sativus L. HOM05D003921 ORTHO05D004394 5.7e-37 158.7 108 64.8
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.7e-37 158.7 139 56.1
ECA234G0656 Erigeron canadensis HOM05D003921 ORTHO05D004394 9.7e-37 157.9 106 67.0
Rhsim07G0193400 Rhododendron simsii HOM05D003921 ORTHO05D004394 1.3e-36 157.5 108 63.9
Ca_20760_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.6e-36 157.1 132 56.8
Ca_31306_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 1.6e-36 157.1 132 56.8
ClCG01G005120 Citrullus lanatus HOM05D003921 ORTHO05D004394 1.6e-36 157.1 108 63.9
Solyc01g006090.3 Solanum lycopersicum HOM05D003921 ORTHO05D004394 1.6e-36 157.1 140 57.9
HanXRQChr08g0224051 Helianthus annuus HOM05D003921 ORTHO05D004394 2.2e-36 156.8 108 64.8
Medtr8g075400 Medicago truncatula HOM05D003921 ORTHO05D004394 2.2e-36 156.8 134 56.7
Sc03g0002240 Simmondsia chinensis HOM05D003921 ORTHO05D004394 2.2e-36 156.8 132 58.3
AL3G36960 Arabidopsis lyrata HOM05D003921 ORTHO05D004394 4.8e-36 155.6 142 56.3
Zm00001eb104900 Zea mays HOM05D003921 ORTHO05D004394 4.8e-36 155.6 103 68.0
MD01G1185600 Malus domestica HOM05D003921 ORTHO05D004394 6.3e-36 155.2 121 60.3
Medtr5g028350 Medicago truncatula HOM05D003921 ORTHO05D004394 6.3e-36 155.2 126 57.1
RcHm_v2.0_Chr1g0375101 Rosa chinensis HOM05D003921 ORTHO05D004394 6.3e-36 155.2 139 54.0
unitig_744.g24672 Utricularia gibba HOM05D003921 ORTHO05D004394 6.3e-36 155.2 134 58.2
MD07G1257700 Malus domestica HOM05D003921 ORTHO05D004394 8.2e-36 154.8 121 59.5
TPR.G19495 Trifolium pratense HOM05D002828 ORTHO05D003457 8.2e-36 154.8 132 56.1
AT3G22660 Arabidopsis thaliana HOM05D003921 ORTHO05D004394 1.1e-35 154.5 106 66.0
Cc02_g03920 Coffea canephora HOM05D003921 ORTHO05D004394 1.1e-35 154.5 119 64.7
BcaC09g49189 Brassica carinata HOM05D003921 ORTHO05D004394 1.4e-35 154.1 130 60.0
Migut.J00413 Erythranthe guttata HOM05D003921 ORTHO05D004394 1.4e-35 154.1 137 58.4
MELO3C005417.2 Cucumis melo HOM05D003921 ORTHO05D004394 1.8e-35 153.7 147 51.7
CSS0011813 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 2.4e-35 153.3 106 65.1
Pp3c6_25210 Physcomitrium patens HOM05D003921 ORTHO05D004394 2.4e-35 153.3 134 56.7
Solyc01g006170.4 Solanum lycopersicum HOM05D003921 ORTHO05D004394 3.1e-35 152.9 141 55.3
Carub.0003s2281 Capsella rubella HOM05D003921 ORTHO05D004394 4.1e-35 152.5 142 55.6
AUR62006749 Chenopodium quinoa HOM05D003921 ORTHO05D004394 4.1e-35 152.5 147 53.1
PSO478G1412 Papaver somniferum HOM05D003921 ORTHO05D004394 4.1e-35 152.5 124 61.3
BcaC05g28029 Brassica carinata HOM05D003921 ORTHO05D004394 5.3e-35 152.1 134 56.7
BolC5t32786H Brassica oleracea HOM05D003921 ORTHO05D004394 5.3e-35 152.1 134 56.7
Nitab4.5_0005477g0070 Nicotiana tabacum HOM05D003921 ORTHO05D004394 5.3e-35 152.1 132 58.3
CSS0023430 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 9.0e-35 151.4 137 51.1
CSS0049059 Camellia sinensis var. sinensis HOM05D003921 ORTHO05D004394 9.0e-35 151.4 139 52.5
DCAR_020219 Daucus carota HOM05D003921 ORTHO05D004394 9.0e-35 151.4 109 63.3
Dinv22928 Davidia involucrata HOM05D003921 ORTHO05D004394 1.2e-34 151.0 135 54.8
PSO782G4293 Papaver somniferum HOM05D003921 ORTHO05D004394 1.5e-34 150.6 131 59.5
CDE04G0151 Ceratophyllum demersum HOM05D003921 ORTHO05D004394 2.0e-34 150.2 119 60.5
CiPaw.15G078700 Carya illinoinensis HOM05D003921 ORTHO05D004394 2.6e-34 149.8 138 55.1
Ciclev10006627m.g Citrus clementina HOM05D003921 ORTHO05D004394 2.6e-34 149.8 121 59.5
Sopen01g002180 Solanum pennellii HOM05D003921 ORTHO05D004394 2.6e-34 149.8 134 55.2
PGSC0003DMG400032192 Solanum tuberosum HOM05D003921 ORTHO05D004394 2.6e-34 149.8 134 55.2
QL02p008779 Quercus lobata HOM05D003921 ORTHO05D004394 3.4e-34 149.4 134 54.5
TPR.G27266 Trifolium pratense HOM05D003921 ORTHO05D004394 3.4e-34 149.4 123 57.7
Ca_25165_v3 Cicer arietinum L. HOM05D003921 ORTHO05D004394 4.5e-34 149.1 124 57.3
VMungo0720G1998 Vigna mungo HOM05D003921 ORTHO05D004394 4.5e-34 149.1 122 59.8
Prupe.2G282000 Prunus persica HOM05D003921 ORTHO05D004394 5.9e-34 148.7 122 56.6
PGSC0003DMG400032141 Solanum tuberosum HOM05D003921 ORTHO05D004394 5.9e-34 148.7 131 55.0
TWI23G0331 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.3e-33 147.5 139 51.8
TWI14G0513 Tripterygium wilfordii HOM05D003921 ORTHO05D004394 1.7e-33 147.1 138 52.2
MSTRG.14093 Avicennia marina HOM05D003921 ORTHO05D004394 3.8e-33 146.0 116 61.2
Psat2g139240 Pisum sativum HOM05D003921 ORTHO05D004394 3.8e-33 146.0 123 58.5
SHI13875 Sapria himalayana HOM05D003921 ORTHO05D004394 3.8e-33 146.0 128 57.0
Ah.06g188100 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.5e-33 145.2 146 48.6
DCAR_018123 Daucus carota HOM05D003921 ORTHO05D004394 8.5e-33 144.8 139 54.7
Nitab4.5_0001620g0040 Nicotiana tabacum HOM05D003921 ORTHO05D004394 8.5e-33 144.8 106 62.3
AUR62000393 Chenopodium quinoa HOM05D003921 ORTHO05D004394 1.1e-32 144.4 142 51.4
Lalb_Chr06g0167921 Lupinus albus HOM05D003921 ORTHO05D004394 1.1e-32 144.4 138 56.5
Ah.06g188120 Amaranthus hybridus HOM05D003921 ORTHO05D004394 2.5e-32 143.3 138 51.4
SGA_v2.0_scaffold126G33894 Striga asiatica HOM05D003921 ORTHO05D004394 2.5e-32 143.3 131 55.0
Eucgr.E01709 Eucalyptus grandis HOM05D003921 ORTHO05D004394 3.2e-32 142.9 111 61.3
CARHR098540 Cardamine hirsuta HOM05D003921 ORTHO05D004394 7.2e-32 141.7 128 54.7
EL10Ac4g09457 Beta vulgaris HOM05D003921 ORTHO05D004394 1.2e-31 141.0 147 48.3
Peaxi162Scf00441g00013 Petunia axillaris HOM05D003921 ORTHO05D004394 1.2e-31 141.0 130 56.9
Ah.06g188150 Amaranthus hybridus HOM05D003921 ORTHO05D004394 3.6e-31 139.4 144 49.3
Eucgr.K01460 Eucalyptus grandis HOM05D003921 ORTHO05D004394 4.6e-31 139.0 143 50.3
Ah.06g188070 Amaranthus hybridus HOM05D003921 ORTHO05D004394 6.1e-31 138.7 138 50.7
RcHm_v2.0_Chr5g0027461 Rosa chinensis HOM05D003921 ORTHO05D017011 3.3e-29 132.9 134 51.5
Nn1g01220 Nelumbo nucifera HOM05D003921 ORTHO05D004394 5.7e-29 132.1 126 51.6
SMO174G0035 Selaginella moellendorffii HOM05D003921 ORTHO05D004394 5.7e-29 132.1 108 59.3
Mapoly0140s0011 Marchantia polymorpha HOM05D003921 ORTHO05D004394 9.7e-29 131.3 108 58.3
CAN.G140.50 Capsicum annuum HOM05D003921 ORTHO05D004394 4.8e-28 129.0 118 54.2
ECA233G5254 Erigeron canadensis HOM05D003921 ORTHO05D004394 3.1e-27 126.3 148 56.8
CBR_g18581 Chara braunii HOM05D001161 ORTHO05D000497 7.2e-24 115.2 109 53.2
AagrBONN_evm.TU.Sc2ySwM_228.1082 Anthoceros agrestis HOM05D003921 ORTHO05D004394 9.4e-24 114.8 144 45.1
Nitab4.5_0000249g0460 Nicotiana tabacum HOM05D003921 ORTHO05D004394 1.0e-22 111.3 132 48.5
Dinv22984 Davidia involucrata HOM05D003921 ORTHO05D004394 1.1e-21 107.8 146 40.4
Rhsim11G0028700 Rhododendron simsii HOM05D003921 ORTHO05D004394 9.7e-21 104.8 127 44.9
Nitab4.5_0004389g0020 Nicotiana tabacum HOM05D003921 ORTHO05D004394 2.2e-20 103.6 132 45.5
Cre07.g351750 Chlamydomonas reinhardtii HOM05D003921 ORTHO05D004394 3.7e-20 102.8 108 46.3
PRCOL_00003036 Prasinoderma coloniale HOM05D003921 ORTHO05D004394 5.9e-18 95.5 120 44.2
Nn4g26407 Nelumbo nucifera HOM05D003921 ORTHO05D004394 7.7e-18 95.1 134 42.5
Actinidia25037 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.5e-16 90.1 75 58.7
Nn4g26401 Nelumbo nucifera HOM05D003921 ORTHO05D004394 6.7e-14 82.0 74 54.1
MCO16G303 Micromonas commoda HOM05D003921 ORTHO05D004394 1.2e-13 81.3 88 43.2
Actinidia39598 Actinidia chinensis HOM05D003921 ORTHO05D004394 2.0e-13 80.5 109 43.1
Actinidia13554 Actinidia chinensis HOM05D003921 ORTHO05D004394 1.7e-12 77.4 65 56.9
Sopen01g002090 Solanum pennellii HOM05D003921 ORTHO05D004394 4.8e-12 75.9 56 62.5
Oeu019922.1 Olea europaea HOM05D003921 ORTHO05D004394 1.1e-11 74.7 77 49.4
Oeu023230.1 Olea europaea HOM05D003921 ORTHO05D004394 4.5e-10 69.3 77 49.4
Oeu021724.1 Olea europaea HOM05D003921 ORTHO05D004394 1.0e-09 68.2 131 35.1
GSVIVG01018514001 Vitis vinifera HOM05D003921 ORTHO05D004394 3.8e-09 66.2 75 46.7
Dinv10307 Davidia involucrata HOM05D003921 ORTHO05D004394 1.5e-08 64.3 47 59.6
FvH4_1g22470 Fragaria vesca HOM05D003475 ORTHO05D035452 2.5e-08 63.5 65 50.8
ATR0564G120 Amborella trichopoda HOM05D003921 ORTHO05D004394 4.2e-08 62.8 37 73.0
Gorai.008G283700 Gossypium raimondii HOM05D003921 ORTHO05D004394 5.2e-06 55.8 74 47.3


User provided reference genes

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