Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_008318 Vanilla planifolia HOM05D003502 ORTHO05D004250 0.0e+00 2107.8 1138 100.0
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 7.2e-292 1007.7 1146 54.1
Zm00001eb141360 Zea mays HOM05D003502 ORTHO05D004250 4.0e-290 1001.9 998 59.6
Os12g0433500 Oryza sativa ssp. japonica HOM05D003502 ORTHO05D004250 2.2e-288 996.1 1114 54.8
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 6.6e-269 931.4 1122 51.6
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 2.9e-264 916.0 1117 51.5
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 7.1e-263 911.4 1034 53.6
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 1.2e-262 910.6 1112 51.3
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 2.1e-262 909.8 1116 51.4
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 4.7e-259 898.7 1114 49.6
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 3.1e-258 896.0 1116 51.6
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 7.6e-257 891.3 1112 50.8
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 1.3e-256 890.6 1131 50.0
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 2.2e-256 889.8 1117 48.9
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 2.2e-256 889.8 1112 50.6
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 3.7e-256 889.0 1125 48.4
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 2.1e-254 883.2 1114 50.7
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 3.9e-253 879.0 1110 47.5
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 2.5e-252 876.3 1110 49.2
Haze_16219 Corylus avellana HOM05D003502 ORTHO05D004250 3.6e-251 872.5 1199 48.1
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 1.2e-246 857.4 1114 49.5
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 1.6e-246 857.1 1114 47.6
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 6.0e-246 855.1 1114 44.6
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 8.7e-245 851.3 1125 49.5
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 1.5e-244 850.5 1115 48.4
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 1.9e-244 850.1 1117 48.7
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 3.3e-244 849.4 1110 46.9
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 4.3e-244 849.0 1112 49.2
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 4.3e-244 849.0 1115 48.6
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 9.6e-244 847.8 1112 49.1
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 1.6e-243 847.0 1108 47.2
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 1.6e-243 847.0 1108 47.4
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 3.6e-243 845.9 1121 48.2
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 4.8e-243 845.5 1176 46.2
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 6.2e-243 845.1 1112 49.0
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 1.1e-242 844.3 1114 48.7
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 3.1e-242 842.8 1125 47.8
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 3.1e-242 842.8 1119 48.5
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 4.0e-242 842.4 1118 47.6
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 6.9e-242 841.6 1116 48.5
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 1.2e-241 840.9 1114 48.6
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 4.4e-241 839.0 1117 48.2
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 7.6e-241 838.2 1116 48.7
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 4.9e-240 835.5 1116 47.8
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 1.9e-239 833.6 1114 48.4
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 2.4e-239 833.2 1113 49.0
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 3.2e-239 832.8 1121 47.7
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 2.7e-238 829.7 1121 47.5
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 2.7e-238 829.7 1120 47.4
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 3.5e-238 829.3 1125 49.1
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 3.0e-237 826.2 1121 48.8
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 6.6e-237 825.1 1113 48.1
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 6.6e-237 825.1 1122 47.9
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 1.5e-236 823.9 1111 47.5
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 7.3e-236 821.6 1124 48.7
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 1.6e-235 820.5 1125 48.1
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 2.4e-234 816.6 1114 47.1
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 5.3e-234 815.5 1113 48.0
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 5.3e-234 815.5 1001 50.0
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 1.5e-233 813.9 1118 48.0
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 2.9e-232 809.7 1116 43.4
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 3.8e-232 809.3 1115 48.0
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.3e-229 800.8 1000 50.0
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.3e-229 800.8 1112 47.9
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.8e-229 800.4 1112 48.2
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.5e-228 797.3 1000 49.8
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 6.9e-226 788.5 1115 46.5
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 6.9e-226 788.5 1110 45.8
FAN03G0354 Fragaria x ananassa HOM05D003502 ORTHO05D004250 2.5e-223 780.0 935 49.6
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 2.5e-223 780.0 1116 46.9
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 2.7e-222 776.5 1110 46.7
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 4.6e-222 775.8 1001 50.1
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 7.9e-222 775.0 1109 46.9
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 3.0e-221 773.1 1064 47.6
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 4.8e-219 765.8 1067 47.7
ATR0561G216 Amborella trichopoda HOM05D003502 ORTHO05D004250 1.8e-218 763.8 949 51.8
Glyma.20G069700 Glycine max HOM05D003502 ORTHO05D004250 5.9e-217 758.8 908 50.0
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 1.7e-216 757.3 1116 45.5
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 1.7e-216 757.3 1116 45.5
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 2.5e-215 753.4 1121 46.1
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 2.7e-214 750.0 1010 47.8
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 4.6e-214 749.2 994 48.4
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 4.6e-214 749.2 994 48.4
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 3.9e-213 746.1 1114 45.4
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 1.5e-212 744.2 994 47.9
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 2.5e-212 743.4 994 48.3
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 3.3e-212 743.0 994 47.9
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 2.2e-211 740.3 948 49.5
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 2.8e-211 740.0 993 47.3
SalBow6G5501 Salvia bowleyana HOM05D003502 ORTHO05D004250 2.4e-210 736.9 980 46.3
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 9.0e-210 734.9 998 47.1
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 2.6e-209 733.4 991 46.9
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 2.6e-209 733.4 1107 44.4
TAR624G0570 Trochodendron aralioides HOM05D003502 ORTHO05D004250 7.9e-198 695.3 819 49.0
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 8.8e-197 691.8 993 44.7
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 1.1e-196 691.4 1121 45.6
Psat6g094760 Pisum sativum HOM05D003502 ORTHO05D004250 5.0e-192 676.0 902 44.8
Sc06g0007830 Simmondsia chinensis HOM05D003502 ORTHO05D004250 1.1e-188 664.8 924 48.4
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 5.5e-183 646.0 1019 45.4
SHI02505 Sapria himalayana HOM05D003502 ORTHO05D004250 8.0e-182 642.1 853 43.5
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 8.8e-181 638.6 993 44.9
arahy.Tifrunner.gnm1.ann1.FUJ27D Arachis hypogaea HOM05D003502 ORTHO05D004250 4.4e-180 636.3 1118 41.8
Peaxi162Scf00745g00859 Petunia axillaris HOM05D003502 ORTHO05D004250 1.2e-172 611.7 898 42.7
CDE06G0840 Ceratophyllum demersum HOM05D000250 ORTHO05D002477 3.1e-170 603.6 940 46.7
Mapoly0102s0001 Marchantia polymorpha HOM05D003502 ORTHO05D004250 5.4e-170 602.8 1143 37.3
Solyc03g096890.3 Solanum lycopersicum HOM05D003502 ORTHO05D004250 1.6e-169 601.3 899 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1826 Anthoceros agrestis HOM05D003502 ORTHO05D004250 2.3e-165 587.4 1143 38.6
FvH4_5g14110 Fragaria vesca HOM05D003502 ORTHO05D004250 1.7e-163 581.3 775 44.4
AUR62029697 Chenopodium quinoa HOM05D003502 ORTHO05D004250 1.4e-157 561.6 946 42.8
EL10Ac1g00998 Beta vulgaris HOM05D003502 ORTHO05D004250 5.8e-156 556.2 995 37.5
Pp3c6_25960 Physcomitrium patens HOM05D003502 ORTHO05D004250 1.4e-154 551.6 1143 38.9
SEGI_11487 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 3.5e-153 547.0 682 47.4
SEGI_34091 Sequoiadendron giganteum HOM05D003502 ORTHO05D004250 3.5e-153 547.0 682 47.4
BolC5t32137H Brassica oleracea HOM05D003502 ORTHO05D004250 1.0e-144 518.8 853 43.8
C05p34020 Brassica napus HOM05D003502 ORTHO05D004250 7.1e-138 496.1 853 42.6
Gorai.012G007600 Gossypium raimondii HOM05D003502 ORTHO05D004250 6.7e-120 436.4 669 42.2
CDE06G0571 Ceratophyllum demersum HOM05D003502 ORTHO05D004250 2.8e-102 377.9 574 41.5
AUR62006364 Chenopodium quinoa HOM05D003502 ORTHO05D004250 2.8e-102 377.9 821 34.0
BcaC05g27448 Brassica carinata HOM05D003502 ORTHO05D004250 4.5e-92 344.0 533 39.2
Cpa.g.c41347 Carica papaya HOM05D003502 ORTHO05D004250 5.5e-82 310.5 325 51.7
Duzib106G1276 Durio zibethinus HOM05D003502 ORTHO05D004250 8.2e-78 296.6 625 35.5
PSO419G0001 Papaver somniferum HOM05D003502 ORTHO05D004250 1.6e-76 292.4 308 58.1
TAR624G1438 Trochodendron aralioides HOM05D003502 ORTHO05D004250 7.0e-69 266.9 282 69.1
ECA248G0871 Erigeron canadensis HOM05D003502 ORTHO05D004250 5.4e-61 240.7 743 29.1
Pp3c5_3010 Physcomitrium patens HOM05D003502 ORTHO05D004250 8.0e-49 200.3 351 36.5
BcaC01g01219 Brassica carinata HOM05D003502 ORTHO05D004250 3.0e-48 198.4 260 43.8
Actinidia21879 Actinidia chinensis HOM05D003502 ORTHO05D004250 3.7e-46 191.4 222 64.4
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 3.2e-45 188.3 290 55.9
ECA247G1432 Erigeron canadensis HOM05D003502 ORTHO05D004250 5.9e-44 184.1 803 25.8
ECA248G3707 Erigeron canadensis HOM05D003502 ORTHO05D004250 5.2e-40 171.0 288 57.3
HanXRQChr05g0148841 Helianthus annuus HOM05D003502 ORTHO05D004250 1.7e-38 166.0 304 33.6
Peaxi162Scf00745g00858 Petunia axillaris HOM05D003502 ORTHO05D010567 6.4e-38 164.1 129 65.1
HPP92_008321 Vanilla planifolia HOM05D003502 ORTHO05D004250 6.4e-38 164.1 88 95.5
PSO339G1860 Papaver somniferum HOM05D003502 ORTHO05D010567 7.0e-37 160.6 126 63.5
Psat6g094840 Pisum sativum HOM05D003502 ORTHO05D004250 1.1e-34 153.3 130 56.2
COL.COLO4_28859 Corchorus olitorius HOM05D003502 ORTHO05D004250 1.2e-33 149.8 209 56.0
Lsat_1_v5_gn_6_110460 Lactuca sativa HOM05D003502 ORTHO05D004250 1.1e-32 146.7 215 42.3
Psat4g073680 Pisum sativum HOM05D003502 ORTHO05D004250 2.3e-32 145.6 129 53.5
Cpa.g.sc794.1 Carica papaya HOM05D003502 ORTHO05D004250 2.1e-28 132.5 209 40.2
Lj3A923T57 Lonicera japonica HOM05D003502 ORTHO05D004250 1.4e-24 119.8 86 72.1
Cpa.g.c44189 Carica papaya HOM05D003502 ORTHO05D004250 4.1e-21 108.2 160 41.9
Lj3C923G18 Lonicera japonica HOM05D003502 ORTHO05D004250 7.1e-21 107.5 117 49.6
PGSC0003DMG400000538 Solanum tuberosum HOM05D003502 ORTHO05D004250 4.6e-20 104.8 82 62.2
HanXRQChr16g0510941 Helianthus annuus HOM05D003502 ORTHO05D004250 6.0e-20 104.4 107 51.4
Actinidia21650 Actinidia chinensis HOM05D003502 ORTHO05D004250 7.8e-20 104.0 203 47.3
PRCOL_00004072 Prasinoderma coloniale HOM05D003502 ORTHO05D004250 3.6e-17 95.1 278 45.7
CBR_g46859 Chara braunii HOM05D003502 ORTHO05D004250 4.7e-17 94.7 394 23.9
BolC4t25335H Brassica oleracea HOM05D000236 ORTHO05D005787 4.0e-16 91.7 273 31.5
HanXRQChr17g0543411 Helianthus annuus HOM05D003502 ORTHO05D010567 2.0e-15 89.4 85 56.5
EL10Ac7g17066 Beta vulgaris HOM05D003502 ORTHO05D004250 7.6e-15 87.4 92 50.0
SHI02509 Sapria himalayana HOM05D003502 ORTHO05D010567 8.4e-14 84.0 83 50.6
C06p05280 Brassica napus HOM05D008752 ORTHO05D010567 1.1e-13 83.6 80 50.0
CsaV3_5G005300 Cucumis sativus L. HOM05D003502 ORTHO05D010567 1.1e-13 83.6 83 48.2
Cre09.g412750 Chlamydomonas reinhardtii HOM05D003502 ORTHO05D004250 7.1e-13 80.9 128 39.8
MBI19_g33447_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 1.2e-12 80.1 75 60.0
BcaC08g43206 Brassica carinata HOM05D003502 ORTHO05D010567 6.0e-12 77.8 80 46.2
MBI10_g40701_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 2.3e-11 75.9 51 72.5
BcaC08g43210 Brassica carinata HOM05D003502 ORTHO05D010567 5.1e-11 74.7 66 53.0
BolC6t35637H Brassica oleracea HOM05D008752 ORTHO05D010567 5.1e-11 74.7 66 53.0
BraA06t23538Z Brassica rapa HOM05D008752 ORTHO05D010567 5.1e-11 74.7 66 53.0
A06p03270 Brassica napus HOM05D008752 ORTHO05D010567 1.9e-10 72.8 66 51.5
C06p05300 Brassica napus HOM05D003502 ORTHO05D010567 1.9e-10 72.8 65 52.3
AUR62008741 Chenopodium quinoa HOM05D003502 ORTHO05D004250 3.6e-09 68.6 131 35.1
BolC6t35638H Brassica oleracea HOM05D003502 ORTHO05D010567 2.2e-06 59.3 80 43.8


User provided reference genes

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