Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007574 Vanilla planifolia HOM05D003257 ORTHO05D003749 4.0e-72 274.6 135 100.0
Sed0024427 Sechium edule HOM05D003257 ORTHO05D003749 6.2e-25 117.9 75 76.0
MELO3C020408.2 Cucumis melo HOM05D003257 ORTHO05D003749 1.1e-24 117.1 75 76.0
CsaV3_2G011840 Cucumis sativus L. HOM05D003257 ORTHO05D003749 1.4e-24 116.7 75 76.0
Sed0018493 Sechium edule HOM05D003257 ORTHO05D003749 6.9e-24 114.4 75 74.7
CiPaw.01G204000 Carya illinoinensis HOM05D003257 ORTHO05D003749 9.0e-24 114.0 75 73.3
Rhsim09G0000900 Rhododendron simsii HOM05D003257 ORTHO05D003749 4.5e-23 111.7 73 74.0
Dinv24735 Davidia involucrata HOM05D003257 ORTHO05D003749 5.8e-23 111.3 76 72.4
unitig_27.g25139 Utricularia gibba HOM05D003257 ORTHO05D003749 9.9e-23 110.5 75 72.0
MSTRG.24536 Avicennia marina HOM05D003257 ORTHO05D003749 1.3e-22 110.2 75 72.0
PSO339G3074 Papaver somniferum HOM05D003257 ORTHO05D003749 1.3e-22 110.2 72 73.6
PSO384G1169 Papaver somniferum HOM05D003257 ORTHO05D003749 1.3e-22 110.2 72 73.6
CSS0014401 Camellia sinensis var. sinensis HOM05D003257 ORTHO05D003749 1.7e-22 109.8 73 71.2
PGR042G2645 Punica granatum HOM05D003257 ORTHO05D003749 1.7e-22 109.8 81 69.1
Actinidia18382 Actinidia chinensis HOM05D003257 ORTHO05D003749 2.2e-22 109.4 79 69.6
Oeu028194.1 Olea europaea HOM05D003257 ORTHO05D003749 2.2e-22 109.4 75 70.7
vmacro00737 Vaccinium macrocarpon HOM05D003257 ORTHO05D003749 2.2e-22 109.4 82 65.9
Aqoxy2G00629 Aquilegia oxysepala HOM05D003257 ORTHO05D003749 2.9e-22 109.0 73 72.6
Ciclev10019406m.g Citrus clementina HOM05D003257 ORTHO05D003749 2.9e-22 109.0 72 72.2
SGA_v2.0_scaffold19G08917 Striga asiatica HOM05D003257 ORTHO05D003749 2.9e-22 109.0 75 70.7
Duzib151G0199 Durio zibethinus HOM05D003257 ORTHO05D003749 3.8e-22 108.6 74 71.6
SalBow6G1509 Salvia bowleyana HOM05D003257 ORTHO05D003749 3.8e-22 108.6 75 70.7
ATR0053G017 Amborella trichopoda HOM05D003257 ORTHO05D003749 4.9e-22 108.2 73 69.9
arahy.Tifrunner.gnm1.ann1.BPEV7T Arachis hypogaea HOM05D003257 ORTHO05D003749 4.9e-22 108.2 75 72.0
arahy.Tifrunner.gnm1.ann1.ZYH4BX Arachis hypogaea HOM05D003257 ORTHO05D003749 4.9e-22 108.2 75 72.0
CSS0029511 Camellia sinensis var. sinensis HOM05D003257 ORTHO05D003749 4.9e-22 108.2 73 69.9
COL.COLO4_34333 Corchorus olitorius HOM05D003257 ORTHO05D003749 4.9e-22 108.2 77 68.8
PGSC0003DMG400016168 Solanum tuberosum HOM05D003257 ORTHO05D003749 4.9e-22 108.2 73 71.2
CAN.G694.27 Capsicum annuum HOM05D003257 ORTHO05D003749 6.4e-22 107.8 73 68.5
COL.COLO4_20225 Corchorus olitorius HOM05D003257 ORTHO05D003749 6.4e-22 107.8 77 68.8
CiPaw.02G126200 Carya illinoinensis HOM05D003257 ORTHO05D003749 8.4e-22 107.5 74 70.3
Eucgr.A00394 Eucalyptus grandis HOM05D003257 ORTHO05D003749 8.4e-22 107.5 82 67.1
Gohir.D10G138300 Gossypium hirsutum HOM05D003257 ORTHO05D003749 8.4e-22 107.5 73 72.6
Gorai.011G153400 Gossypium raimondii HOM05D003257 ORTHO05D003749 8.4e-22 107.5 73 72.6
Peaxi162Scf00344g00056 Petunia axillaris HOM05D003257 ORTHO05D003749 8.4e-22 107.5 73 71.2
Zm00001eb062180 Zea mays HOM05D003257 ORTHO05D003749 8.4e-22 107.5 73 72.6
CSS0030539 Camellia sinensis var. sinensis HOM05D003257 ORTHO05D003749 1.1e-21 107.1 73 69.9
CANSAT56G2399 Cannabis sativa HOM05D003257 ORTHO05D003749 1.1e-21 107.1 72 70.8
Cpa.g.sc9.233 Carica papaya HOM05D003257 ORTHO05D003749 1.1e-21 107.1 73 68.5
Cfa008541 Carpinus fangiana HOM05D003257 ORTHO05D003749 1.1e-21 107.1 74 71.6
QL10p065198 Quercus lobata HOM05D003257 ORTHO05D003749 1.1e-21 107.1 73 72.6
Solyc05g055730.4 Solanum lycopersicum HOM05D003257 ORTHO05D003749 1.1e-21 107.1 73 68.5
Sopen05g034140 Solanum pennellii HOM05D003257 ORTHO05D003749 1.1e-21 107.1 73 68.5
PGSC0003DMG400023361 Solanum tuberosum HOM05D003257 ORTHO05D003749 1.1e-21 107.1 73 68.5
Duzib212G0020 Durio zibethinus HOM05D003257 ORTHO05D003749 1.4e-21 106.7 74 70.3
Thecc.04G195400 Theobroma cacao HOM05D003257 ORTHO05D003749 1.4e-21 106.7 74 71.6
Haze_11091 Corylus avellana HOM05D003257 ORTHO05D003749 1.9e-21 106.3 74 71.6
Nn1g09394 Nelumbo nucifera HOM05D003257 ORTHO05D003749 1.9e-21 106.3 73 69.9
Sc25g0002280 Simmondsia chinensis HOM05D003257 ORTHO05D003749 1.9e-21 106.3 73 71.2
Solyc11g008870.2 Solanum lycopersicum HOM05D003257 ORTHO05D003749 1.9e-21 106.3 73 69.9
Sopen11g004650 Solanum pennellii HOM05D003257 ORTHO05D003749 1.9e-21 106.3 73 69.9
TWI15G1037 Tripterygium wilfordii HOM05D003257 ORTHO05D003749 1.9e-21 106.3 76 68.4
TAR362G0403 Trochodendron aralioides HOM05D003257 ORTHO05D003749 1.9e-21 106.3 75 69.3
Duzib268G1600 Durio zibethinus HOM05D003257 ORTHO05D003749 2.4e-21 105.9 74 70.3
Gohir.A10G127700 Gossypium hirsutum HOM05D003257 ORTHO05D003749 2.4e-21 105.9 73 71.2
Mapoly0107s0040 Marchantia polymorpha HOM05D003257 ORTHO05D003749 2.4e-21 105.9 73 69.9
Nn7g37414 Nelumbo nucifera HOM05D003257 ORTHO05D003749 2.4e-21 105.9 73 69.9
TAR633G0285 Trochodendron aralioides HOM05D003257 ORTHO05D003749 2.4e-21 105.9 73 72.6
Gohir.A09G206300 Gossypium hirsutum HOM05D003257 ORTHO05D003749 3.2e-21 105.5 74 70.3
Gohir.D09G199900 Gossypium hirsutum HOM05D003257 ORTHO05D003749 4.2e-21 105.1 74 70.3
Gorai.006G223600 Gossypium raimondii HOM05D003257 ORTHO05D003749 4.2e-21 105.1 74 70.3
Lj3g0005174 Lotus japonicus HOM05D003257 ORTHO05D003749 4.2e-21 105.1 75 68.0
SGA_v2.0_scaffold25G11024 Striga asiatica HOM05D003257 ORTHO05D003749 4.2e-21 105.1 76 69.7
Migut.N03006 Erythranthe guttata HOM05D003257 ORTHO05D003749 5.4e-21 104.8 75 68.0
Nitab4.5_0000971g0090 Nicotiana tabacum HOM05D003257 ORTHO05D003749 5.4e-21 104.8 73 67.1
Nitab4.5_0003263g0060 Nicotiana tabacum HOM05D003257 ORTHO05D003749 5.4e-21 104.8 73 67.1
Peaxi162Scf00156g00015 Petunia axillaris HOM05D003257 ORTHO05D003749 5.4e-21 104.8 73 68.5
RcHm_v2.0_Chr2g0084261 Rosa chinensis HOM05D003257 ORTHO05D003749 5.4e-21 104.8 74 70.3
Lju124A8T11 Lonicera japonica HOM05D003257 ORTHO05D003749 7.1e-21 104.4 74 70.3
Nitab4.5_0001653g0120 Nicotiana tabacum HOM05D003257 ORTHO05D003749 7.1e-21 104.4 74 70.3
Nitab4.5_0006595g0040 Nicotiana tabacum HOM05D003257 ORTHO05D003749 7.1e-21 104.4 74 70.3
CAN.G1177.14 Capsicum annuum HOM05D003257 ORTHO05D003749 9.3e-21 104.0 73 67.1
CDE06G0339 Ceratophyllum demersum HOM05D003257 ORTHO05D003749 9.3e-21 104.0 73 68.5
DCAR_005464 Daucus carota HOM05D003257 ORTHO05D003749 9.3e-21 104.0 77 67.5
Lsat_1_v5_gn_7_3921 Lactuca sativa HOM05D003257 ORTHO05D003749 9.3e-21 104.0 76 69.7
Lalb_Chr01g0020651 Lupinus albus HOM05D003257 ORTHO05D003749 9.3e-21 104.0 74 71.6
Os03g0815200 Oryza sativa ssp. japonica HOM05D003257 ORTHO05D003749 9.3e-21 104.0 73 68.5
Sc19g0002470 Simmondsia chinensis HOM05D003257 ORTHO05D003749 9.3e-21 104.0 73 67.1
Ah.07g203400 Amaranthus hybridus HOM05D003257 ORTHO05D003749 1.2e-20 103.6 73 68.5
EL10Ac3g06195 Beta vulgaris HOM05D003257 ORTHO05D003749 1.2e-20 103.6 73 69.9
Nitab4.5_0006595g0030 Nicotiana tabacum HOM05D003257 ORTHO05D003749 1.2e-20 103.6 74 71.6
Glyma.04G256100 Glycine max HOM05D003257 ORTHO05D003749 1.6e-20 103.2 74 68.9
Medtr1g040105 Medicago truncatula HOM05D003257 ORTHO05D003749 1.6e-20 103.2 74 68.9
Pp3c10_24030 Physcomitrium patens HOM05D003257 ORTHO05D003749 1.6e-20 103.2 73 67.1
Potri.007G147300 Populus trichocarpa HOM05D003257 ORTHO05D003749 1.6e-20 103.2 87 60.9
TPR.G30222 Trifolium pratense HOM05D003257 ORTHO05D003749 1.6e-20 103.2 74 68.9
Atru.chr3.2621 Acer truncatum HOM05D003257 ORTHO05D003749 2.1e-20 102.8 75 68.0
FAN23G0512 Fragaria x ananassa HOM05D003257 ORTHO05D003749 2.1e-20 102.8 74 68.9
Lalb_Chr03g0037991 Lupinus albus HOM05D003257 ORTHO05D003749 2.1e-20 102.8 74 68.9
MD15G1141700 Malus domestica HOM05D003257 ORTHO05D003749 2.1e-20 102.8 74 68.9
Pp3c24_960 Physcomitrium patens HOM05D003257 ORTHO05D003749 2.1e-20 102.8 73 67.1
Hund22666 Selenicereus undatus HOM05D003257 ORTHO05D003749 2.1e-20 102.8 73 68.5
CDE07G1142 Ceratophyllum demersum HOM05D003257 ORTHO05D003749 2.7e-20 102.4 73 68.5
Ca_26297_v3 Cicer arietinum L. HOM05D003257 ORTHO05D003749 2.7e-20 102.4 74 68.9
VMungo0647G2577 Vigna mungo HOM05D003257 ORTHO05D003749 2.7e-20 102.4 74 67.6
AUR62002512 Chenopodium quinoa HOM05D003257 ORTHO05D003749 3.5e-20 102.1 73 65.8
AUR62023682 Chenopodium quinoa HOM05D003257 ORTHO05D003749 3.5e-20 102.1 73 65.8
FvH4_1g00040 Fragaria vesca HOM05D003257 ORTHO05D003749 3.5e-20 102.1 74 68.9
FAN26G0496 Fragaria x ananassa HOM05D003257 ORTHO05D003749 3.5e-20 102.1 74 68.9
FAN28G1981 Fragaria x ananassa HOM05D003257 ORTHO05D003749 3.5e-20 102.1 74 68.9
HanXRQChr06g0170341 Helianthus annuus HOM05D003257 ORTHO05D003749 3.5e-20 102.1 76 67.1
Prupe.7G271500 Prunus persica HOM05D003257 ORTHO05D003749 3.5e-20 102.1 74 67.6
MD00G1145100 Malus domestica HOM05D003257 ORTHO05D003749 4.6e-20 101.7 74 67.6
MD02G1001200 Malus domestica HOM05D003257 ORTHO05D003749 4.6e-20 101.7 74 67.6
Phvul.007G281200 Phaseolus vulgaris HOM05D003257 ORTHO05D003749 4.6e-20 101.7 74 66.2
Psat6g101800 Pisum sativum HOM05D003257 ORTHO05D003749 4.6e-20 101.7 74 67.6
THA.LOC104804412 Tarenaya hassleriana HOM05D003257 ORTHO05D003749 6.0e-20 101.3 73 65.8
AL4G43040 Arabidopsis lyrata HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
AT2G44160 Arabidopsis thaliana HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
BcaB01g03327 Brassica carinata HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
A05p04270 Brassica napus HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
C04p05050 Brassica napus HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
BolC4t22138H Brassica oleracea HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
BraA05t19412Z Brassica rapa HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
Carub.0004s2671 Capsella rubella HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
CARHR139330 Cardamine hirsuta HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
DCAR_027487 Daucus carota HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 68.5
Thhalv10001367m.g Eutrema salsugineum HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
HanXRQChr04g0120771 Helianthus annuus HOM05D003257 ORTHO05D003749 7.9e-20 100.9 76 67.1
Manes.01G008800 Manihot esculenta HOM05D003257 ORTHO05D003749 7.9e-20 100.9 89 59.6
Sp4g26240 Schrenkiella parvula HOM05D003257 ORTHO05D003749 7.9e-20 100.9 73 65.8
Aa31LG1G25830 Aethionema arabicum HOM05D003257 ORTHO05D003749 1.0e-19 100.5 73 65.8
A09p52310 Brassica napus HOM05D003257 ORTHO05D003749 1.8e-19 99.8 72 63.9
C08p34970 Brassica napus HOM05D003257 ORTHO05D003749 1.8e-19 99.8 72 63.9
BraA09t40660Z Brassica rapa HOM05D003257 ORTHO05D003749 1.8e-19 99.8 72 63.9
Glyma.06G325300 Glycine max HOM05D003257 ORTHO05D003749 1.8e-19 99.8 74 66.2
BcaC07g40402 Brassica carinata HOM05D003257 ORTHO05D003749 2.3e-19 99.4 72 63.9
CANSAT54G2167 Cannabis sativa HOM05D003257 ORTHO05D003749 2.3e-19 99.4 72 68.1
Potri.017G000300 Populus trichocarpa HOM05D003257 ORTHO05D003749 2.3e-19 99.4 84 60.7
SMO367G0955 Selaginella moellendorffii HOM05D003257 ORTHO05D003749 2.3e-19 99.4 73 61.6
THA.LOC104802525 Tarenaya hassleriana HOM05D003257 ORTHO05D003749 2.3e-19 99.4 73 64.4
SalBow3G3990 Salvia bowleyana HOM05D003257 ORTHO05D003749 3.0e-19 99.0 73 65.8
Sabra17G0005200 Salix brachista HOM05D003257 ORTHO05D003749 3.9e-19 98.6 90 57.8
BcaB02g07437 Brassica carinata HOM05D003257 ORTHO05D003749 5.1e-19 98.2 72 62.5
BcaC07g40537 Brassica carinata HOM05D003257 ORTHO05D003749 5.1e-19 98.2 72 62.5
BcaC08g45017 Brassica carinata HOM05D003257 ORTHO05D003749 5.1e-19 98.2 72 62.5
A07p24920 Brassica napus HOM05D003257 ORTHO05D003749 5.1e-19 98.2 73 61.6
C06p26490 Brassica napus HOM05D003257 ORTHO05D003749 5.1e-19 98.2 72 62.5
BolC6t37812H Brassica oleracea HOM05D003257 ORTHO05D003749 5.1e-19 98.2 72 62.5
BolC8t51101H Brassica oleracea HOM05D003257 ORTHO05D003749 5.1e-19 98.2 72 62.5
BraA07t30134Z Brassica rapa HOM05D003257 ORTHO05D003749 5.1e-19 98.2 72 62.5
ECA236G5120 Erigeron canadensis HOM05D003257 ORTHO05D003749 5.1e-19 98.2 76 63.2
SEGI_28465 Sequoiadendron giganteum HOM05D003257 ORTHO05D003749 5.1e-19 98.2 115 49.6
Aa31LG10G14190 Aethionema arabicum HOM05D003257 ORTHO05D003749 6.7e-19 97.8 73 63.0
AagrBONN_evm.TU.Sc2ySwM_344.3446 Anthoceros agrestis HOM05D003257 ORTHO05D003749 6.7e-19 97.8 115 47.8
Lj6g0016848 Lotus japonicus HOM05D003257 ORTHO05D003749 6.7e-19 97.8 74 64.9
SGA_v2.0_scaffold12G06250 Striga asiatica HOM05D003257 ORTHO05D003749 8.7e-19 97.4 73 65.8
AL5G42150 Arabidopsis lyrata HOM05D003257 ORTHO05D003749 1.1e-18 97.1 73 60.3
AT3G59970 Arabidopsis thaliana HOM05D003257 ORTHO05D003749 1.1e-18 97.1 73 60.3
Carub.0005s2670 Capsella rubella HOM05D003257 ORTHO05D003749 1.1e-18 97.1 73 60.3
CARHR170290 Cardamine hirsuta HOM05D003257 ORTHO05D003749 1.1e-18 97.1 73 60.3
Thhalv10005854m.g Eutrema salsugineum HOM05D003257 ORTHO05D003749 1.1e-18 97.1 73 60.3
BcaB06g29359 Brassica carinata HOM05D003257 ORTHO05D003749 1.5e-18 96.7 73 61.6
BcaB06g29361 Brassica carinata HOM05D003257 ORTHO05D003749 1.5e-18 96.7 73 61.6
A04p33220 Brassica napus HOM05D003257 ORTHO05D003749 1.5e-18 96.7 73 61.6
C04p70910 Brassica napus HOM05D003257 ORTHO05D003749 1.5e-18 96.7 73 61.6
BraA04t18781Z Brassica rapa HOM05D003257 ORTHO05D003749 1.5e-18 96.7 73 61.6
MBI15_g33460_MAGBIO Magnolia biondii HOM05D003257 ORTHO05D003749 1.9e-18 96.3 56 76.8
Sp5g03210 Schrenkiella parvula HOM05D003257 ORTHO05D003749 2.5e-18 95.9 73 58.9
Hma1.2p1_1372F.1_g278690 Hydrangea macrophylla HOM05D003257 ORTHO05D003749 3.3e-18 95.5 71 66.2
CBR_g37215 Chara braunii HOM05D003257 ORTHO05D003749 3.6e-17 92.0 115 48.7
Cre10.g433600 Chlamydomonas reinhardtii HOM05D003257 ORTHO05D003749 3.6e-17 92.0 73 58.9
Zm00001eb440700 Zea mays HOM05D003257 ORTHO05D003749 1.1e-16 90.5 55 78.2
PRCOL_00004214 Prasinoderma coloniale HOM05D003257 ORTHO05D003749 1.4e-16 90.1 116 48.3
MBI15_g33461_MAGBIO Magnolia biondii HOM05D003257 ORTHO05D003749 2.4e-16 89.4 56 69.6
FvH4_1g08980 Fragaria vesca HOM05D003257 ORTHO05D003749 3.4e-15 85.5 73 63.0
FAN19G0462 Fragaria x ananassa HOM05D003257 ORTHO05D003749 3.4e-15 85.5 73 63.0
FAN23G0954 Fragaria x ananassa HOM05D003257 ORTHO05D003749 9.9e-15 84.0 73 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1519 Anthoceros agrestis HOM05D003257 ORTHO05D003749 9.3e-13 77.4 105 43.8
AUR62002511 Chenopodium quinoa HOM05D003257 ORTHO05D003749 1.2e-12 77.0 72 52.8
MBI05_g03438_MAGBIO Magnolia biondii HOM05D003257 ORTHO05D003749 1.6e-12 76.6 72 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3164 Anthoceros agrestis HOM05D003257 ORTHO05D003749 2.1e-12 76.3 115 41.7
AagrBONN_evm.TU.Sc2ySwM_344.1685 Anthoceros agrestis HOM05D003257 ORTHO05D003749 1.0e-11 73.9 115 40.9
Phvul.006G222101 Phaseolus vulgaris HOM05D003257 ORTHO05D003749 5.1e-11 71.6 36 80.6
Eucgr.A00395 Eucalyptus grandis HOM05D003257 ORTHO05D003749 6.7e-11 71.2 77 44.2
GSVIVG01019374001 Vitis vinifera HOM05D003257 ORTHO05D003749 2.1e-09 66.2 33 81.8
AUR62004352 Chenopodium quinoa HOM05D003257 ORTHO05D003749 4.8e-09 65.1 73 47.9
AUR62022557 Chenopodium quinoa HOM05D003257 ORTHO05D003749 3.1e-08 62.4 72 47.2
SMO200G0039 Selaginella moellendorffii HOM05D003257 ORTHO05D003749 1.2e-07 60.5 73 39.7
FAN26G2639 Fragaria x ananassa HOM05D003257 ORTHO05D003749 1.7e-06 56.6 33 78.8
FAN26G2889 Fragaria x ananassa HOM05D003257 ORTHO05D003749 1.7e-06 56.6 33 78.8


User provided reference genes

Program Settings