Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007375 Vanilla planifolia HOM05D004324 ORTHO05D004840 4.3e-192 674.5 338 100.0
Nn1g01122 Nelumbo nucifera HOM05D004324 ORTHO05D004840 2.6e-173 612.1 337 88.4
Cpa.g.sc145.18 Carica papaya HOM05D004324 ORTHO05D004840 2.9e-172 608.6 335 88.4
Manes.01G267300 Manihot esculenta HOM05D004324 ORTHO05D004840 2.9e-172 608.6 335 89.6
Potri.014G067700 Populus trichocarpa HOM05D004324 ORTHO05D004840 8.4e-172 607.1 333 89.8
Hma1.2p1_0442F.1_g153860 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 2.5e-171 605.5 335 87.5
Ciclev10021006m.g Citrus clementina HOM05D004324 ORTHO05D004840 3.2e-171 605.1 335 88.1
Potri.002G146200 Populus trichocarpa HOM05D004324 ORTHO05D004840 5.5e-171 604.4 335 89.3
vmacro13417 Vaccinium macrocarpon HOM05D004324 ORTHO05D004840 9.3e-171 603.6 335 88.1
Actinidia12245 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.1e-170 602.4 337 87.8
Aa31LG9G14610 Aethionema arabicum HOM05D004324 ORTHO05D004840 2.7e-170 602.1 337 87.5
Thecc.08G173500 Theobroma cacao HOM05D004324 ORTHO05D004840 2.7e-170 602.1 334 87.7
ECA234G2725 Erigeron canadensis HOM05D004324 ORTHO05D004840 3.6e-170 601.7 338 87.9
EL10Ac1g00868 Beta vulgaris HOM05D004324 ORTHO05D004840 4.6e-170 601.3 333 88.3
Sc26g0001240 Simmondsia chinensis HOM05D004324 ORTHO05D004840 6.1e-170 600.9 331 88.5
Migut.B01616 Erythranthe guttata HOM05D004324 ORTHO05D004840 1.0e-169 600.1 335 87.2
THA.LOC104826515 Tarenaya hassleriana HOM05D004324 ORTHO05D004840 1.0e-169 600.1 335 87.5
Os04g0106300 Oryza sativa ssp. japonica HOM05D004324 ORTHO05D004840 1.3e-169 599.7 335 87.2
Manes.05G047100 Manihot esculenta HOM05D004324 ORTHO05D004840 1.8e-169 599.4 335 88.1
Eucgr.E01445 Eucalyptus grandis HOM05D004324 ORTHO05D004840 2.3e-169 599.0 333 87.7
Peaxi162Scf00013g03018 Petunia axillaris HOM05D004324 ORTHO05D004840 3.0e-169 598.6 335 87.8
PGR042G0702 Punica granatum HOM05D004324 ORTHO05D004840 3.0e-169 598.6 335 86.9
GSVIVG01027662001 Vitis vinifera HOM05D004324 ORTHO05D004840 8.7e-169 597.0 336 86.3
MD07G1119200 Malus domestica HOM05D004324 ORTHO05D004840 1.1e-168 596.7 335 87.5
Cc02_g24110 Coffea canephora HOM05D004324 ORTHO05D004840 1.5e-168 596.3 337 86.6
Gorai.009G265900 Gossypium raimondii HOM05D004324 ORTHO05D004840 1.5e-168 596.3 333 87.1
Duzib177G0253 Durio zibethinus HOM05D004324 ORTHO05D004840 2.5e-168 595.5 335 86.6
Gohir.D05G254400 Gossypium hirsutum HOM05D004324 ORTHO05D004840 3.3e-168 595.1 333 86.8
Atru.chr5.282 Acer truncatum HOM05D004324 ORTHO05D004840 4.3e-168 594.7 335 86.9
COL.COLO4_24610 Corchorus olitorius HOM05D004324 ORTHO05D004840 4.3e-168 594.7 334 86.8
Lsat_1_v5_gn_4_43080 Lactuca sativa HOM05D004324 ORTHO05D004840 4.3e-168 594.7 338 86.7
RcHm_v2.0_Chr1g0349771 Rosa chinensis HOM05D004324 ORTHO05D004840 4.3e-168 594.7 335 86.9
SGA_v2.0_scaffold153G36989 Striga asiatica HOM05D004324 ORTHO05D004840 4.3e-168 594.7 338 85.8
HanXRQChr16g0519961 Helianthus annuus HOM05D004324 ORTHO05D004840 5.7e-168 594.3 335 86.6
Nitab4.5_0000457g0100 Nicotiana tabacum HOM05D004324 ORTHO05D004840 5.7e-168 594.3 335 86.3
CiPaw.01G263900 Carya illinoinensis HOM05D004324 ORTHO05D004840 7.4e-168 594.0 335 85.4
TWI59G0845 Tripterygium wilfordii HOM05D004324 ORTHO05D004840 9.7e-168 593.6 335 85.7
FAN03G2758 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.3e-167 593.2 333 87.1
FAN06G1729 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.3e-167 593.2 333 87.1
FAN06G4220 Fragaria x ananassa HOM05D004324 ORTHO05D004840 1.3e-167 593.2 333 87.1
SalBow5G2819 Salvia bowleyana HOM05D004324 ORTHO05D004840 1.3e-167 593.2 337 85.8
Duzib268G1605 Durio zibethinus HOM05D004324 ORTHO05D004840 1.6e-167 592.8 335 85.7
QL08p052832 Quercus lobata HOM05D004324 ORTHO05D004840 3.7e-167 591.7 334 86.8
Sp6g08900 Schrenkiella parvula HOM05D004324 ORTHO05D004840 3.7e-167 591.7 338 85.8
Dinv32365 Davidia involucrata HOM05D004324 ORTHO05D004840 4.8e-167 591.3 335 86.0
FAN01G0081 Fragaria x ananassa HOM05D004324 ORTHO05D004840 6.3e-167 590.9 333 86.8
AL6G41660 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 8.2e-167 590.5 338 86.1
AT4G08900 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 8.2e-167 590.5 338 86.1
A03p28290 Brassica napus HOM05D004324 ORTHO05D004840 8.2e-167 590.5 338 85.5
MSTRG.17174 Avicennia marina HOM05D004324 ORTHO05D004840 1.1e-166 590.1 335 85.4
CARHR259850 Cardamine hirsuta HOM05D004324 ORTHO05D004840 1.1e-166 590.1 338 86.4
Aqoxy7G00682 Aquilegia oxysepala HOM05D004324 ORTHO05D004840 1.4e-166 589.7 335 85.7
BraA03t12035Z Brassica rapa HOM05D004324 ORTHO05D004840 1.4e-166 589.7 338 85.5
Nitab4.5_0010616g0050 Nicotiana tabacum HOM05D004324 ORTHO05D004840 1.4e-166 589.7 335 85.7
TAR375G0703 Trochodendron aralioides HOM05D004324 ORTHO05D004840 1.4e-166 589.7 337 85.5
Rhsim07G0029000 Rhododendron simsii HOM05D004324 ORTHO05D004840 1.8e-166 589.3 358 82.7
PSO782G5694 Papaver somniferum HOM05D004324 ORTHO05D004840 2.4e-166 589.0 335 86.0
C03p34220 Brassica napus HOM05D004324 ORTHO05D004840 3.1e-166 588.6 338 85.2
Carub.0006s2738 Capsella rubella HOM05D004324 ORTHO05D004840 4.1e-166 588.2 338 86.1
CDE04G0300 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 4.1e-166 588.2 327 87.5
Prupe.2G142300 Prunus persica HOM05D004324 ORTHO05D004840 4.1e-166 588.2 335 85.1
BcaC01g04748 Brassica carinata HOM05D004324 ORTHO05D004840 6.9e-166 587.4 338 85.2
BolC3t15731H Brassica oleracea HOM05D004324 ORTHO05D004840 6.9e-166 587.4 338 84.9
CAN.G388.33 Capsicum annuum HOM05D004324 ORTHO05D004840 1.2e-165 586.6 334 85.6
Solyc01g091160.4 Solanum lycopersicum HOM05D004324 ORTHO05D004840 1.2e-165 586.6 335 85.4
Sopen01g036910 Solanum pennellii HOM05D004324 ORTHO05D004840 1.2e-165 586.6 335 85.4
BcaB01g02843 Brassica carinata HOM05D004324 ORTHO05D004840 3.4e-165 585.1 338 85.5
Thecc.08G173700 Theobroma cacao HOM05D004324 ORTHO05D004840 5.9e-165 584.3 334 84.4
PSO478G0881 Papaver somniferum HOM05D004324 ORTHO05D004840 7.7e-165 583.9 335 85.4
Thhalv10028793m.g Eutrema salsugineum HOM05D004324 ORTHO05D004840 3.8e-164 581.6 315 90.8
Lj3g0015076 Lotus japonicus HOM05D004324 ORTHO05D004840 5.0e-164 581.3 333 83.5
CANSAT56G0022 Cannabis sativa HOM05D004324 ORTHO05D004840 6.5e-164 580.9 333 85.0
TPR.G7599 Trifolium pratense HOM05D004324 ORTHO05D004840 8.5e-164 580.5 333 84.1
DCAR_008551 Daucus carota HOM05D004324 ORTHO05D004840 1.9e-163 579.3 326 86.8
SHI13535 Sapria himalayana HOM05D004324 ORTHO05D004840 3.2e-163 578.6 334 85.3
Hund27368 Selenicereus undatus HOM05D004324 ORTHO05D004840 3.2e-163 578.6 320 87.5
Ca_19938_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 5.5e-163 577.8 333 83.8
Lalb_Chr12g0208141 Lupinus albus HOM05D004324 ORTHO05D004840 9.4e-163 577.0 334 84.4
ClCG06G000480 Citrullus lanatus HOM05D004324 ORTHO05D004840 1.6e-162 576.2 335 83.9
Oeu055504.4 Olea europaea HOM05D004324 ORTHO05D004840 1.6e-162 576.2 374 77.5
AUR62013655 Chenopodium quinoa HOM05D004324 ORTHO05D004840 2.1e-162 575.9 333 83.2
ATR0665G432 Amborella trichopoda HOM05D004324 ORTHO05D004840 3.6e-162 575.1 333 83.2
Glyma.01G140200 Glycine max HOM05D004324 ORTHO05D004840 3.6e-162 575.1 333 83.5
CsaV3_6G006290 Cucumis sativus L. HOM05D004324 ORTHO05D004840 7.9e-162 573.9 335 83.9
CSS0002473 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 1.8e-161 572.8 315 88.6
Phvul.010G081600 Phaseolus vulgaris HOM05D004324 ORTHO05D004840 3.0e-161 572.0 333 82.9
Glyma.17G131300 Glycine max HOM05D004324 ORTHO05D004840 3.9e-161 571.6 333 83.5
Sc26g0001250 Simmondsia chinensis HOM05D004324 ORTHO05D004840 3.9e-161 571.6 328 86.0
RcHm_v2.0_Chr1g0349751 Rosa chinensis HOM05D004324 ORTHO05D004840 2.0e-160 569.3 334 84.4
AUR62004190 Chenopodium quinoa HOM05D004324 ORTHO05D004840 4.3e-160 568.2 333 82.0
Sed0016777 Sechium edule HOM05D004324 ORTHO05D004840 1.3e-159 566.6 335 83.0
CSS0015452 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.2e-159 563.9 337 81.6
CSS0042374 Camellia sinensis var. sinensis HOM05D004324 ORTHO05D004840 8.2e-159 563.9 337 81.6
unitig_899.g15094 Utricularia gibba HOM05D004324 ORTHO05D004840 8.2e-159 563.9 328 82.9
Psat0s3070g0160 Pisum sativum HOM05D004324 ORTHO05D004840 1.8e-158 562.8 333 81.7
Sopen01g036920 Solanum pennellii HOM05D004324 ORTHO05D004840 1.2e-157 560.1 335 80.0
Solyc01g091170.3 Solanum lycopersicum HOM05D004324 ORTHO05D004840 2.6e-157 558.9 335 79.7
CiPaw.02G169300 Carya illinoinensis HOM05D004324 ORTHO05D004840 4.2e-155 551.6 324 82.4
AT4G08870 Arabidopsis thaliana HOM05D004324 ORTHO05D004840 1.2e-154 550.1 341 78.3
Carub.0006s2736 Capsella rubella HOM05D004324 ORTHO05D004840 1.2e-154 550.1 341 78.3
Haze_16793 Corylus avellana HOM05D004324 ORTHO05D004840 1.2e-154 550.1 357 78.2
arahy.Tifrunner.gnm1.ann1.2VF8XD Arachis hypogaea HOM05D004324 ORTHO05D004840 1.4e-153 546.6 362 75.7
SEGI_09298 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 2.2e-151 539.3 326 80.4
arahy.Tifrunner.gnm1.ann1.J6F3FE Arachis hypogaea HOM05D004324 ORTHO05D004840 1.6e-149 533.1 386 71.0
Lj3g0002034 Lotus japonicus HOM05D004324 ORTHO05D004840 3.2e-147 525.4 333 74.2
Ah.05g174550 Amaranthus hybridus HOM05D004324 ORTHO05D004840 4.2e-147 525.0 333 75.1
Mapoly0082s0038 Marchantia polymorpha HOM05D004324 ORTHO05D004840 5.5e-147 524.6 315 79.0
SMO367G0287 Selaginella moellendorffii HOM05D004324 ORTHO05D004840 2.0e-144 516.2 330 77.9
Lj7A531T56 Lonicera japonica HOM05D004324 ORTHO05D004840 2.6e-144 515.8 337 77.2
Lj3g0008609 Lotus japonicus HOM05D004324 ORTHO05D004840 2.2e-143 512.7 333 73.3
Medtr4g024960 Medicago truncatula HOM05D004324 ORTHO05D004840 3.7e-143 511.9 333 73.9
Glyma.03G028000 Glycine max HOM05D004324 ORTHO05D004840 2.4e-142 509.2 335 72.8
Lj3g0012371 Lotus japonicus HOM05D004324 ORTHO05D004840 5.0e-140 501.5 332 71.7
TPR.G7597 Trifolium pratense HOM05D004324 ORTHO05D004840 2.1e-138 496.1 337 71.8
Pp3c5_2190 Physcomitrium patens HOM05D004324 ORTHO05D004840 2.2e-135 486.1 313 74.4
HanXRQChr16g0519941 Helianthus annuus HOM05D004324 ORTHO05D004840 7.7e-133 477.6 338 68.9
CBR_g50887 Chara braunii HOM05D004324 ORTHO05D004840 4.2e-131 471.9 327 70.3
Dinv43690 Davidia involucrata HOM05D004324 ORTHO05D004840 1.8e-121 439.9 337 68.8
Psat7g231720 Pisum sativum HOM05D004324 ORTHO05D004840 1.3e-119 433.7 319 65.8
COL.COLO4_24608 Corchorus olitorius HOM05D004324 ORTHO05D004840 9.2e-118 427.6 334 64.7
Atru.chr5.284 Acer truncatum HOM05D004324 ORTHO05D004840 1.2e-114 417.2 247 81.8
MELO3C022492.2 Cucumis melo HOM05D004324 ORTHO05D004840 2.8e-114 416.0 239 83.7
Sed0023731 Sechium edule HOM05D004324 ORTHO05D004840 2.8e-114 416.0 248 81.0
SEGI_04392 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.1e-110 404.1 249 79.1
Hma1.2p1_0375F.1_g138670 Hydrangea macrophylla HOM05D004324 ORTHO05D004840 2.7e-109 399.4 245 80.8
arahy.Tifrunner.gnm1.ann1.J17N2W Arachis hypogaea HOM05D004324 ORTHO05D004840 8.9e-105 384.4 324 62.0
Zm00001eb418690 Zea mays HOM05D004324 ORTHO05D004840 6.4e-103 378.3 208 88.5
Medtr4g024940 Medicago truncatula HOM05D004324 ORTHO05D004840 1.4e-102 377.1 225 79.1
MBI04_g35670_MAGBIO Magnolia biondii HOM05D004324 ORTHO05D004840 7.1e-102 374.8 222 82.0
FvH4_7g11450 Fragaria vesca HOM05D004324 ORTHO05D004840 7.8e-101 371.3 213 83.6
Psat6g218040 Pisum sativum HOM05D004324 ORTHO05D004840 6.0e-93 345.1 327 55.7
AL6G42680 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 2.3e-92 343.2 194 85.6
Gohir.A05G252532 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.5e-88 330.5 187 84.5
AagrBONN_evm.TU.Sc2ySwM_368.1743 Anthoceros agrestis HOM05D004324 ORTHO05D004840 7.6e-88 328.2 193 79.8
Medtr0088s0100 Medicago truncatula HOM05D004324 ORTHO05D004840 2.7e-85 319.7 321 53.3
SGA_v2.0_scaffold11G05569 Striga asiatica HOM05D004324 ORTHO05D004840 6.0e-77 292.0 242 60.7
Sc26g0001270 Simmondsia chinensis HOM05D004324 ORTHO05D004840 3.9e-76 289.3 171 81.9
Psat6g218080 Pisum sativum HOM05D004324 ORTHO05D004840 1.5e-72 277.3 195 66.7
Gohir.A05G252466 Gossypium hirsutum HOM05D004324 ORTHO05D004840 1.7e-63 247.3 135 89.6
RcHm_v2.0_Chr1g0349761 Rosa chinensis HOM05D004324 ORTHO05D004840 3.9e-60 236.1 141 80.1
AL6G42730 Arabidopsis lyrata HOM05D004324 ORTHO05D004840 1.6e-53 214.2 147 70.1
Psat6g217960 Pisum sativum HOM05D004324 ORTHO05D004840 1.4e-49 201.1 155 62.6
CDE02G4314 Ceratophyllum demersum HOM05D004324 ORTHO05D004840 4.2e-46 189.5 148 68.9
arahy.Tifrunner.gnm1.ann1.V33WN8 Arachis hypogaea HOM05D004324 ORTHO05D004840 1.0e-39 168.3 87 93.1
Actinidia02863 Actinidia chinensis HOM05D004324 ORTHO05D004840 1.1e-35 154.8 100 76.0
Duzib177G0443 Durio zibethinus HOM05D004324 ORTHO05D004840 4.1e-33 146.4 101 75.2
MD02G1206600 Malus domestica HOM05D004324 ORTHO05D004840 2.6e-32 143.7 82 80.5
CAN.G112.16 Capsicum annuum HOM05D004324 ORTHO05D004840 3.5e-32 143.3 87 81.6
MD02G1206500 Malus domestica HOM05D004324 ORTHO05D004840 6.5e-31 139.0 74 86.5
SEGI_10460 Sequoiadendron giganteum HOM05D004324 ORTHO05D004840 1.2e-29 134.8 91 72.5
CAN.G23.23 Capsicum annuum HOM05D004324 ORTHO05D004840 2.1e-29 134.0 78 79.5
Duzib106G1980 Durio zibethinus HOM05D004324 ORTHO05D004840 7.0e-25 119.0 88 70.5
Sc26g0001260 Simmondsia chinensis HOM05D004324 ORTHO05D004840 4.5e-24 116.3 127 55.1
Prupe.7G087800 Prunus persica HOM05D004324 ORTHO05D004840 3.2e-22 110.2 124 57.3
Actinidia02867 Actinidia chinensis HOM05D004324 ORTHO05D004840 6.1e-21 105.9 106 55.7
MCO07G634 Micromonas commoda HOM05D004324 ORTHO05D004840 6.8e-20 102.4 287 30.7
Pp3s30_709 Physcomitrium patens HOM05D004324 ORTHO05D004840 9.8e-19 98.6 234 29.5
Actinidia31395 Actinidia chinensis HOM05D004324 ORTHO05D004840 6.3e-18 95.9 75 65.3
Cfa025533 Carpinus fangiana HOM05D000146 ORTHO05D004840 5.4e-17 92.8 321 26.5
Psat0s13993g0040 Pisum sativum HOM05D004324 ORTHO05D004840 5.4e-17 92.8 74 63.5
Ca_28979_v3 Cicer arietinum L. HOM05D004324 ORTHO05D004840 6.5e-15 85.9 285 28.1
Cfa023222 Carpinus fangiana HOM05D004324 ORTHO05D004840 9.5e-14 82.0 266 28.9
Actinidia02866 Actinidia chinensis HOM05D004324 ORTHO05D004840 2.6e-11 73.9 103 45.6
Prupe.2G076400 Prunus persica HOM05D004324 ORTHO05D004840 1.8e-09 67.8 53 64.2
Cfa024978 Carpinus fangiana HOM05D004324 ORTHO05D034102 2.4e-09 67.4 249 26.9
Aa31sc49G50 Aethionema arabicum HOM05D004324 ORTHO05D004840 9.2e-09 65.5 45 66.7
Medtr4g019730 Medicago truncatula HOM05D000814 ORTHO05D004840 4.5e-08 63.2 42 69.0
MCO07G590 Micromonas commoda HOM05D065742 ORTHO05D034102 7.8e-08 62.4 205 27.3


User provided reference genes

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