Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 6.8e-193 677.2 344 100.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 5.3e-105 385.2 324 63.0
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 3.8e-103 379.0 303 64.7
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 5.5e-102 375.2 284 67.3
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 9.4e-102 374.4 329 62.0
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.2e-101 374.0 310 63.5
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.6e-101 373.6 308 64.6
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 2.7e-101 372.9 308 64.0
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 2.7e-101 372.9 322 63.0
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 3.6e-101 372.5 290 67.2
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 4.7e-101 372.1 253 73.9
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.0e-100 370.9 253 73.1
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.3e-100 369.8 325 59.4
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.0e-100 369.4 253 73.5
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 5.1e-100 368.6 257 72.0
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 6.7e-100 368.2 252 72.6
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.8e-100 367.9 295 65.8
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.5e-99 367.1 305 64.6
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 3.3e-99 365.9 319 60.5
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 3.3e-99 365.9 252 71.4
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 3.3e-99 365.9 253 73.1
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 5.7e-99 365.2 300 63.7
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 5.7e-99 365.2 252 72.6
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 7.4e-99 364.8 256 71.9
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 7.4e-99 364.8 318 61.0
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 9.7e-99 364.4 253 71.9
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 9.7e-99 364.4 256 71.5
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 9.7e-99 364.4 347 59.1
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 1.3e-98 364.0 332 59.3
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.7e-98 363.6 269 68.4
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 2.2e-98 363.2 253 69.6
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.2e-98 363.2 290 66.2
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 2.8e-98 362.8 252 71.4
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 6.3e-98 361.7 255 69.8
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 6.3e-98 361.7 317 61.2
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 8.2e-98 361.3 273 67.8
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.8e-97 360.1 258 71.3
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 2.4e-97 359.8 254 70.5
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 4.1e-97 359.0 344 58.7
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 4.1e-97 359.0 341 57.8
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 5.3e-97 358.6 251 72.5
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 9.1e-97 357.8 289 64.4
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.2e-96 357.5 259 69.9
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.6e-96 357.1 321 58.9
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 2.6e-96 356.3 256 69.9
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.5e-96 355.9 259 69.1
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.5e-96 355.9 259 69.1
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 3.5e-96 355.9 303 61.4
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 4.5e-96 355.5 251 70.9
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 7.7e-96 354.8 286 63.6
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 7.7e-96 354.8 259 69.5
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 7.7e-96 354.8 251 70.9
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 7.7e-96 354.8 302 62.6
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.0e-95 354.4 252 68.7
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 1.0e-95 354.4 303 61.1
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.3e-95 354.0 251 70.1
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 3.8e-95 352.4 321 59.8
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 5.0e-95 352.1 313 60.7
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 5.0e-95 352.1 290 64.5
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 8.5e-95 351.3 252 68.7
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 8.5e-95 351.3 255 69.4
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.9e-94 350.1 271 65.3
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 3.2e-94 349.4 345 56.5
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 4.2e-94 349.0 290 62.4
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 4.2e-94 349.0 304 59.9
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 4.2e-94 349.0 281 63.3
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 4.2e-94 349.0 310 62.6
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 4.2e-94 349.0 249 69.1
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 8.0e-93 344.7 250 68.0
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 8.0e-93 344.7 252 67.1
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.0e-92 344.4 257 66.1
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.8e-92 343.6 330 56.7
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 2.3e-92 343.2 321 57.3
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.3e-92 343.2 256 66.4
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.3e-92 343.2 256 66.4
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 3.0e-92 342.8 256 66.0
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 3.0e-92 342.8 329 54.4
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 5.2e-92 342.0 274 62.8
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 6.7e-92 341.7 304 58.6
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 6.7e-92 341.7 242 69.0
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 8.8e-92 341.3 304 59.2
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.5e-91 340.5 281 61.9
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 7.5e-91 338.2 284 63.0
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.7e-90 337.0 251 66.9
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.2e-90 336.7 315 57.8
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 4.8e-90 335.5 346 56.4
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 4.8e-90 335.5 330 56.1
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 8.2e-90 334.7 255 65.9
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 1.1e-89 334.3 286 59.8
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 4.1e-89 332.4 302 57.6
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 2.7e-88 329.7 257 63.8
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 3.2e-86 322.8 324 54.6
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 4.4e-83 312.4 242 62.8
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.2e-82 310.1 242 62.0
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 3.7e-82 309.3 242 62.0
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 1.8e-81 307.0 252 60.3
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 2.4e-81 306.6 298 53.4
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 7.0e-81 305.1 279 59.5
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 6.1e-77 292.0 263 60.5
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 4.9e-74 282.3 239 61.1
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.1e-70 271.2 202 67.3
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 6.1e-69 265.4 273 48.4
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.0e-68 264.6 251 53.4
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.9e-66 256.5 275 48.7
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 3.7e-66 256.1 269 52.8
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 3.5e-56 223.0 241 47.3
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 4.6e-56 222.6 142 75.4
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.7e-55 220.7 243 50.6
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 5.0e-55 219.2 167 65.9
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.1e-53 213.8 166 66.3
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-45 188.0 199 52.8
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 4.4e-43 179.5 167 59.3
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 9.9e-43 178.3 278 40.6
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 9.9e-43 178.3 210 51.0
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 3.0e-39 166.8 150 56.7
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 1.5e-38 164.5 159 59.1
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.2e-34 150.6 102 71.6
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 2.4e-33 147.1 99 71.7
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 2.4e-33 147.1 106 69.8
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.1e-32 144.1 171 48.0
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.9e-31 139.8 125 58.4
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.6e-31 139.0 105 67.6
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 9.0e-28 128.6 125 53.6
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.5e-27 127.9 102 60.8
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 4.5e-27 126.3 111 57.7
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 5.8e-27 125.9 75 80.0
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 7.9e-24 115.5 72 76.4
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 1.0e-23 115.2 247 32.0
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.4e-20 104.0 86 60.5
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 7.6e-19 99.0 86 57.0
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 1.3e-18 98.2 265 30.2
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.6e-16 91.3 82 52.4
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 2.1e-16 90.9 56 78.6
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 2.7e-16 90.5 80 57.5
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 7.9e-16 89.0 50 82.0
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.5e-14 84.7 125 40.0
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.5e-14 84.7 56 69.6
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 5.6e-14 82.8 96 53.1
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.7e-13 80.1 128 38.3
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 8.1e-13 79.0 240 27.5
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.0e-10 72.0 92 42.4
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 4.2e-09 66.6 54 66.7
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 9.3e-09 65.5 114 36.0
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 1.2e-08 65.1 66 51.5
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 4.6e-08 63.2 39 66.7
Cc00_g03900 Coffea canephora HOM05D005205 ORTHO05D006155 4.3e-06 56.6 56 51.8
COL.COLO4_28032 Corchorus olitorius HOM05D001335 ORTHO05D001184 5.7e-06 56.2 46 63.0


User provided reference genes

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