Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005972 Vanilla planifolia HOM05D000091 ORTHO05D427542 1.1e-47 193.0 99 100.0
HPP92_005979 Vanilla planifolia HOM05D000091 ORTHO05D429287 1.1e-47 193.0 99 100.0
Medtr4g093850 Medicago truncatula HOM05D000091 ORTHO05D004126 4.4e-12 74.7 73 63.0
Phvul.006G203600 Phaseolus vulgaris HOM05D000091 ORTHO05D004126 1.7e-11 72.8 65 64.6
VMungo0540G2352 Vigna mungo HOM05D000091 ORTHO05D004126 1.7e-11 72.8 65 64.6
Peaxi162Scf00003g03341 Petunia axillaris HOM05D000091 ORTHO05D004126 2.2e-11 72.4 68 64.7
Psat7g100600 Pisum sativum HOM05D000091 ORTHO05D004126 3.7e-11 71.6 64 68.8
Aa31LG1G17570 Aethionema arabicum HOM05D000091 ORTHO05D004126 4.9e-11 71.2 76 56.6
Nitab4.5_0000313g0110 Nicotiana tabacum HOM05D000091 ORTHO05D004126 6.4e-11 70.9 68 63.2
Nitab4.5_0008998g0040 Nicotiana tabacum HOM05D000091 ORTHO05D004126 6.4e-11 70.9 68 63.2
Glyma.13G258700 Glycine max HOM05D000091 ORTHO05D004126 8.3e-11 70.5 71 59.2
Glyma.13G368300 Glycine max HOM05D000091 ORTHO05D004126 8.3e-11 70.5 71 59.2
Glyma.15G056500 Glycine max HOM05D000091 ORTHO05D004126 8.3e-11 70.5 65 61.5
Lalb_Chr15g0090351 Lupinus albus HOM05D000091 ORTHO05D004126 8.3e-11 70.5 65 63.1
RcHm_v2.0_Chr6g0271301 Rosa chinensis HOM05D000091 ORTHO05D004126 8.3e-11 70.5 73 57.5
vmacro01850 Vaccinium macrocarpon HOM05D000091 ORTHO05D004126 8.3e-11 70.5 68 63.2
Peaxi162Scf00299g00849 Petunia axillaris HOM05D000091 ORTHO05D004126 1.1e-10 70.1 68 61.8
CANSAT11G0467 Cannabis sativa HOM05D000091 ORTHO05D004126 1.4e-10 69.7 70 61.4
Ca_18371_v3 Cicer arietinum L. HOM05D000091 ORTHO05D004126 1.4e-10 69.7 65 64.6
TPR.G2840 Trifolium pratense HOM05D000091 ORTHO05D004126 1.4e-10 69.7 65 66.2
CAN.G1861.3 Capsicum annuum HOM05D000091 ORTHO05D004126 1.9e-10 69.3 76 56.6
Thhalv10003710m.g Eutrema salsugineum HOM05D000091 ORTHO05D004126 1.9e-10 69.3 75 57.3
Lalb_Chr20g0122871 Lupinus albus HOM05D000091 ORTHO05D004126 1.9e-10 69.3 73 57.5
Manes.10G102200 Manihot esculenta HOM05D000091 ORTHO05D004126 1.9e-10 69.3 64 62.5
Sp2g27390 Schrenkiella parvula HOM05D000091 ORTHO05D004126 1.9e-10 69.3 75 57.3
ATR0022G045 Amborella trichopoda HOM05D000091 ORTHO05D004126 2.4e-10 68.9 64 60.9
arahy.Tifrunner.gnm1.ann1.4T09L2 Arachis hypogaea HOM05D000091 ORTHO05D004126 2.4e-10 68.9 66 62.1
arahy.Tifrunner.gnm1.ann1.PKZ6FU Arachis hypogaea HOM05D000091 ORTHO05D004126 2.4e-10 68.9 66 62.1
COL.COLO4_32355 Corchorus olitorius HOM05D000091 ORTHO05D004126 2.4e-10 68.9 68 63.2
MELO3C024837.2 Cucumis melo HOM05D000091 ORTHO05D004126 2.4e-10 68.9 68 61.8
Manes.07G037100 Manihot esculenta HOM05D000091 ORTHO05D004126 2.4e-10 68.9 64 62.5
Sc14g0003430 Simmondsia chinensis HOM05D000091 ORTHO05D004126 2.4e-10 68.9 66 57.6
Ah.01g007500 Amaranthus hybridus HOM05D000091 ORTHO05D004126 3.2e-10 68.6 66 57.6
BcaC04g23322 Brassica carinata HOM05D000091 ORTHO05D004126 3.2e-10 68.6 71 59.2
C09p09740 Brassica napus HOM05D000091 ORTHO05D004126 3.2e-10 68.6 71 59.2
BolC9t53885H Brassica oleracea HOM05D000091 ORTHO05D004126 3.2e-10 68.6 71 59.2
Migut.B00566 Erythranthe guttata HOM05D000091 ORTHO05D004126 3.2e-10 68.6 68 61.8
PGR042G2747 Punica granatum HOM05D000091 ORTHO05D004126 3.2e-10 68.6 68 60.3
RhsimUnG0008300 Rhododendron simsii HOM05D000091 ORTHO05D004126 3.2e-10 68.6 68 61.8
RhsimUnG0106100 Rhododendron simsii HOM05D000091 ORTHO05D004126 3.2e-10 68.6 68 61.8
CAN.G523.30 Capsicum annuum HOM05D000091 ORTHO05D004126 4.1e-10 68.2 68 60.3
Duzib248G0007 Durio zibethinus HOM05D000091 ORTHO05D004126 4.1e-10 68.2 68 63.2
CSS0013813 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D004126 5.4e-10 67.8 69 58.0
Cc02_g21030 Coffea canephora HOM05D000091 ORTHO05D004126 5.4e-10 67.8 64 60.9
Lj4g0014549 Lotus japonicus HOM05D000091 ORTHO05D004126 5.4e-10 67.8 64 60.9
MD10G1053800 Malus domestica HOM05D000091 ORTHO05D004126 5.4e-10 67.8 73 54.8
PSO210G2717 Papaver somniferum HOM05D000091 ORTHO05D004126 5.4e-10 67.8 67 56.7
CSS0047297 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D004126 7.1e-10 67.4 69 58.0
CsaV3_4G009650 Cucumis sativus L. HOM05D000091 ORTHO05D004126 7.1e-10 67.4 68 61.8
Glyma.07G180900 Glycine max HOM05D000091 ORTHO05D004126 7.1e-10 67.4 63 61.9
Lalb_Chr18g0060461 Lupinus albus HOM05D000091 ORTHO05D004126 7.1e-10 67.4 66 63.6
Medtr2g009340 Medicago truncatula HOM05D000091 ORTHO05D004126 7.1e-10 67.4 67 61.2
BolC3t18455H Brassica oleracea HOM05D000091 ORTHO05D004126 9.2e-10 67.0 77 54.5
Nitab4.5_0002650g0080 Nicotiana tabacum HOM05D000091 ORTHO05D004126 9.2e-10 67.0 68 60.3
Phvul.002G211400 Phaseolus vulgaris HOM05D000091 ORTHO05D004126 9.2e-10 67.0 65 61.5
QL11p023808 Quercus lobata HOM05D000091 ORTHO05D004126 9.2e-10 67.0 76 53.9
SGA_v2.0_scaffold83G26349 Striga asiatica HOM05D000091 ORTHO05D004126 9.2e-10 67.0 67 56.7
VMungo0251G1806 Vigna mungo HOM05D000091 ORTHO05D004126 9.2e-10 67.0 64 59.4
arahy.Tifrunner.gnm1.ann1.ZKJP05 Arachis hypogaea HOM05D000091 ORTHO05D004126 1.2e-09 66.6 64 64.1
BcaB04g19967 Brassica carinata HOM05D000091 ORTHO05D004126 1.2e-09 66.6 77 53.2
CSS0012256 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D004126 1.2e-09 66.6 70 58.6
CSS0034940 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D004126 1.2e-09 66.6 70 58.6
Eucgr.G00960 Eucalyptus grandis HOM05D000091 ORTHO05D004126 1.2e-09 66.6 68 58.8
Hma1.2p1_1093F.1_g256080 Hydrangea macrophylla HOM05D000091 ORTHO05D004126 1.2e-09 66.6 76 56.6
Nitab4.5_0001264g0150 Nicotiana tabacum HOM05D000091 ORTHO05D004126 1.2e-09 66.6 68 60.3
PSO541G1389 Papaver somniferum HOM05D000091 ORTHO05D004126 1.2e-09 66.6 64 60.9
PSO675G8640 Papaver somniferum HOM05D000091 ORTHO05D004126 1.2e-09 66.6 64 60.9
PGSC0003DMG400033569 Solanum tuberosum HOM05D000091 ORTHO05D004126 1.2e-09 66.6 68 58.8
AL8G41690 Arabidopsis lyrata HOM05D000091 ORTHO05D004126 1.6e-09 66.2 78 53.8
BcaC01g06906 Brassica carinata HOM05D000091 ORTHO05D004126 1.6e-09 66.2 77 54.5
C03p61960 Brassica napus HOM05D000091 ORTHO05D004126 1.6e-09 66.2 77 54.5
DCAR_021887 Daucus carota HOM05D000091 ORTHO05D004126 1.6e-09 66.2 72 58.3
FvH4_5g25720 Fragaria vesca HOM05D000091 ORTHO05D004126 1.6e-09 66.2 72 55.6
FAN08G3536 Fragaria x ananassa HOM05D000091 ORTHO05D004126 1.6e-09 66.2 72 55.6
FAN13G2241 Fragaria x ananassa HOM05D000091 ORTHO05D004126 1.6e-09 66.2 72 55.6
Gohir.A13G070500 Gossypium hirsutum HOM05D000091 ORTHO05D004126 1.6e-09 66.2 67 61.2
PSO170G4338 Papaver somniferum HOM05D000091 ORTHO05D004126 1.6e-09 66.2 67 56.7
Prupe.8G067500 Prunus persica HOM05D000091 ORTHO05D004126 1.6e-09 66.2 73 56.2
RcHm_v2.0_Chr7g0216061 Rosa chinensis HOM05D000091 ORTHO05D004126 1.6e-09 66.2 72 55.6
Solyc01g105680.4 Solanum lycopersicum HOM05D000091 ORTHO05D004126 1.6e-09 66.2 68 58.8
Sopen01g048130 Solanum pennellii HOM05D000091 ORTHO05D004126 1.6e-09 66.2 68 58.8
Actinidia04401 Actinidia chinensis HOM05D000091 ORTHO05D004126 2.1e-09 65.9 76 55.3
AT5G64330 Arabidopsis thaliana HOM05D000091 ORTHO05D004126 2.1e-09 65.9 79 53.2
A06p31000 Brassica napus HOM05D000091 ORTHO05D004126 2.1e-09 65.9 76 55.3
BraA06t26042Z Brassica rapa HOM05D000091 ORTHO05D004126 2.1e-09 65.9 76 55.3
Carub.0008s2512 Capsella rubella HOM05D000091 ORTHO05D004126 2.1e-09 65.9 78 55.1
Gohir.D02G199600 Gossypium hirsutum HOM05D000091 ORTHO05D004126 2.1e-09 65.9 66 59.1
Gorai.005G224200 Gossypium raimondii HOM05D000091 ORTHO05D004126 2.1e-09 65.9 66 59.1
Psat1g214600 Pisum sativum HOM05D000091 ORTHO05D004126 2.1e-09 65.9 64 60.9
PGSC0003DMG400002400 Solanum tuberosum HOM05D000091 ORTHO05D004126 2.1e-09 65.9 68 58.8
Thecc.02G132200 Theobroma cacao HOM05D000091 ORTHO05D004126 2.1e-09 65.9 66 62.1
TPR.G9484 Trifolium pratense HOM05D000091 ORTHO05D004126 2.1e-09 65.9 65 61.5
TWI23G0226 Tripterygium wilfordii HOM05D000091 ORTHO05D004126 2.1e-09 65.9 68 60.3
TWI59G0183 Tripterygium wilfordii HOM05D000091 ORTHO05D004126 2.1e-09 65.9 68 61.8
Actinidia00293 Actinidia chinensis HOM05D000091 ORTHO05D004126 2.7e-09 65.5 68 60.3
A09p08630 Brassica napus HOM05D000091 ORTHO05D004126 2.7e-09 65.5 78 51.3
BraA09t36512Z Brassica rapa HOM05D000091 ORTHO05D004126 2.7e-09 65.5 78 51.3
CiPaw.06G156700 Carya illinoinensis HOM05D000091 ORTHO05D004126 2.7e-09 65.5 68 58.8
Dinv15986 Davidia involucrata HOM05D000091 ORTHO05D004126 2.7e-09 65.5 64 59.4
Potri.017G048200 Populus trichocarpa HOM05D000091 ORTHO05D004126 2.7e-09 65.5 67 62.7
Solyc10g047530.2 Solanum lycopersicum HOM05D000091 ORTHO05D004126 2.7e-09 65.5 68 58.8
Sopen10g017810 Solanum pennellii HOM05D000091 ORTHO05D004126 2.7e-09 65.5 68 58.8
arahy.Tifrunner.gnm1.ann1.5Y2C3U Arachis hypogaea HOM05D000091 ORTHO05D004126 3.5e-09 65.1 64 62.5
Ca_00155_v3 Cicer arietinum L. HOM05D000091 ORTHO05D004126 3.5e-09 65.1 64 60.9
HanXRQChr11g0333371 Helianthus annuus HOM05D000091 ORTHO05D004126 3.5e-09 65.1 63 57.1
MD05G1047100 Malus domestica HOM05D000091 ORTHO05D004126 3.5e-09 65.1 78 53.8
Potri.007G112600 Populus trichocarpa HOM05D000091 ORTHO05D004126 3.5e-09 65.1 68 60.3
SalBow6G1523 Salvia bowleyana HOM05D000091 ORTHO05D004126 3.5e-09 65.1 68 55.9
THA.LOC104799835 Tarenaya hassleriana HOM05D000091 ORTHO05D004126 3.5e-09 65.1 67 56.7
MSTRG.27811 Avicennia marina HOM05D000091 ORTHO05D004126 4.6e-09 64.7 66 60.6
CARHR278260 Cardamine hirsuta HOM05D000091 ORTHO05D004126 4.6e-09 64.7 80 53.8
CsaV3_7G007040 Cucumis sativus L. HOM05D000091 ORTHO05D004126 4.6e-09 64.7 70 54.3
DCAR_029190 Daucus carota HOM05D000091 ORTHO05D004126 4.6e-09 64.7 64 59.4
Gohir.D13G051200 Gossypium hirsutum HOM05D000091 ORTHO05D004126 4.6e-09 64.7 70 58.6
Gorai.013G057300 Gossypium raimondii HOM05D000091 ORTHO05D004126 4.6e-09 64.7 70 58.6
MBI06_g42715_MAGBIO Magnolia biondii HOM05D000091 ORTHO05D004126 4.6e-09 64.7 68 57.4
FAN04G2272 Fragaria x ananassa HOM05D000091 ORTHO05D004126 7.8e-09 63.9 72 54.2
FAN18G3787 Fragaria x ananassa HOM05D000091 ORTHO05D004126 7.8e-09 63.9 72 54.2
Lj5A232T95 Lonicera japonica HOM05D000091 ORTHO05D004126 7.8e-09 63.9 67 61.2
Sabra07G0092000 Salix brachista HOM05D000091 ORTHO05D004126 7.8e-09 63.9 68 60.3
TAR381G1115 Trochodendron aralioides HOM05D000091 ORTHO05D004126 7.8e-09 63.9 67 56.7
Atru.chr6.1227 Acer truncatum HOM05D000091 ORTHO05D004126 1.0e-08 63.5 68 58.8
MSTRG.16608 Avicennia marina HOM05D000091 ORTHO05D004126 1.0e-08 63.5 69 58.0
Cpa.g.sc1175.2 Carica papaya HOM05D000091 ORTHO05D004126 1.0e-08 63.5 68 55.9
Duzib132G1054 Durio zibethinus HOM05D000091 ORTHO05D004126 1.0e-08 63.5 68 60.3
ECA236G2139 Erigeron canadensis HOM05D000091 ORTHO05D004126 1.0e-08 63.5 74 50.0
Glyma.08G069800 Glycine max HOM05D000091 ORTHO05D004126 1.0e-08 63.5 64 59.4
Gohir.A03G175800 Gossypium hirsutum HOM05D000091 ORTHO05D004126 1.0e-08 63.5 66 57.6
Lj6g0005625 Lotus japonicus HOM05D000091 ORTHO05D004126 1.0e-08 63.5 65 60.0
GSVIVG01012508001 Vitis vinifera HOM05D000091 ORTHO05D004126 1.0e-08 63.5 68 60.3
CiPaw.05G031300 Carya illinoinensis HOM05D000091 ORTHO05D004126 1.3e-08 63.2 68 57.4
ClCG09G015920 Citrullus lanatus HOM05D000091 ORTHO05D004126 1.3e-08 63.2 71 56.3
Lsat_1_v5_gn_7_83740 Lactuca sativa HOM05D000091 ORTHO05D004126 1.3e-08 63.2 66 56.1
Nn5g29942 Nelumbo nucifera HOM05D000091 ORTHO05D004126 1.3e-08 63.2 67 56.7
Sabra17G0032700 Salix brachista HOM05D000091 ORTHO05D004126 1.3e-08 63.2 68 60.3
Sabra17G0034000 Salix brachista HOM05D000091 ORTHO05D004126 1.3e-08 63.2 68 60.3
Sed0016365 Sechium edule HOM05D000091 ORTHO05D004126 1.3e-08 63.2 65 56.9
Zm00001eb244600 Zea mays HOM05D000091 ORTHO05D004126 1.3e-08 63.2 77 53.2
TAR625G0011 Trochodendron aralioides HOM05D000091 ORTHO05D004126 1.7e-08 62.8 65 55.4
Ah.01g024040 Amaranthus hybridus HOM05D000091 ORTHO05D004126 2.3e-08 62.4 66 53.0
Aqoxy6G01465 Aquilegia oxysepala HOM05D000091 ORTHO05D004126 2.3e-08 62.4 67 53.7
ClCG10G009530 Citrullus lanatus HOM05D000091 ORTHO05D004126 2.3e-08 62.4 68 58.8
MELO3C018590.2 Cucumis melo HOM05D000091 ORTHO05D004126 2.3e-08 62.4 70 55.7
Migut.N01090 Erythranthe guttata HOM05D000091 ORTHO05D004126 2.3e-08 62.4 74 52.7
Oeu022085.1 Olea europaea HOM05D000091 ORTHO05D004126 2.3e-08 62.4 68 58.8
SalBow8G5561 Salvia bowleyana HOM05D000091 ORTHO05D004126 2.3e-08 62.4 70 57.1
SEGI_19452 Sequoiadendron giganteum HOM05D000091 ORTHO05D004126 3.0e-08 62.0 64 56.2
Hund06155 Selenicereus undatus HOM05D000091 ORTHO05D004126 3.9e-08 61.6 69 55.1
Sed0026147 Sechium edule HOM05D000091 ORTHO05D004126 5.1e-08 61.2 75 50.7
Haze_10555 Corylus avellana HOM05D000091 ORTHO05D004126 6.6e-08 60.8 68 57.4
Lj9A348T68 Lonicera japonica HOM05D000091 ORTHO05D004126 8.6e-08 60.5 71 52.1
TAR628G1646 Trochodendron aralioides HOM05D000091 ORTHO05D004126 8.6e-08 60.5 66 57.6
EL10Ac9g22087 Beta vulgaris HOM05D000091 ORTHO05D004126 1.1e-07 60.1 65 52.3
AUR62027122 Chenopodium quinoa HOM05D000091 ORTHO05D004126 1.1e-07 60.1 66 54.5
Ciclev10004479m.g Citrus clementina HOM05D000091 ORTHO05D004126 1.1e-07 60.1 68 52.9
Cfa005694 Carpinus fangiana HOM05D000091 ORTHO05D004126 1.5e-07 59.7 66 54.5
CDE10G0964 Ceratophyllum demersum HOM05D000091 ORTHO05D004126 1.5e-07 59.7 72 51.4
AUR62012898 Chenopodium quinoa HOM05D000091 ORTHO05D004126 1.5e-07 59.7 66 54.5
Nn1g05501 Nelumbo nucifera HOM05D000091 ORTHO05D004126 1.5e-07 59.7 67 55.2
CDE10G0408 Ceratophyllum demersum HOM05D000091 ORTHO05D004126 7.3e-07 57.4 72 50.0
Os02g0568200 Oryza sativa ssp. japonica HOM05D000091 ORTHO05D004126 2.1e-06 55.8 87 48.3
arahy.Tifrunner.gnm1.ann1.XK1BEG Arachis hypogaea HOM05D000091 ORTHO05D004126 3.6e-06 55.1 59 61.0


User provided reference genes

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