Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1255.7 637 100.0
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 637 88.2
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1127.9 637 87.3
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1127.5 634 87.9
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1126.7 637 87.1
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1126.7 637 87.1
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 637 87.1
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 635 87.1
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 634 87.5
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1124.0 637 87.3
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1124.0 637 87.3
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 637 86.3
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 637 86.8
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 637 87.3
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1121.7 636 86.8
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1120.9 637 87.0
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 637 86.8
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1119.0 637 86.3
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 637 87.0
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1117.4 637 86.3
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1117.1 631 87.3
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1115.9 634 86.8
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1115.5 636 86.2
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1113.6 637 86.3
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1112.8 636 86.2
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1112.8 637 86.3
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1112.4 637 86.2
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1112.4 635 86.5
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1111.7 637 86.2
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1111.7 637 86.2
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1111.7 637 86.2
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1111.3 636 85.8
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1109.7 635 86.3
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 631 87.0
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 633 86.4
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1109.0 637 85.4
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1108.6 633 86.3
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1108.6 637 85.9
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1108.6 633 85.8
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1108.6 634 86.4
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1108.6 633 86.6
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1108.2 637 85.9
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1106.3 637 85.7
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1106.3 636 85.8
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1105.5 631 86.2
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1105.1 636 85.4
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1105.1 637 85.9
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1105.1 637 86.5
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1104.7 633 85.9
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1104.7 633 86.1
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1103.6 636 86.0
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1102.8 637 85.4
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1102.0 637 85.4
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1101.7 647 85.0
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1100.1 637 84.8
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1100.1 637 85.7
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1098.6 634 85.2
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1097.8 637 85.2
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1097.4 637 84.5
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1097.4 637 85.1
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1097.0 636 85.8
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1097.0 637 84.8
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1096.3 631 85.7
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1096.3 633 84.8
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1095.5 637 84.8
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1095.5 637 84.8
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1095.1 628 86.5
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1094.7 637 84.8
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1094.3 637 84.5
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1093.6 630 85.1
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1093.6 633 84.5
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1093.2 633 84.5
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1092.8 637 84.6
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1092.8 637 84.6
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1092.8 637 84.6
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1092.8 637 84.5
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1092.0 637 84.5
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1092.0 635 84.3
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1090.9 637 84.6
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1090.5 637 84.1
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1090.1 636 83.6
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1090.1 637 84.5
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1088.6 637 84.5
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1087.8 664 81.6
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1087.0 631 84.5
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1086.2 637 84.0
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1084.7 637 84.9
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1083.6 630 84.0
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1083.2 637 83.5
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1080.5 630 83.7
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1079.3 630 84.9
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1077.4 632 85.1
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1075.1 630 84.6
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.7e-311 1072.0 630 84.3
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 1.7e-311 1072.0 636 83.6
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 1.1e-308 1062.8 637 82.6
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 1.1e-308 1062.8 633 83.1
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.0e-303 1046.2 647 81.5
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 1.1e-300 1036.2 628 81.4
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 3.1e-300 1034.6 628 80.7
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 9.3e-297 1023.1 582 85.9
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 6.0e-296 1020.4 628 79.6
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.1e-294 1016.1 631 79.1
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 2.5e-289 998.4 631 77.7
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 3.2e-273 944.9 541 87.1
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 2.2e-269 932.2 649 73.7
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.4e-268 929.5 534 85.4
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 2.4e-268 928.7 534 85.2
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 6.1e-264 914.1 638 71.2
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 8.5e-258 893.6 635 72.6
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 8.5e-258 893.6 644 71.1
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 8.3e-253 877.1 499 87.0
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.1e-236 823.5 634 69.2
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 5.4e-236 821.2 503 82.7
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 7.0e-236 820.8 636 66.4
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 6.8e-231 804.3 636 68.4
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.2e-230 803.5 512 78.9
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 7.5e-230 800.8 503 79.5
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 3.1e-223 778.9 638 62.4
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 7.6e-198 694.5 444 77.7
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.7e-189 666.8 533 66.8
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 3.5e-179 632.5 633 53.2
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.5e-174 615.5 445 70.8
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.0e-170 604.4 354 83.3
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.5e-164 582.0 411 74.0
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 3.0e-154 549.7 315 87.3
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 7.4e-145 518.5 296 87.2
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 2.4e-135 486.9 278 88.1
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.7e-112 411.0 510 43.7
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 7.8e-94 349.0 201 85.6
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 5.4e-87 326.2 240 69.2
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 2.5e-84 317.4 184 85.9
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.5e-81 308.1 231 66.2
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 3.3e-76 290.4 163 85.9
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 6.9e-74 282.7 163 84.7
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 7.1e-71 272.7 637 32.8
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.0e-56 225.7 273 48.0
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 2.5e-47 194.5 230 52.2
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 5.1e-45 186.8 104 87.5
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.4e-39 168.7 104 78.8
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 9.4e-39 166.0 99 82.8
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.6e-38 165.2 104 76.9
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 3.6e-38 164.1 86 87.2
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 5.1e-37 160.2 87 93.1
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 8.8e-37 159.5 160 58.8
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 1.6e-33 148.7 91 82.4
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 2.0e-33 148.3 125 63.2
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 2.6e-33 147.9 91 81.3
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.6e-30 138.7 74 83.8
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 4.4e-20 104.0 53 96.2
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 2.4e-18 98.2 115 48.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 5.9e-17 93.6 51 84.3
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 1.3e-16 92.4 63 66.7
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 2.2e-16 91.7 96 52.1
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.9e-15 88.6 70 61.4
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 9.5e-15 86.3 49 81.6
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 5.2e-13 80.5 56 66.1
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 1.1e-07 62.8 43 67.4


User provided reference genes

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