Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 1.2e-277 959.1 465 100.0
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.2e-91 341.3 392 46.9
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 2.0e-91 340.5 391 46.5
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.9e-89 334.0 384 50.3
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 9.4e-89 331.6 480 42.9
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 1.6e-88 330.9 401 47.4
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 1.6e-88 330.9 413 46.0
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 1.6e-88 330.9 402 47.0
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 4.7e-88 329.3 395 45.8
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 3.0e-87 326.6 407 45.9
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 6.8e-87 325.5 407 47.7
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 6.8e-87 325.5 425 46.4
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 6.8e-87 325.5 409 44.7
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 1.5e-86 324.3 463 41.9
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.7e-86 322.4 461 43.4
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 1.3e-85 321.2 405 44.4
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 2.2e-85 320.5 434 44.0
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.8e-85 320.1 385 47.5
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 4.8e-85 319.3 392 46.2
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 4.8e-85 319.3 389 45.5
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 1.1e-84 318.2 405 44.2
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 2.4e-84 317.0 418 43.3
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 3.1e-84 316.6 449 43.2
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 5.4e-84 315.8 417 43.6
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 7.0e-84 315.5 396 43.9
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 1.2e-83 314.7 406 43.6
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 1.2e-83 314.7 404 46.0
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 1.6e-83 314.3 412 45.4
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 2.0e-83 313.9 396 46.7
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 3.5e-83 313.2 440 41.6
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 4.5e-83 312.8 412 45.1
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 5.9e-83 312.4 402 45.3
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 7.7e-83 312.0 452 41.8
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 1.0e-82 311.6 496 39.7
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.7e-82 310.8 395 45.3
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 2.2e-82 310.5 408 44.1
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 2.2e-82 310.5 401 42.9
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 2.9e-82 310.1 394 45.2
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.9e-82 310.1 407 45.0
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.9e-82 310.1 407 45.0
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 2.9e-82 310.1 412 45.1
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.8e-82 309.7 395 45.3
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 3.8e-82 309.7 402 45.0
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 3.8e-82 309.7 400 46.8
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 5.0e-82 309.3 408 44.9
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 6.5e-82 308.9 397 43.8
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 6.5e-82 308.9 397 43.8
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 8.5e-82 308.5 419 43.9
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 1.5e-81 307.8 394 44.9
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 1.5e-81 307.8 440 42.5
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.9e-81 307.4 432 39.8
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.9e-81 307.4 409 45.2
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 3.2e-81 306.6 413 43.6
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 4.2e-81 306.2 403 44.4
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 5.5e-81 305.8 421 42.8
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 7.2e-81 305.4 416 45.2
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.6e-80 304.3 421 45.6
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 1.6e-80 304.3 397 45.3
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 1.6e-80 304.3 398 44.5
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 2.7e-80 303.5 389 45.2
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 2.7e-80 303.5 434 42.2
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 4.7e-80 302.8 401 43.4
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 4.7e-80 302.8 465 39.6
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 6.1e-80 302.4 400 44.0
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.4e-79 301.2 397 44.1
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.4e-79 301.2 397 44.1
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.4e-79 301.2 427 43.6
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 1.4e-79 301.2 426 42.7
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 2.3e-79 300.4 405 44.7
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 3.0e-79 300.1 413 43.6
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 3.0e-79 300.1 423 44.2
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 6.8e-79 298.9 369 47.2
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 8.8e-79 298.5 455 40.0
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.5e-78 297.7 421 43.5
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.5e-78 297.7 332 50.3
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 2.0e-78 297.4 299 51.8
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.0e-78 297.4 280 53.6
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 3.4e-78 296.6 473 40.8
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 4.4e-78 296.2 452 39.8
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 4.4e-78 296.2 295 52.9
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 7.5e-78 295.4 357 47.9
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 1.3e-77 294.7 393 43.0
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.3e-77 294.7 521 37.6
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 2.8e-77 293.5 275 52.7
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 3.7e-77 293.1 299 50.8
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 1.1e-76 291.6 389 41.9
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 1.4e-76 291.2 432 40.5
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 1.8e-76 290.8 541 37.2
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 9.2e-76 288.5 383 44.1
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 2.7e-75 287.0 416 43.3
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 4.5e-75 286.2 383 43.1
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.3e-74 283.9 389 43.4
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 2.9e-74 283.5 427 40.0
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 5.0e-74 282.7 442 41.6
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 6.6e-74 282.3 430 38.6
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 8.6e-74 282.0 299 50.2
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 3.6e-72 276.6 280 50.7
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 4.7e-72 276.2 420 40.0
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 3.0e-71 273.5 405 40.5
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 6.8e-71 272.3 235 56.6
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 8.9e-71 271.9 371 42.6
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 4.4e-70 269.6 421 39.7
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 7.5e-70 268.9 275 52.4
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 7.5e-70 268.9 235 56.2
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 7.5e-70 268.9 235 56.2
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 7.5e-70 268.9 275 52.0
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 2.2e-69 267.3 311 46.9
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 5.4e-68 262.7 518 35.7
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 4.6e-67 259.6 426 41.8
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 7.8e-67 258.8 401 41.9
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 1.0e-66 258.5 350 42.0
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 2.1e-64 250.8 413 38.7
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 7.5e-62 242.3 425 36.7
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 8.6e-58 228.8 282 45.4
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 1.4e-55 221.5 256 47.7
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.2e-48 196.1 277 42.6
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 8.1e-48 195.7 292 38.4
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 2.3e-47 194.1 283 40.3
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 6.8e-47 192.6 227 48.0
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.5e-46 191.4 288 39.2
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 1.5e-46 191.4 321 37.1
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 2.0e-46 191.0 291 37.8
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 5.1e-42 176.4 268 39.2
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 3.3e-41 173.7 240 41.2
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 5.2e-39 166.4 272 37.5
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 6.9e-39 166.0 330 38.2
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 2.9e-37 160.6 167 50.3
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 4.9e-37 159.8 133 60.9
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 1.4e-36 158.3 274 39.8
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 2.4e-36 157.5 189 45.5
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 4.3e-33 146.7 133 54.1
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 4.8e-32 143.3 185 43.2
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.2e-32 142.9 126 57.9
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 4.6e-27 126.7 71 74.6
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.3e-26 124.4 186 39.8
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 6.7e-26 122.9 88 60.2
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 6.7e-26 122.9 186 39.8
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.6e-25 119.0 105 58.1
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 2.8e-24 117.5 101 59.4
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 5.3e-23 113.2 95 57.9
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 5.8e-22 109.8 169 39.1
MCO07G333 Micromonas commoda HOM05D004413 ORTHO05D005199 5.5e-20 103.2 292 30.5
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 1.3e-18 98.6 75 61.3
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 1.3e-18 98.6 75 57.3
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 1.9e-17 94.7 188 37.2
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.4e-13 79.3 59 57.6
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.2e-11 75.5 222 30.6
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.6e-11 75.1 63 50.8
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 1.3e-10 72.0 92 42.4
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 1.1e-09 68.9 51 58.8
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 7.4e-09 66.2 66 45.5
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 8.2e-08 62.8 113 36.3
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.1e-07 62.4 52 46.2
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.4e-07 62.0 167 32.9
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 5.3e-07 60.1 62 43.5
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.0e-06 58.2 63 46.0
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 2.6e-06 57.8 76 46.1
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.6e-06 56.2 53 50.9


User provided reference genes

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