Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 0.0e+00 2299.6 1167 100.0
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1098.6 1321 49.5
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1086.2 1320 48.6
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1077.0 1309 48.6
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 6.7e-309 1064.3 1300 48.5
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 1.1e-308 1063.5 1320 48.0
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 2.5e-308 1062.4 1300 48.4
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 6.2e-307 1057.7 1318 48.0
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 1.2e-305 1053.5 1302 47.8
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 1.5e-305 1053.1 1343 47.6
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 7.6e-305 1050.8 1316 47.1
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 9.7e-300 1033.9 1313 47.0
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 1.6e-299 1033.1 1283 48.0
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 2.2e-299 1032.7 1322 46.8
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 1.9e-295 1019.6 1292 46.9
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 1.6e-294 1016.5 1308 47.6
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.8e-290 1003.0 1300 47.0
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 2.4e-290 1002.7 1312 45.3
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 1.3e-288 996.9 1291 46.2
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 3.0e-285 985.7 1303 46.0
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 2.8e-283 979.2 1259 47.5
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 5.0e-280 968.4 1314 45.1
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 2.5e-279 966.1 1449 43.3
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 3.2e-279 965.7 1294 43.7
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 2.8e-275 952.6 1357 44.0
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 2.4e-274 949.5 1283 44.5
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 3.1e-274 949.1 1398 43.9
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 1.0e-272 944.1 1330 44.3
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 2.2e-272 943.0 1285 44.4
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 6.5e-272 941.4 1294 43.4
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.4e-269 933.7 1288 44.6
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 2.3e-269 932.9 1339 44.7
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 4.0e-269 932.2 1301 43.6
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 5.7e-268 928.3 1288 43.3
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 7.5e-268 927.9 1324 43.7
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 9.8e-268 927.5 1335 44.3
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 2.2e-267 926.4 1454 42.4
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 4.8e-267 925.2 1291 43.3
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 1.8e-266 923.3 1318 44.3
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 2.0e-265 919.8 1274 43.6
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 2.7e-265 919.5 1311 43.9
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 2.9e-264 916.0 1296 43.1
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 3.8e-264 915.6 1285 43.4
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 4.2e-263 912.1 1283 43.5
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 1.2e-262 910.6 1217 45.9
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 1.6e-262 910.2 1305 43.1
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 2.1e-262 909.8 1308 43.5
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 2.1e-262 909.8 1334 43.3
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 3.0e-261 906.0 1241 45.7
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 4.0e-261 905.6 1312 44.1
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 7.5e-260 901.4 1314 42.7
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 8.3e-259 897.9 1313 42.6
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 8.3e-259 897.9 1356 41.5
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 1.1e-258 897.5 1286 43.2
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 3.1e-258 896.0 1332 42.6
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.0e-257 893.3 1286 44.2
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 3.5e-257 892.5 1309 43.9
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 3.3e-255 885.9 1279 42.6
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 5.6e-255 885.2 1350 41.6
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 2.1e-254 883.2 1103 48.7
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 6.1e-254 881.7 1322 41.3
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 2.6e-252 876.3 1297 41.8
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 9.8e-252 874.4 1299 41.9
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 1.7e-251 873.6 1294 41.9
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 2.2e-251 873.2 1351 41.2
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 2.9e-251 872.8 1297 41.7
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 2.9e-251 872.8 1297 41.7
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 2.9e-251 872.8 1297 41.7
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 3.7e-251 872.5 1353 41.0
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 4.9e-251 872.1 1294 41.1
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 3.2e-250 869.4 1287 42.2
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 1.2e-249 867.5 1303 42.4
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 4.6e-249 865.5 1391 40.5
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 7.8e-249 864.8 1293 42.2
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 1.0e-248 864.4 1276 42.0
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 3.9e-248 862.4 1287 40.8
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 6.6e-248 861.7 1374 41.6
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 8.6e-248 861.3 1274 41.6
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 1.5e-247 860.5 1365 41.2
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 2.3e-245 853.2 1250 42.1
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 5.2e-245 852.0 1289 42.7
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 2.0e-244 850.1 1337 42.6
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 9.8e-244 847.8 1364 41.6
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 1.1e-242 844.3 1371 41.4
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 2.0e-241 840.1 1297 41.2
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 6.0e-241 838.6 1060 47.4
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 2.3e-240 836.6 1267 42.1
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 1.1e-237 827.8 1298 40.6
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 1.8e-237 827.0 1285 42.8
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 9.2e-234 814.7 1319 39.7
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 7.6e-228 795.0 1348 40.4
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 3.9e-216 756.1 1233 41.3
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 3.5e-209 733.0 1188 39.9
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.7e-203 714.1 928 46.8
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 1.1e-197 694.9 1215 39.7
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 9.3e-186 655.2 849 46.6
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 3.7e-182 643.3 689 52.8
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 3.8e-179 633.3 724 50.8
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 2.5e-170 604.0 636 54.1
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.0e-156 557.8 480 60.4
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.6e-151 540.8 516 56.8
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 6.5e-147 526.2 358 71.5
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 6.8e-144 516.2 649 44.4
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 2.3e-139 501.1 358 67.0
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 4.7e-137 493.4 1270 30.9
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 1.4e-133 481.9 387 64.1
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 1.3e-126 458.8 870 37.7
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.5e-122 444.5 714 40.5
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.6e-119 434.5 396 54.0
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 1.2e-116 425.6 1202 29.0
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 3.6e-105 387.5 1112 29.0
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 1.5e-103 382.1 1022 29.5
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 2.7e-100 371.3 762 36.2
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 1.5e-98 365.5 1131 29.1
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 9.0e-96 356.3 868 34.4
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.3e-94 352.4 347 50.7
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 3.2e-93 347.8 567 39.5
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 4.2e-85 320.9 558 36.7
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.9e-83 314.3 305 50.5
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 8.2e-81 306.6 411 46.5
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.8e-67 262.3 201 66.7
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.0e-59 235.0 442 34.8
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 6.5e-54 217.2 336 41.7
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 2.4e-48 198.7 351 39.3
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.6e-47 196.1 121 77.7
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.5e-47 194.9 229 44.1
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 2.2e-46 192.2 246 42.7
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.2e-34 153.3 252 39.3
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.7e-28 131.3 476 26.5
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 6.8e-27 127.5 349 29.2
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 8.3e-25 120.6 412 25.5
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 5.9e-23 114.4 195 36.9
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 6.6e-22 110.9 167 37.7
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 5.6e-21 107.8 188 37.8
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.6e-20 106.3 141 44.0
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.0e-19 103.6 96 52.1
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 3.0e-19 102.1 573 23.4
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 3.0e-19 102.1 214 34.6
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 1.3e-14 86.7 187 30.5
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 1.9e-08 66.2 178 31.5
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.2e-07 63.5 68 51.5
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 3.5e-07 62.0 68 47.1
MBI19_g06116_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D036548 8.6e-06 57.4 34 76.5


User provided reference genes

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