Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.0e-169 599.0 299 100.0
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.1e-77 292.7 148 99.3
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 1.0e-75 287.7 232 62.9
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.8e-72 276.9 232 59.5
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.7e-70 269.2 253 55.3
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 3.8e-67 259.2 238 57.1
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 3.2e-66 256.1 235 58.3
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.1e-65 253.4 231 60.2
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 4.7e-65 252.3 232 57.8
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.8e-64 250.4 232 56.0
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 5.2e-64 248.8 232 54.7
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 6.7e-64 248.4 233 56.7
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 8.8e-64 248.1 230 56.5
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.0e-63 246.9 237 53.6
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.3e-63 246.1 206 67.5
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.3e-62 244.2 231 57.1
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.7e-62 243.8 233 55.8
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 3.1e-61 239.6 231 56.3
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 5.3e-61 238.8 230 55.2
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 7.0e-61 238.4 231 55.4
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 9.1e-61 238.0 232 55.2
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 9.1e-61 238.0 232 54.3
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 9.1e-61 238.0 231 54.5
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.2e-60 237.7 265 49.4
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.6e-60 237.3 232 54.3
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.9e-60 235.3 232 53.4
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.7e-59 233.8 232 53.0
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.7e-59 233.8 232 53.0
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.2e-58 229.6 230 51.7
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.2e-57 227.6 230 51.3
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 2.1e-57 226.9 234 50.9
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 6.1e-57 225.3 230 51.7
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 6.1e-57 225.3 259 49.4
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 6.1e-57 225.3 235 49.4
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.0e-56 224.6 230 51.7
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 6.8e-56 221.9 230 49.1
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.0e-55 220.3 182 61.5
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.6e-55 219.9 231 55.0
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 3.4e-55 219.5 230 49.1
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 4.4e-55 219.2 230 49.1
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 4.4e-55 219.2 236 49.2
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 5.7e-55 218.8 235 48.9
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 5.7e-55 218.8 231 48.5
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 9.8e-55 218.0 230 49.6
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 1.3e-54 217.6 233 50.6
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.7e-54 217.2 231 50.6
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 2.2e-54 216.9 207 55.6
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 3.7e-54 216.1 235 51.5
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.8e-54 215.7 240 48.8
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 8.3e-54 214.9 231 47.6
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.1e-53 214.5 238 47.9
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.4e-53 214.2 232 53.9
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.8e-53 213.8 235 48.5
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.4e-53 213.4 230 49.1
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.1e-53 213.0 238 47.5
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 3.1e-53 213.0 235 51.1
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 3.1e-53 213.0 230 45.7
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 4.1e-53 212.6 231 46.8
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 7.0e-53 211.8 234 47.0
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 9.1e-53 211.5 230 49.1
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 9.1e-53 211.5 230 47.4
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.0e-52 210.3 238 47.1
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 3.5e-52 209.5 239 51.0
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 4.5e-52 209.1 235 47.7
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 7.7e-52 208.4 231 49.8
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.3e-51 207.6 243 48.6
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 2.3e-51 206.8 230 47.8
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 5.0e-51 205.7 231 48.5
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 6.6e-51 205.3 248 47.2
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.1e-50 204.5 233 48.1
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 1.1e-50 204.5 230 47.0
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.1e-50 204.5 232 49.6
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 3.3e-50 203.0 231 46.3
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 7.2e-50 201.8 235 46.0
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 2.8e-49 199.9 234 45.7
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 6.1e-49 198.7 220 49.5
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 8.0e-49 198.4 231 45.9
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.0e-48 198.0 229 45.4
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.0e-48 198.0 229 45.4
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.4e-48 197.6 242 45.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 4.0e-48 196.1 217 50.2
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 5.2e-48 195.7 228 47.8
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 5.2e-48 195.7 228 47.8
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 5.2e-48 195.7 258 43.0
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.5e-47 194.1 216 48.6
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 2.6e-47 193.4 235 47.2
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-45 187.6 188 53.2
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.8e-45 187.2 231 41.6
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.4e-45 186.8 231 41.6
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.4e-45 186.8 234 44.9
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 5.9e-44 182.2 231 42.4
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.3e-43 181.0 231 41.1
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.7e-43 180.6 188 52.7
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 2.3e-43 180.3 183 52.5
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.3e-43 180.3 237 43.5
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 6.6e-43 178.7 230 46.1
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.5e-42 177.6 231 45.9
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.9e-42 177.2 183 49.2
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 4.3e-42 176.0 228 45.6
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 5.6e-42 175.6 183 48.6
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 7.3e-42 175.3 251 38.6
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 7.3e-42 175.3 251 38.6
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 9.5e-42 174.9 245 39.2
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 1.2e-41 174.5 252 36.5
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.6e-41 174.1 231 39.4
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 4.7e-41 172.6 246 38.2
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 6.1e-41 172.2 230 44.8
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.0e-40 171.4 229 40.6
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.3e-40 170.2 233 45.5
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 3.1e-40 169.9 184 52.2
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.1e-40 169.9 295 39.0
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 8.9e-40 168.3 231 39.8
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 2.0e-39 167.2 250 37.6
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 4.4e-39 166.0 250 37.2
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 4.4e-39 166.0 250 37.2
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 4.4e-39 166.0 265 43.0
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 2.2e-38 163.7 229 42.8
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.9e-37 160.6 229 40.6
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.4e-37 160.2 229 41.0
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 6.0e-36 155.6 234 37.2
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 3.0e-35 153.3 152 53.9
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.5e-34 148.3 230 37.4
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.2e-33 145.6 165 51.5
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 6.2e-33 145.6 182 41.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 6.2e-33 145.6 230 41.7
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 6.8e-32 142.1 153 50.3
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.0e-31 140.6 119 60.5
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.6e-31 140.2 226 38.1
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.1e-29 134.8 234 37.2
HPP92_005678 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.4e-29 134.4 67 94.0
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 7.8e-28 128.6 120 50.8
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.5e-26 123.6 178 43.3
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 4.4e-23 112.8 119 50.4
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 5.8e-23 112.5 119 49.6
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 7.5e-23 112.1 115 48.7
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 2.9e-22 110.2 96 53.1
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.1e-20 104.0 154 39.0
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 8.6e-19 98.6 170 36.5
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 9.5e-18 95.1 96 55.2
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 4.0e-16 89.7 95 44.2
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 1.1e-08 65.1 69 46.4
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.4e-08 64.7 161 26.7
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.2e-06 57.4 75 44.0


User provided reference genes

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