Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.3e-210 736.1 368 100.0
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.2e-156 555.4 351 79.2
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 6.2e-152 541.2 351 78.3
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 4.4e-150 535.0 351 77.5
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 7.6e-150 534.3 346 78.3
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.1e-148 530.4 354 74.9
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.1e-148 530.4 346 76.9
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 2.4e-148 529.3 349 75.6
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.2e-148 528.5 381 71.1
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 5.4e-148 528.1 346 77.2
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.2e-147 526.9 350 76.3
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.5e-145 520.0 349 74.2
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 5.6e-145 518.1 349 74.5
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 9.6e-145 517.3 346 75.4
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.3e-144 516.9 351 73.8
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 6.2e-144 514.6 352 73.9
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 8.1e-144 514.2 351 73.5
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.1e-143 513.8 349 73.4
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.4e-143 513.5 349 73.1
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 1.4e-143 513.5 349 73.1
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.4e-143 512.7 346 74.9
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.5e-142 510.0 351 72.6
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.3e-141 506.9 350 74.0
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.3e-141 506.9 349 72.5
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 3.8e-141 505.4 347 73.5
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 3.8e-141 505.4 347 71.8
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 8.4e-141 504.2 347 72.6
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.9e-140 503.1 348 72.7
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 3.2e-140 502.3 352 72.2
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 4.2e-140 501.9 349 71.1
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 7.1e-140 501.1 349 73.1
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 2.1e-139 499.6 349 71.3
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 7.9e-139 497.7 347 72.0
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 7.9e-139 497.7 349 72.5
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.0e-138 497.3 347 72.3
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.0e-138 497.3 349 71.1
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 2.3e-138 496.1 349 69.9
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.5e-137 493.4 350 71.4
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 2.5e-137 492.7 352 71.3
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 4.3e-137 491.9 348 72.4
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 9.6e-137 490.7 352 71.0
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.3e-136 490.3 351 70.9
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.3e-136 490.3 351 70.9
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.3e-136 490.3 351 70.9
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 1.3e-136 490.3 349 70.8
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 2.8e-136 489.2 347 69.2
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 3.7e-136 488.8 347 68.9
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 6.2e-136 488.0 354 71.2
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 6.2e-136 488.0 347 71.2
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 8.1e-136 487.6 352 70.5
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.4e-135 486.9 349 69.6
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 1.8e-135 486.5 352 71.6
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 4.0e-135 485.3 349 69.6
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 4.0e-135 485.3 352 70.7
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 6.9e-135 484.6 360 68.3
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 6.9e-135 484.6 349 69.3
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.5e-134 483.4 351 72.1
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 7.6e-134 481.1 349 69.3
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 1.3e-133 480.3 352 70.5
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 8.4e-133 477.6 347 72.9
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.9e-132 476.5 353 68.3
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 2.4e-132 476.1 352 69.6
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.2e-131 473.8 351 69.2
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 7.9e-131 471.1 349 68.8
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 3.0e-130 469.2 368 65.2
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.1e-129 467.2 369 65.9
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.9e-129 466.5 351 65.8
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.5e-129 466.1 378 66.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 4.3e-129 465.3 355 66.5
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 4.8e-128 461.8 363 66.4
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.4e-127 460.3 308 75.6
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 4.0e-127 458.8 347 66.6
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 6.9e-127 458.0 391 62.9
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 4.5e-126 455.3 319 72.4
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 7.6e-126 454.5 349 64.2
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 8.4e-125 451.1 317 70.0
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 2.5e-124 449.5 346 63.3
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 4.2e-124 448.7 351 66.7
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.2e-123 447.2 349 67.3
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.2e-123 447.2 346 69.9
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 4.6e-123 445.3 354 67.5
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.3e-122 443.7 319 69.6
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.8e-122 443.4 351 65.8
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 3.0e-122 442.6 353 65.2
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 9.7e-121 437.6 352 63.4
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 6.3e-120 434.9 350 64.9
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.8e-119 433.3 296 73.6
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.3e-117 427.2 348 62.6
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 1.7e-117 426.8 349 62.5
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 5.0e-117 425.2 348 62.6
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 5.0e-117 425.2 351 61.5
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 5.0e-117 425.2 350 61.7
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 6.5e-117 424.9 349 62.5
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.5e-117 424.5 349 63.0
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.2e-116 422.2 336 64.3
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 9.4e-116 421.0 352 58.8
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 2.7e-115 419.5 349 61.0
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 3.6e-115 419.1 350 61.4
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 4.6e-115 418.7 350 60.9
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.0e-114 417.5 351 61.0
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.4e-114 417.2 352 61.1
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.4e-114 417.2 349 62.5
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 3.0e-114 416.0 350 60.3
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.0e-114 416.0 349 61.0
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 5.1e-114 415.2 347 61.4
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 2.5e-113 412.9 358 60.3
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 4.3e-113 412.1 352 59.9
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 7.4e-113 411.4 358 60.1
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 9.7e-113 411.0 351 64.1
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.2e-112 409.8 352 59.9
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 5.3e-111 405.2 293 68.6
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.0e-109 401.0 300 67.7
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 6.5e-109 398.3 304 64.1
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 3.9e-106 389.0 358 58.9
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 6.3e-104 381.7 352 59.1
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.1e-103 379.4 387 57.6
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 7.0e-103 378.3 310 63.5
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 5.0e-101 372.1 277 68.6
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 3.3e-97 359.4 322 57.5
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 5.9e-86 322.0 289 59.2
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 9.1e-79 298.1 249 60.6
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.8e-77 292.7 148 99.3
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.2e-75 287.7 145 100.0
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 5.7e-73 278.9 156 89.1
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 9.8e-73 278.1 176 79.5
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.7e-72 277.3 155 88.4
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.4e-71 274.2 154 88.3
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.8e-71 273.9 156 87.8
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.4e-71 273.5 220 68.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 3.8e-69 266.2 354 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.1e-68 264.6 244 54.1
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 1.5e-68 264.2 319 47.3
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.5e-68 264.2 155 83.9
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.3e-64 251.1 195 63.6
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 1.3e-64 251.1 195 63.6
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.7e-64 249.6 195 64.1
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.1e-63 248.1 195 62.6
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 2.4e-63 246.9 195 62.1
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 4.1e-63 246.1 198 62.1
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.7e-61 240.7 140 85.0
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 2.5e-60 236.9 302 46.4
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 2.1e-59 233.8 194 59.3
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 6.2e-59 232.3 195 59.0
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.4e-58 231.1 132 87.9
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 2.6e-57 226.9 183 64.5
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 4.9e-56 222.6 182 64.8
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 6.0e-54 215.7 163 62.6
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 1.1e-52 211.5 124 84.7
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.5e-49 201.1 194 55.7
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 1.9e-47 194.1 131 79.4
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 7.6e-41 172.2 98 88.8
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 6.4e-40 169.1 178 55.6
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 8.4e-40 168.7 106 79.2
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 8.4e-40 168.7 151 54.3
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.2e-38 164.9 193 52.3
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.5e-36 157.9 129 60.5
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 8.1e-35 152.1 285 36.1
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 7.1e-31 139.0 146 52.7
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 2.4e-23 114.0 215 36.3
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.6e-22 111.3 68 83.8
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 4.3e-20 103.2 58 89.7
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 8.1e-19 99.0 55 92.7
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 6.4e-16 89.4 257 30.7
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 1.8e-13 81.3 57 70.2


User provided reference genes

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