Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005426 Vanilla planifolia HOM05D006035 ORTHO05D007155 1.0e-93 346.7 165 100.0
HPP92_008930 Vanilla planifolia HOM05D006035 ORTHO05D007155 3.2e-39 165.6 142 58.5
RcHm_v2.0_Chr4g0425671 Rosa chinensis HOM05D006035 ORTHO05D007155 2.4e-26 122.9 145 44.1
vmacro08029 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 9.0e-26 120.9 146 45.2
Duzib151G0686 Durio zibethinus HOM05D006035 ORTHO05D007155 2.0e-25 119.8 144 43.1
BcaB04g19614 Brassica carinata HOM05D006035 ORTHO05D007155 7.6e-25 117.9 152 43.4
THA.LOC104818878 Tarenaya hassleriana HOM05D006035 ORTHO05D007155 1.7e-24 116.7 153 43.1
Nn3g21749 Nelumbo nucifera HOM05D006035 ORTHO05D007155 2.2e-24 116.3 148 41.9
Aa31LG11G8120 Aethionema arabicum HOM05D006035 ORTHO05D007155 3.8e-24 115.5 147 42.9
FvH4_4g19970 Fragaria vesca HOM05D006035 ORTHO05D007155 6.4e-24 114.8 141 42.6
SGA_v2.0_scaffold64G22102 Striga asiatica HOM05D006035 ORTHO05D007155 6.4e-24 114.8 127 45.7
Cfa015301 Carpinus fangiana HOM05D006035 ORTHO05D007155 8.4e-24 114.4 147 40.8
Duzib212G0974 Durio zibethinus HOM05D006035 ORTHO05D007155 8.4e-24 114.4 149 42.3
AL8G23240 Arabidopsis lyrata HOM05D006035 ORTHO05D007155 1.1e-23 114.0 151 41.7
A09p04840 Brassica napus HOM05D006035 ORTHO05D007155 1.1e-23 114.0 152 41.4
CARHR182020 Cardamine hirsuta HOM05D006035 ORTHO05D007155 1.9e-23 113.2 145 41.4
TPR.G25406 Trifolium pratense HOM05D006035 ORTHO05D007155 1.9e-23 113.2 143 41.3
TAR633G1133 Trochodendron aralioides HOM05D006035 ORTHO05D007155 2.4e-23 112.8 142 43.0
BolC9t53448H Brassica oleracea HOM05D006035 ORTHO05D007155 3.2e-23 112.5 152 40.8
BraA09t36121Z Brassica rapa HOM05D006035 ORTHO05D007155 3.2e-23 112.5 152 41.4
BcaC04g23738 Brassica carinata HOM05D006035 ORTHO05D007155 4.2e-23 112.1 152 40.8
C09p05220 Brassica napus HOM05D006035 ORTHO05D007155 4.2e-23 112.1 152 40.8
PGR004G1138 Punica granatum HOM05D006035 ORTHO05D007155 4.2e-23 112.1 154 42.2
COL.COLO4_34598 Corchorus olitorius HOM05D006035 ORTHO05D007155 5.4e-23 111.7 149 42.3
PSO761G0247 Papaver somniferum HOM05D006035 ORTHO05D007155 5.4e-23 111.7 130 42.3
Rhsim04G0240200 Rhododendron simsii HOM05D006035 ORTHO05D007155 5.4e-23 111.7 126 43.7
SalBow8G4845 Salvia bowleyana HOM05D006035 ORTHO05D007155 5.4e-23 111.7 148 43.2
AT5G49480 Arabidopsis thaliana HOM05D006035 ORTHO05D007155 7.1e-23 111.3 148 40.5
MD16G1152300 Malus domestica HOM05D006035 ORTHO05D007155 7.1e-23 111.3 144 40.3
Medtr4g122260 Medicago truncatula HOM05D006035 ORTHO05D007155 7.1e-23 111.3 145 39.3
Thecc.04G302600 Theobroma cacao HOM05D006035 ORTHO05D007155 7.1e-23 111.3 152 38.2
Haze_01313 Corylus avellana HOM05D006035 ORTHO05D007155 9.3e-23 110.9 150 40.7
Gohir.A09G234100 Gossypium hirsutum HOM05D006035 ORTHO05D007155 9.3e-23 110.9 147 39.5
Gorai.006G257800 Gossypium raimondii HOM05D006035 ORTHO05D007155 9.3e-23 110.9 147 39.5
Oeu038775.1 Olea europaea HOM05D006035 ORTHO05D007155 1.2e-22 110.5 123 46.3
Oeu038777.1 Olea europaea HOM05D006035 ORTHO05D007155 1.2e-22 110.5 123 46.3
Gohir.D09G234900 Gossypium hirsutum HOM05D006035 ORTHO05D007155 2.1e-22 109.8 147 39.5
MD13G1151300 Malus domestica HOM05D006035 ORTHO05D007155 2.1e-22 109.8 144 38.9
Gohir.D10G179700 Gossypium hirsutum HOM05D006035 ORTHO05D007155 2.7e-22 109.4 145 41.4
Gorai.011G201000 Gossypium raimondii HOM05D006035 ORTHO05D007155 3.5e-22 109.0 144 38.9
Phvul.005G129600 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 3.5e-22 109.0 145 42.8
Sp2g19800 Schrenkiella parvula HOM05D006035 ORTHO05D007155 3.5e-22 109.0 157 41.4
SpUn0021_0050 Schrenkiella parvula HOM05D006035 ORTHO05D007155 3.5e-22 109.0 157 41.4
Ca_21435_v3 Cicer arietinum L. HOM05D006035 ORTHO05D007155 4.6e-22 108.6 145 40.7
Phvul.003G115800 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 4.6e-22 108.6 145 42.1
Glyma.17G034900 Glycine max HOM05D006035 ORTHO05D007155 7.9e-22 107.8 141 41.8
Lalb_Chr13g0298531 Lupinus albus HOM05D006035 ORTHO05D007155 7.9e-22 107.8 145 37.9
Sabra10G0113300 Salix brachista HOM05D006035 ORTHO05D007155 7.9e-22 107.8 158 36.7
Psat0s4013g0040 Pisum sativum HOM05D006035 ORTHO05D007155 1.0e-21 107.5 143 42.7
VMungo1215G2980 Vigna mungo HOM05D006035 ORTHO05D007155 1.0e-21 107.5 145 40.0
PSO210G7669 Papaver somniferum HOM05D006035 ORTHO05D007155 1.3e-21 107.1 130 41.5
Gohir.A10G173200 Gossypium hirsutum HOM05D006035 ORTHO05D007155 1.8e-21 106.7 150 40.7
PGR031G3428 Punica granatum HOM05D006035 ORTHO05D007155 1.8e-21 106.7 153 41.2
Eucgr.H04056 Eucalyptus grandis HOM05D006035 ORTHO05D007155 3.0e-21 105.9 179 34.1
Nitab4.5_0000931g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 3.9e-21 105.5 135 42.2
Actinidia31554 Actinidia chinensis HOM05D006035 ORTHO05D007155 5.1e-21 105.1 123 48.0
QL06p012626 Quercus lobata HOM05D006035 ORTHO05D007155 6.7e-21 104.8 144 39.6
Oeu042670.1 Olea europaea HOM05D006035 ORTHO05D007155 8.7e-21 104.4 150 42.7
Atru.chr4.3040 Acer truncatum HOM05D006035 ORTHO05D007155 1.1e-20 104.0 132 42.4
Aqoxy2G02699 Aquilegia oxysepala HOM05D006035 ORTHO05D007155 1.1e-20 104.0 124 43.5
Glyma.07G238700 Glycine max HOM05D006035 ORTHO05D007155 1.1e-20 104.0 140 39.3
CiPaw.01G137000 Carya illinoinensis HOM05D006035 ORTHO05D007155 1.9e-20 103.2 143 42.0
Sabra08G0078500 Salix brachista HOM05D006035 ORTHO05D007155 1.9e-20 103.2 158 36.1
unitig_32.g11850 Utricularia gibba HOM05D006035 ORTHO05D007155 1.9e-20 103.2 153 40.5
ATR0693G356 Amborella trichopoda HOM05D006035 ORTHO05D007155 3.3e-20 102.4 142 40.1
Hma1.2p1_0013F.1_g008420 Hydrangea macrophylla HOM05D006035 ORTHO05D007155 3.3e-20 102.4 125 44.0
CSS0034436 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 4.3e-20 102.1 118 45.8
Potri.010G146900 Populus trichocarpa HOM05D006035 ORTHO05D007155 4.3e-20 102.1 136 38.2
Nitab4.5_0000655g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 5.6e-20 101.7 135 40.0
Potri.008G103900 Populus trichocarpa HOM05D006035 ORTHO05D007155 5.6e-20 101.7 161 34.2
EL10Ac3g05523 Beta vulgaris HOM05D006035 ORTHO05D007155 7.4e-20 101.3 154 37.7
Migut.G00072 Erythranthe guttata HOM05D006035 ORTHO05D007155 9.6e-20 100.9 125 44.0
Sopen01g024580 Solanum pennellii HOM05D006035 ORTHO05D007155 9.6e-20 100.9 129 41.1
CSS0047932 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.3e-19 100.5 124 42.7
vmacro15178 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 1.3e-19 100.5 143 42.0
CSS0012943 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.6e-19 100.1 124 42.7
MSTRG.10157 Avicennia marina HOM05D006035 ORTHO05D007155 2.1e-19 99.8 146 41.8
CANSAT78G2193 Cannabis sativa HOM05D006035 ORTHO05D007155 2.1e-19 99.8 152 37.5
CAN.G97.9 Capsicum annuum HOM05D006035 ORTHO05D007155 2.1e-19 99.8 124 41.9
DCAR_030462 Daucus carota HOM05D006035 ORTHO05D007155 2.1e-19 99.8 144 37.5
Sed0018605 Sechium edule HOM05D006035 ORTHO05D007155 3.6e-19 99.0 142 40.1
MELO3C006721.2 Cucumis melo HOM05D006035 ORTHO05D007155 4.8e-19 98.6 140 40.0
Lalb_Chr07g0182041 Lupinus albus HOM05D006035 ORTHO05D007155 6.2e-19 98.2 144 36.8
Peaxi162Scf00228g00041 Petunia axillaris HOM05D006035 ORTHO05D007155 8.1e-19 97.8 111 43.2
AUR62039264 Chenopodium quinoa HOM05D006035 ORTHO05D007155 1.1e-18 97.4 154 37.7
Rhsim02G0003100 Rhododendron simsii HOM05D006035 ORTHO05D007155 1.1e-18 97.4 142 41.5
Solyc01g058720.4 Solanum lycopersicum HOM05D006035 ORTHO05D007155 1.1e-18 97.4 125 40.8
ClCG05G006630 Citrullus lanatus HOM05D006035 ORTHO05D007155 2.4e-18 96.3 120 43.3
Ciclev10006076m.g Citrus clementina HOM05D006035 ORTHO05D007155 2.4e-18 96.3 150 38.7
PGSC0003DMG400001204 Solanum tuberosum HOM05D006035 ORTHO05D007155 2.4e-18 96.3 129 41.1
CsaV3_3G015240 Cucumis sativus L. HOM05D006035 ORTHO05D007155 3.1e-18 95.9 124 41.9
TWI09G1568 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 3.1e-18 95.9 154 39.0
HanXRQChr11g0353881 Helianthus annuus HOM05D006035 ORTHO05D007155 4.0e-18 95.5 133 38.3
CDE08G1648 Ceratophyllum demersum HOM05D006035 ORTHO05D007155 5.3e-18 95.1 132 37.9
TWI53G1140 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 5.3e-18 95.1 142 38.0
Lsat_1_v5_gn_1_41620 Lactuca sativa HOM05D006035 ORTHO05D007155 9.0e-18 94.4 137 39.4
Cc03_g00700 Coffea canephora HOM05D006035 ORTHO05D007155 1.2e-17 94.0 140 40.0
ECA246G4755 Erigeron canadensis HOM05D006035 ORTHO05D007155 1.5e-17 93.6 116 42.2
Lj1g0017970 Lotus japonicus HOM05D006035 ORTHO05D007155 1.5e-17 93.6 148 36.5
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 3.4e-17 92.4 145 36.6
HanXRQChr05g0146001 Helianthus annuus HOM05D006035 ORTHO05D007155 5.8e-17 91.7 137 38.7
Duzib052G0321 Durio zibethinus HOM05D006035 ORTHO05D007155 9.9e-17 90.9 144 35.4
Lsat_1_v5_gn_6_116540 Lactuca sativa HOM05D006035 ORTHO05D007155 1.3e-16 90.5 135 37.8
Manes.03G205900 Manihot esculenta HOM05D006035 ORTHO05D007155 1.7e-16 90.1 125 36.8
Ah.13g071330 Amaranthus hybridus HOM05D006035 ORTHO05D007155 2.2e-16 89.7 133 36.1
Dinv44276 Davidia involucrata HOM05D006035 ORTHO05D007155 3.8e-16 89.0 139 36.0
Lsat_1_v5_gn_6_116560 Lactuca sativa HOM05D006035 ORTHO05D007155 6.4e-16 88.2 129 38.0
CSS0043064 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 2.4e-15 86.3 128 37.5
Lj6P692T31 Lonicera japonica HOM05D006035 ORTHO05D007155 2.4e-15 86.3 84 48.8
Sc19g0003080 Simmondsia chinensis HOM05D006035 ORTHO05D007155 9.3e-15 84.3 147 33.3
FAN07G1803 Fragaria x ananassa HOM05D006035 ORTHO05D007155 7.9e-14 81.3 145 33.1
SEGI_01581 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 5.6e-12 75.1 128 38.3
Zm00001eb395970 Zea mays HOM05D006035 ORTHO05D007155 1.3e-11 73.9 111 36.9
MD04G1036600 Malus domestica HOM05D006035 ORTHO05D007155 3.7e-11 72.4 84 36.9
SEGI_08802 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 8.1e-11 71.2 125 36.0
Os03g0310800 Oryza sativa ssp. japonica HOM05D006035 ORTHO05D007155 5.3e-10 68.6 108 38.9
Oeu038773.1 Olea europaea HOM05D006035 ORTHO05D007155 6.9e-10 68.2 153 35.9
unitig_60.g25532 Utricularia gibba HOM05D000135 ORTHO05D002431 7.6e-09 64.7 156 26.3
Os11g0134400 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D000451 1.7e-08 63.5 130 30.8
Os12g0132300 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D000451 2.9e-08 62.8 130 30.8
SEGI_03909 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 3.8e-08 62.4 164 26.2
Ciclev10006337m.g Citrus clementina HOM05D006035 ORTHO05D007155 6.5e-08 61.6 60 43.3
VMungo0720G0712 Vigna mungo HOM05D000227 ORTHO05D000451 6.5e-08 61.6 129 29.5
Zm00001eb196020 Zea mays HOM05D000227 ORTHO05D000451 1.1e-07 60.8 134 29.1
CSS0037530 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D000451 1.4e-07 60.5 137 28.5
MBI02_g02983_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 1.4e-07 60.5 109 31.2
CSS0041234 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D000451 2.5e-07 59.7 137 28.5
Glyma.02G143800 Glycine max HOM05D000227 ORTHO05D000451 3.2e-07 59.3 130 29.2
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 3.2e-07 59.3 68 35.3
BcaC08g47177 Brassica carinata HOM05D000135 ORTHO05D000816 7.1e-07 58.2 110 29.1
Manes.09G153600 Manihot esculenta HOM05D000227 ORTHO05D000451 7.1e-07 58.2 137 27.7
Manes.15G000900 Manihot esculenta HOM05D006035 ORTHO05D007155 9.3e-07 57.8 138 30.4
Zm00001eb093450 Zea mays HOM05D000227 ORTHO05D000451 9.3e-07 57.8 132 28.0
Eucgr.G01446 Eucalyptus grandis HOM05D000135 ORTHO05D000203 1.2e-06 57.4 113 31.0
Medtr7g115040 Medicago truncatula HOM05D000227 ORTHO05D000451 1.6e-06 57.0 137 26.3
CARHR215040 Cardamine hirsuta HOM05D000135 ORTHO05D000203 2.1e-06 56.6 114 29.8
HPP92_003538 Vanilla planifolia HOM05D000135 ORTHO05D000816 2.1e-06 56.6 142 27.5
HPP92_010963 Vanilla planifolia HOM05D000135 ORTHO05D000203 2.1e-06 56.6 113 31.9
BcaB05g25002 Brassica carinata HOM05D000135 ORTHO05D000816 2.7e-06 56.2 113 29.2
MD16G1019200 Malus domestica HOM05D000135 ORTHO05D000203 4.6e-06 55.5 129 30.2
unitig_0.g482 Utricularia gibba HOM05D000135 ORTHO05D000203 4.6e-06 55.5 110 27.3
AagrBONN_evm.TU.Sc2ySwM_117.2341 Anthoceros agrestis HOM05D002844 ORTHO05D011031 6.0e-06 55.1 146 27.4
Cpa.g.sc46.38 Carica papaya HOM05D000135 ORTHO05D000203 6.0e-06 55.1 121 31.4
Aa31LG9G17390 Aethionema arabicum HOM05D000135 ORTHO05D000203 7.9e-06 54.7 125 26.4
BcaC08g45515 Brassica carinata HOM05D000135 ORTHO05D000816 7.9e-06 54.7 118 28.0
MBI18_g12434_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 7.9e-06 54.7 144 26.4


User provided reference genes

Program Settings