Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 0.0e+00 1231.5 638 100.0
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 1.4e-111 407.9 628 39.0
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 9.2e-111 405.2 631 39.1
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 6.4e-104 382.5 625 38.2
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 1.1e-103 381.7 646 37.3
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 5.4e-103 379.4 653 36.6
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 1.2e-102 378.3 625 38.2
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 5.1e-101 372.9 637 37.2
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 1.5e-100 371.3 638 37.1
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 3.3e-100 370.2 639 36.3
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 4.3e-100 369.8 639 37.6
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 7.3e-100 369.0 639 37.6
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 2.8e-99 367.1 639 37.6
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 4.7e-99 366.3 636 36.3
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 6.2e-99 365.9 641 37.0
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 1.4e-98 364.8 630 36.0
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 2.4e-98 364.0 632 36.2
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 5.2e-98 362.8 639 37.1
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 2.2e-96 357.5 633 37.3
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 8.4e-96 355.5 638 36.2
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.1e-95 355.1 638 36.5
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 1.4e-95 354.8 647 35.9
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 1.2e-94 351.7 637 35.3
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 3.5e-94 350.1 639 36.5
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 6.0e-94 349.4 639 36.8
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 2.3e-93 347.4 645 36.3
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 3.3e-92 343.6 643 35.3
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 4.3e-92 343.2 633 37.1
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 5.6e-92 342.8 630 34.6
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 2.1e-91 340.9 634 36.0
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 2.8e-91 340.5 657 35.6
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 3.1e-90 337.0 639 36.9
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 4.0e-90 336.7 637 34.4
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 6.9e-90 335.9 641 34.8
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 9.0e-90 335.5 644 34.5
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 5.8e-89 332.8 641 34.8
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 7.6e-89 332.4 641 34.8
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.7e-88 331.3 632 34.3
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 2.9e-88 330.5 637 34.9
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 4.9e-88 329.7 644 35.4
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 4.9e-88 329.7 639 35.1
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 4.9e-88 329.7 633 35.5
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 8.4e-88 328.9 636 34.9
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 2.4e-87 327.4 636 33.8
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 4.6e-86 323.2 636 34.3
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 1.1e-84 318.5 633 34.1
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 1.1e-84 318.5 641 34.9
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 1.9e-84 317.8 628 34.1
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 9.6e-84 315.5 637 33.0
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.3e-83 315.1 443 50.1
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 1.6e-83 314.7 637 34.4
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 6.2e-83 312.8 624 34.3
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 8.1e-83 312.4 643 32.7
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 1.1e-82 312.0 641 32.1
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 1.1e-82 312.0 642 33.3
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 1.4e-82 311.6 639 33.5
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 1.8e-82 311.2 638 34.6
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 2.0e-81 307.8 632 33.9
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 2.6e-81 307.4 624 34.5
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 2.6e-81 307.4 633 34.0
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 2.6e-81 307.4 644 34.6
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 7.6e-81 305.8 635 35.0
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 7.6e-81 305.8 635 35.0
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 7.6e-81 305.8 625 33.8
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 9.9e-81 305.4 624 34.3
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 9.9e-81 305.4 635 34.8
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 9.9e-81 305.4 635 34.8
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 9.9e-81 305.4 626 33.7
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 1.3e-80 305.1 641 32.8
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 8.4e-80 302.4 627 33.7
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 8.4e-80 302.4 627 33.7
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 6.0e-78 296.2 615 34.5
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 1.8e-77 294.7 642 33.3
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 3.0e-77 293.9 640 33.8
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 5.1e-77 293.1 632 31.5
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.3e-75 288.5 647 31.7
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 1.5e-73 281.6 637 31.4
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.6e-73 280.8 649 31.6
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 1.7e-72 278.1 634 31.7
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 3.8e-72 276.9 631 31.9
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 4.2e-71 273.5 637 30.8
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 5.5e-71 273.1 651 30.9
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.2e-70 271.9 557 33.0
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 2.7e-70 270.8 662 32.0
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 5.6e-68 263.1 646 31.1
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 2.8e-67 260.8 634 32.8
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 1.2e-65 255.4 547 34.0
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 1.2e-62 245.4 622 30.9
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 2.8e-59 234.2 631 31.7
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 9.4e-55 219.2 650 27.8
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 3.3e-52 210.7 445 33.3
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 9.7e-52 209.1 625 29.4
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.3e-48 198.7 421 33.0
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 8.8e-45 186.0 627 26.2
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 4.8e-43 180.3 646 26.3
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 4.1e-42 177.2 316 34.8
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 1.5e-41 175.3 211 46.4
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 3.8e-40 170.6 620 25.5
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.7e-38 164.5 542 28.0
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.0e-37 162.5 312 34.0
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 7.4e-36 156.4 209 43.5
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 2.4e-34 151.4 387 30.2
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 4.4e-28 130.6 411 27.7
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.7e-27 128.6 244 33.2
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 5.9e-25 120.2 340 27.6
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.4e-20 104.4 303 28.1
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.1e-18 99.4 128 42.2
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 1.5e-15 89.0 125 36.8
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 3.0e-13 81.3 110 40.0
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 1.5e-12 79.0 687 22.3
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 8.3e-11 73.2 237 23.6
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 3.2e-10 71.2 206 28.6


User provided reference genes

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