Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004842 Vanilla planifolia HOM05D002502 ORTHO05D003592 8.9e-31 136.3 71 100.0
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 5.6e-25 117.1 64 95.3
HPP92_002935 Vanilla planifolia HOM05D002502 ORTHO05D003592 6.8e-23 110.2 64 89.1
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 5.4e-20 100.5 64 79.7
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 9.2e-20 99.8 64 82.8
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 1.6e-19 99.0 64 82.8
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 1.6e-19 99.0 62 85.5
TAR365G0446 Trochodendron aralioides HOM05D002502 ORTHO05D003592 1.6e-19 99.0 64 78.1
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 2.1e-19 98.6 64 82.8
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 2.1e-19 98.6 64 82.8
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 2.1e-19 98.6 64 82.8
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 2.1e-19 98.6 64 81.2
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 2.1e-19 98.6 64 81.2
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 6.0e-19 97.1 64 81.2
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 7.8e-19 96.7 64 78.1
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 1.3e-18 95.9 64 76.6
Actinidia08181 Actinidia chinensis HOM05D002502 ORTHO05D003592 1.7e-18 95.5 64 78.1
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 1.7e-18 95.5 64 76.6
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 2.3e-18 95.1 64 78.1
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 3.0e-18 94.7 64 78.1
Cc00_g01510 Coffea canephora HOM05D002502 ORTHO05D003592 3.9e-18 94.4 64 76.6
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 5.1e-18 94.0 64 76.6
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 6.6e-18 93.6 64 78.1
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 6.6e-18 93.6 64 78.1
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 6.6e-18 93.6 64 76.6
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 6.6e-18 93.6 64 79.7
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 6.6e-18 93.6 64 79.7
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 8.6e-18 93.2 64 79.7
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 8.6e-18 93.2 64 79.7
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 8.6e-18 93.2 64 78.1
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 1.1e-17 92.8 64 73.4
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.1e-17 92.8 64 78.1
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.1e-17 92.8 64 78.1
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 1.5e-17 92.4 64 75.0
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 1.5e-17 92.4 64 73.4
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 1.5e-17 92.4 64 78.1
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 1.9e-17 92.0 64 78.1
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 1.9e-17 92.0 64 75.0
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 1.9e-17 92.0 64 75.0
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 1.9e-17 92.0 64 75.0
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 1.9e-17 92.0 64 75.0
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 1.9e-17 92.0 64 75.0
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 2.5e-17 91.7 64 73.4
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 2.5e-17 91.7 64 71.9
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 2.5e-17 91.7 64 75.0
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 3.3e-17 91.3 65 73.8
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 3.3e-17 91.3 64 71.9
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 3.3e-17 91.3 64 71.9
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 3.3e-17 91.3 64 71.9
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 3.3e-17 91.3 64 71.9
CDE04G3381 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 4.3e-17 90.9 64 75.0
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 4.3e-17 90.9 64 76.6
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 4.3e-17 90.9 64 76.6
CDE12G0187 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 5.6e-17 90.5 64 75.0
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 5.6e-17 90.5 64 75.0
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 7.3e-17 90.1 64 75.0
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 7.3e-17 90.1 64 78.1
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 7.3e-17 90.1 64 78.1
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 7.3e-17 90.1 64 71.9
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 9.5e-17 89.7 64 73.4
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 9.5e-17 89.7 64 73.4
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 9.5e-17 89.7 64 76.6
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 1.2e-16 89.4 64 71.9
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 1.2e-16 89.4 64 71.9
arahy.Tifrunner.gnm1.ann1.UDT6NA Arachis hypogaea HOM05D002502 ORTHO05D003592 1.2e-16 89.4 64 71.9
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 1.2e-16 89.4 64 71.9
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 1.2e-16 89.4 64 70.3
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 1.2e-16 89.4 64 70.3
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 1.6e-16 89.0 64 70.3
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 2.8e-16 88.2 64 75.0
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 3.6e-16 87.8 64 71.9
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 3.6e-16 87.8 64 70.3
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 4.7e-16 87.4 64 75.0
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 4.7e-16 87.4 64 75.0
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 4.7e-16 87.4 64 68.8
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 6.2e-16 87.0 64 75.0
Cpa.g.c38405.2 Carica papaya HOM05D002502 ORTHO05D003592 6.2e-16 87.0 64 73.4
Cpa.g.c44337.2 Carica papaya HOM05D002502 ORTHO05D003592 6.2e-16 87.0 64 73.4
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 6.2e-16 87.0 64 75.0
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 8.1e-16 86.7 64 68.8
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 8.1e-16 86.7 64 68.8
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 8.1e-16 86.7 64 73.4
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 1.8e-15 85.5 64 73.4
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 1.8e-15 85.5 64 71.9
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 2.3e-15 85.1 64 67.2
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 2.3e-15 85.1 66 74.2
ClCG08G017240 Citrullus lanatus HOM05D002502 ORTHO05D003592 2.3e-15 85.1 64 73.4
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 2.3e-15 85.1 64 71.9
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 2.3e-15 85.1 64 71.9
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 3.1e-15 84.7 64 67.2
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 3.1e-15 84.7 64 71.9
Os06g0195900 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 3.1e-15 84.7 64 67.2
Os07g0110200 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 3.1e-15 84.7 64 67.2
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 6.8e-15 83.6 64 71.9
Zm00001eb278540 Zea mays HOM05D002502 ORTHO05D003592 6.8e-15 83.6 64 67.2
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 6.8e-15 83.6 64 67.2
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 8.9e-15 83.2 64 67.2
COL.COLO4_33612 Corchorus olitorius HOM05D002502 ORTHO05D003592 8.9e-15 83.2 64 65.6
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 8.9e-15 83.2 64 68.8
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 8.9e-15 83.2 64 67.2
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 8.9e-15 83.2 64 71.9
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 1.2e-14 82.8 64 68.8
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 2.0e-14 82.0 64 67.2
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 2.6e-14 81.6 64 70.3
Thhalv10009939m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 3.4e-14 81.3 64 68.8
MSTRG.620 Avicennia marina HOM05D002502 ORTHO05D003592 5.8e-14 80.5 64 68.8
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 5.8e-14 80.5 64 70.3
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 5.8e-14 80.5 64 70.3
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 7.5e-14 80.1 64 67.2
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 7.5e-14 80.1 64 67.2
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 7.5e-14 80.1 64 67.2
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 1.3e-13 79.3 65 70.8
PSO478G3145 Papaver somniferum HOM05D002502 ORTHO05D003592 1.7e-13 79.0 66 68.2
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 2.2e-13 78.6 64 65.6
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 2.2e-13 78.6 64 65.6
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 2.2e-13 78.6 64 65.6
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 2.2e-13 78.6 64 67.2
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 2.9e-13 78.2 64 65.6
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 3.7e-13 77.8 64 65.6
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 3.7e-13 77.8 64 65.6
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 3.7e-13 77.8 64 65.6
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 3.7e-13 77.8 64 65.6
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 3.7e-13 77.8 64 65.6
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 3.7e-13 77.8 64 65.6
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 3.7e-13 77.8 64 70.3
Prupe.5G046000 Prunus persica HOM05D002502 ORTHO05D003592 3.7e-13 77.8 57 73.7
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 6.4e-13 77.0 64 65.6
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 6.4e-13 77.0 64 64.1
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 8.3e-13 76.6 64 70.3
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 8.3e-13 76.6 64 70.3
FAN21G3969 Fragaria x ananassa HOM05D002502 ORTHO05D003592 8.3e-13 76.6 64 67.2
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 1.1e-12 76.3 64 62.5
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 1.4e-12 75.9 64 60.9
RcHm_v2.0_Chr3g0491461 Rosa chinensis HOM05D002502 ORTHO05D003592 1.4e-12 75.9 64 67.2
RcHm_v2.0_Chr5g0051921 Rosa chinensis HOM05D002502 ORTHO05D003592 1.4e-12 75.9 64 64.1
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 1.4e-12 75.9 64 67.2
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 1.9e-12 75.5 64 60.9
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 1.9e-12 75.5 64 64.1
Aa31LG1G8620 Aethionema arabicum HOM05D002502 ORTHO05D003592 2.4e-12 75.1 64 64.1
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 2.4e-12 75.1 64 59.4
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 2.4e-12 75.1 64 65.6
BcaB05g23926 Brassica carinata HOM05D002502 ORTHO05D003592 3.2e-12 74.7 64 62.5
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 3.2e-12 74.7 64 64.1
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 3.2e-12 74.7 64 62.5
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 5.4e-12 73.9 63 65.1
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 7.1e-12 73.6 63 66.7
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 7.1e-12 73.6 64 62.5
Nitab4.5_0004196g0030 Nicotiana tabacum HOM05D002502 ORTHO05D003592 7.1e-12 73.6 46 80.4
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 9.2e-12 73.2 64 62.5
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 9.2e-12 73.2 64 64.1
BcaC05g24904 Brassica carinata HOM05D002502 ORTHO05D003592 1.2e-11 72.8 64 57.8
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 1.2e-11 72.8 64 57.8
BolC5t29592H Brassica oleracea HOM05D002502 ORTHO05D003592 1.2e-11 72.8 64 57.8
CARHR010410 Cardamine hirsuta HOM05D002502 ORTHO05D003592 1.2e-11 72.8 65 63.1
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 2.1e-11 72.0 64 62.5
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 2.1e-11 72.0 64 62.5
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 3.5e-11 71.2 64 62.5
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 3.5e-11 71.2 64 62.5
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 3.5e-11 71.2 64 64.1
Thecc.09G232800 Theobroma cacao HOM05D002502 ORTHO05D003592 3.5e-11 71.2 74 58.1
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 4.6e-11 70.9 64 60.9
FAN14G2513 Fragaria x ananassa HOM05D002502 ORTHO05D003592 6.0e-11 70.5 64 62.5
unitig_26.g9281 Utricularia gibba HOM05D000407 ORTHO05D001717 7.8e-11 70.1 61 63.9
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 1.0e-10 69.7 62 64.5
FAN09G2849 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.7e-10 68.9 64 60.9
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 2.3e-10 68.6 64 62.5
Gorai.008G128300 Gossypium raimondii HOM05D002502 ORTHO05D003592 1.9e-09 65.5 64 59.4
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 2.5e-09 65.1 66 56.1
Pp3c23_20710 Physcomitrium patens HOM05D002502 ORTHO05D003592 2.5e-09 65.1 66 56.1
Gohir.D12G118600 Gossypium hirsutum HOM05D002502 ORTHO05D003592 4.3e-09 64.3 64 57.8
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 7.3e-09 63.5 53 64.2
Dinv24902 Davidia involucrata HOM05D002502 ORTHO05D003592 4.7e-08 60.8 37 75.7
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 6.2e-08 60.5 45 75.6
Nitab4.5_0009394g0010 Nicotiana tabacum HOM05D002502 ORTHO05D003592 8.1e-08 60.1 29 93.1
Lsat_1_v5_gn_8_160220 Lactuca sativa HOM05D002502 ORTHO05D003592 2.4e-07 58.5 41 70.7
THA.LOC104799100 Tarenaya hassleriana HOM05D002502 ORTHO05D003592 2.4e-07 58.5 64 54.7
SMO147G0287 Selaginella moellendorffii HOM05D002502 ORTHO05D003592 3.1e-07 58.2 62 53.2
CBR_g77869 Chara braunii HOM05D002502 ORTHO05D003592 4.0e-07 57.8 70 54.3
Ca_19739_v3 Cicer arietinum L. HOM05D002502 ORTHO05D000001 5.2e-07 57.4 30 86.7
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 6.8e-07 57.0 64 56.2
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 8.9e-07 56.6 48 60.4
Lsat_1_v5_gn_1_11821 Lactuca sativa HOM05D002502 ORTHO05D003592 2.0e-06 55.5 64 50.0
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 9.9e-06 53.1 62 51.6


User provided reference genes

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