Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 0.0e+00 1976.4 1036 100.0
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 4.8e-117 426.8 908 40.1
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.7e-106 391.7 876 40.0
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 6.3e-101 373.2 846 38.8
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 1.1e-100 372.5 871 38.5
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 3.2e-97 360.9 762 40.4
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 3.2e-97 360.9 874 35.8
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 3.2e-97 360.9 915 38.3
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 9.4e-97 359.4 909 37.6
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.6e-96 357.5 850 40.1
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.8e-95 355.1 817 39.2
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 2.3e-95 354.8 838 39.1
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 4.0e-95 354.0 887 38.1
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 4.0e-95 354.0 972 36.3
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 4.4e-94 350.5 892 38.3
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 1.7e-93 348.6 868 38.1
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 3.7e-93 347.4 1027 35.6
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 1.8e-92 345.1 904 37.7
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 7.0e-92 343.2 815 38.5
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 7.0e-92 343.2 856 38.0
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 5.9e-91 340.1 906 35.5
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 1.7e-90 338.6 885 37.7
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 3.8e-90 337.4 866 37.5
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 1.9e-89 335.1 787 39.1
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 7.2e-89 333.2 883 37.9
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 7.2e-89 333.2 864 38.1
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.1e-88 331.6 951 34.7
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 3.6e-88 330.9 883 36.5
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 6.1e-88 330.1 906 36.3
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 6.1e-88 330.1 883 36.5
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 6.1e-88 330.1 879 36.2
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 8.0e-88 329.7 889 36.3
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 1.8e-87 328.6 924 36.0
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 3.0e-87 327.8 842 38.7
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 5.2e-87 327.0 862 37.2
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 1.5e-86 325.5 826 37.5
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 2.0e-86 325.1 873 36.5
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 2.0e-86 325.1 865 38.2
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 2.6e-86 324.7 776 37.9
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 4.4e-86 323.9 896 35.2
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 5.7e-86 323.6 910 35.9
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 5.7e-86 323.6 886 36.3
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 1.7e-85 322.0 927 35.9
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 2.2e-85 321.6 815 36.9
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 1.1e-84 319.3 853 37.4
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 4.1e-84 317.4 849 37.8
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 1.6e-83 315.5 925 35.9
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 4.5e-83 313.9 1047 34.6
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 4.5e-83 313.9 884 35.7
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 5.9e-83 313.5 774 38.8
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 2.2e-82 311.6 735 41.0
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 3.2e-81 307.8 759 38.7
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 4.2e-81 307.4 851 31.5
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 5.5e-81 307.0 774 38.2
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.2e-80 305.8 898 36.5
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 4.7e-80 303.9 1099 32.9
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 8.0e-80 303.1 764 38.5
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 1.8e-79 302.0 1054 34.4
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 1.8e-79 302.0 876 35.6
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 2.3e-79 301.6 916 35.4
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 8.8e-79 299.7 844 36.7
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 4.4e-78 297.4 770 38.3
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 1.8e-76 292.0 738 33.7
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 2.4e-76 291.6 808 36.5
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 3.1e-76 291.2 782 35.2
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 3.1e-76 291.2 788 37.1
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 3.1e-76 291.2 821 37.4
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 9.2e-76 289.7 828 36.2
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 9.2e-76 289.7 782 35.2
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.6e-75 288.9 766 38.3
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 2.3e-74 285.0 903 33.7
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 6.6e-74 283.5 833 35.3
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 8.6e-74 283.1 853 34.6
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.5e-73 282.3 819 36.5
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.2e-72 279.3 694 35.7
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.2e-72 279.3 694 35.7
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 6.1e-72 276.9 848 35.1
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.0e-71 276.2 701 36.8
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 2.3e-71 275.0 701 36.8
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 3.0e-71 274.6 471 47.8
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 8.9e-71 273.1 878 34.5
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 2.6e-70 271.6 596 37.9
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 4.4e-70 270.8 896 31.8
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 7.5e-70 270.0 1032 31.8
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 6.4e-69 266.9 885 33.8
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 3.2e-68 264.6 758 36.0
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 2.7e-67 261.5 921 33.7
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 1.0e-66 259.6 734 36.9
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 3.0e-66 258.1 837 34.8
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 1.2e-64 252.7 714 37.3
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 2.1e-64 251.9 772 35.4
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 3.6e-64 251.1 855 32.4
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 3.6e-64 251.1 691 32.6
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 1.8e-63 248.8 759 35.2
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 3.1e-63 248.1 880 31.7
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.5e-62 245.7 845 33.1
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 3.7e-61 241.1 945 32.2
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 4.9e-61 240.7 695 36.3
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 2.7e-59 235.0 606 31.8
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 4.6e-59 234.2 745 35.4
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 4.6e-59 234.2 767 32.6
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 2.8e-56 224.9 510 41.8
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.8e-55 222.2 609 32.3
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 9.8e-54 216.5 529 39.1
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 1.3e-53 216.1 601 33.3
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 3.7e-53 214.5 322 50.3
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 5.4e-52 210.7 857 28.4
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 5.6e-49 200.7 619 32.0
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 3.1e-47 194.9 540 36.1
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 1.5e-46 192.6 285 51.2
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 6.4e-45 187.2 366 45.1
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 2.5e-41 175.3 253 44.3
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 4.7e-40 171.0 489 32.1
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 6.4e-29 134.0 308 35.7
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 7.1e-28 130.6 713 30.7
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.0e-26 126.7 131 47.3
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 1.8e-26 125.9 103 62.1
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.1e-25 123.2 159 42.1
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 4.3e-25 121.3 128 52.3
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 2.1e-24 119.0 526 30.0
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 8.4e-21 107.1 744 25.7
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 8.4e-21 107.1 202 53.0
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 1.1e-17 96.7 134 38.8
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.3e-16 93.2 525 26.7
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 4.0e-15 88.2 138 40.6
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 7.6e-14 84.0 129 38.8
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.0e-13 83.6 126 38.9
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 6.0e-11 74.3 416 27.4
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.9e-10 71.6 440 27.0


User provided reference genes

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