Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 8.9e-153 543.5 263 100.0
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 1.5e-104 383.3 249 72.7
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 7.9e-101 370.9 247 70.9
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 1.4e-100 370.2 229 74.2
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 1.4e-100 370.2 255 67.1
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 3.0e-100 369.0 247 69.2
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 3.0e-100 369.0 213 77.5
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 5.1e-100 368.2 249 68.7
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 1.5e-99 366.7 250 69.2
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 2.0e-99 366.3 213 76.1
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 2.0e-99 366.3 255 68.2
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 2.6e-99 365.9 261 66.3
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 3.3e-99 365.5 249 69.1
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 4.4e-99 365.2 247 67.6
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 5.7e-99 364.8 247 68.8
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 1.3e-98 363.6 257 66.1
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 1.7e-98 363.2 254 66.5
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 2.2e-98 362.8 254 67.3
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 2.2e-98 362.8 250 66.8
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 2.8e-98 362.5 255 65.1
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 2.8e-98 362.5 250 66.8
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 3.7e-98 362.1 248 67.3
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 3.7e-98 362.1 250 66.8
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 4.8e-98 361.7 245 68.6
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 4.8e-98 361.7 245 68.6
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 1.1e-97 360.5 247 66.8
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 1.4e-97 360.1 249 67.1
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 1.4e-97 360.1 217 74.7
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 1.8e-97 359.8 245 68.2
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 1.8e-97 359.8 249 66.7
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 3.1e-97 359.0 253 66.4
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 3.1e-97 359.0 250 67.2
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 4.1e-97 358.6 213 74.2
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 4.1e-97 358.6 249 67.1
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 6.9e-97 357.8 250 67.6
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 6.9e-97 357.8 241 68.9
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 9.1e-97 357.5 249 67.5
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 9.1e-97 357.5 249 67.5
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 2.0e-96 356.3 231 71.9
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 5.9e-96 354.8 211 73.9
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 5.9e-96 354.8 249 66.3
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 7.7e-96 354.4 250 66.0
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 1.0e-95 354.0 254 65.0
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 1.3e-95 353.6 249 66.7
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 1.3e-95 353.6 218 74.3
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.3e-95 353.6 251 65.7
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 1.7e-95 353.2 212 75.9
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 2.2e-95 352.8 257 64.6
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 2.2e-95 352.8 249 65.5
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 2.9e-95 352.4 253 65.6
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 2.9e-95 352.4 211 74.9
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 5.0e-95 351.7 223 71.7
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 5.0e-95 351.7 249 67.1
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 8.5e-95 350.9 234 69.2
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 1.1e-94 350.5 252 66.3
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 1.4e-94 350.1 212 75.5
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 2.5e-94 349.4 216 73.6
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 2.5e-94 349.4 213 73.7
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 3.2e-94 349.0 211 75.8
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 3.2e-94 349.0 224 70.1
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 4.2e-94 348.6 253 65.6
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 5.5e-94 348.2 213 74.6
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 5.5e-94 348.2 244 65.2
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 5.5e-94 348.2 256 64.5
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 9.4e-94 347.4 211 73.9
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 2.1e-93 346.3 257 63.4
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 2.7e-93 345.9 221 70.6
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 2.7e-93 345.9 243 65.4
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 2.7e-93 345.9 301 56.5
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 4.7e-93 345.1 253 63.6
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 6.1e-93 344.7 234 68.4
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 6.1e-93 344.7 253 63.2
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 6.1e-93 344.7 216 71.8
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 1.0e-92 344.0 211 73.5
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 1.0e-92 344.0 213 72.3
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 1.4e-92 343.6 214 71.0
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 1.4e-92 343.6 211 72.5
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 1.4e-92 343.6 248 63.7
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 1.8e-92 343.2 223 70.0
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 3.9e-92 342.0 249 63.9
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 3.9e-92 342.0 228 68.9
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 3.9e-92 342.0 262 62.6
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 6.7e-92 341.3 213 70.9
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 1.1e-91 340.5 250 63.6
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 2.6e-91 339.3 256 61.3
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 7.4e-91 337.8 265 60.4
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 1.3e-90 337.0 256 60.5
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 1.3e-90 337.0 211 71.6
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 9.1e-89 330.9 243 63.4
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 3.5e-88 328.9 249 61.8
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 3.8e-87 325.5 247 62.3
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 6.5e-87 324.7 207 70.0
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-86 322.0 186 75.8
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 5.2e-84 315.1 217 65.0
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 8.8e-84 314.3 213 66.7
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 1.5e-83 313.5 213 67.1
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 5.7e-83 311.6 248 58.5
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 7.5e-83 311.2 215 66.0
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 4.8e-82 308.5 213 64.8
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 5.3e-81 305.1 216 63.4
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 7.0e-81 304.7 213 64.8
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 7.0e-81 304.7 343 46.9
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 3.0e-76 289.3 178 73.6
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 3.5e-72 275.8 205 60.5
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 5.0e-71 271.9 315 47.0
Peaxi162Scf00558g00217 Petunia axillaris HOM05D005528 ORTHO05D007066 7.2e-70 268.1 258 51.9
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 1.8e-68 263.5 206 58.7
GSVIVG01002096001 Vitis vinifera HOM05D005528 ORTHO05D007066 1.8e-68 263.5 170 70.0
Phvul.003G083000 Phaseolus vulgaris HOM05D005528 ORTHO05D007066 3.3e-62 242.7 147 71.4
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 1.6e-61 240.4 211 56.4
Lalb_Chr15g0087931 Lupinus albus HOM05D005528 ORTHO05D007066 3.0e-60 236.1 156 67.3
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 6.8e-60 235.0 206 53.4
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 3.7e-58 229.2 176 61.4
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 1.3e-50 204.1 180 56.7
Potri.004G001701 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.1e-49 201.1 148 64.2
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 8.3e-42 174.9 117 65.8
MELO3C007429.2 Cucumis melo HOM05D005528 ORTHO05D007066 2.4e-41 173.3 139 59.0
HanXRQChr01g0006701 Helianthus annuus HOM05D005528 ORTHO05D007066 5.4e-41 172.2 148 57.4
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 2.7e-40 169.9 137 58.4
Haze_06901 Corylus avellana HOM05D005528 ORTHO05D007066 2.4e-36 156.8 254 40.2
Cre03.g164350 Chlamydomonas reinhardtii HOM05D001262 ORTHO05D001114 9.0e-28 128.3 205 36.6
PRCOL_00003009 Prasinoderma coloniale HOM05D005528 ORTHO05D007066 6.4e-26 122.1 215 30.7
MCO05G361 Micromonas commoda HOM05D001262 ORTHO05D001114 1.2e-24 117.9 214 29.0
Zm00001eb433300 Zea mays HOM05D005528 ORTHO05D007066 1.2e-24 117.9 152 40.8
CBR_g44615 Chara braunii HOM05D001262 ORTHO05D001114 3.0e-23 113.2 239 31.8
PRCOL_00004932 Prasinoderma coloniale HOM05D005528 ORTHO05D001114 5.1e-23 112.5 221 31.2
Cfa027170 Carpinus fangiana HOM05D005528 ORTHO05D007066 3.3e-22 109.8 220 30.9
AL7G31780 Arabidopsis lyrata HOM05D005528 ORTHO05D000003 9.6e-22 108.2 68 69.1
Lalb_Chr15g0087921 Lupinus albus HOM05D005528 ORTHO05D007066 9.6e-22 108.2 64 76.6
ATR0390G001 Amborella trichopoda HOM05D005528 ORTHO05D007066 4.8e-21 105.9 57 80.7
Ca_27311_v3 Cicer arietinum L. HOM05D001262 ORTHO05D001114 4.8e-21 105.9 225 31.1
Actinidia02324 Actinidia chinensis HOM05D005528 ORTHO05D007066 6.2e-21 105.5 65 72.3
MCO05G339 Micromonas commoda HOM05D005528 ORTHO05D007066 4.0e-20 102.8 208 31.7
Glyma.04G149900 Glycine max HOM05D001262 ORTHO05D001114 9.0e-20 101.7 230 30.4
Phvul.009G198700 Phaseolus vulgaris HOM05D001262 ORTHO05D001114 9.0e-20 101.7 225 30.2
QL10p003478 Quercus lobata HOM05D005528 ORTHO05D007066 9.0e-20 101.7 65 69.2
Rhsim01G0077600 Rhododendron simsii HOM05D001262 ORTHO05D001114 9.0e-20 101.7 225 29.3
DCAR_009207 Daucus carota HOM05D001262 ORTHO05D001114 1.2e-19 101.3 224 32.1
Lalb_Chr23g0275281 Lupinus albus HOM05D001262 ORTHO05D001114 3.4e-19 99.8 225 30.7
Potri.018G070700 Populus trichocarpa HOM05D001262 ORTHO05D001114 3.4e-19 99.8 224 30.4
CSS0037505 Camellia sinensis var. sinensis HOM05D001262 ORTHO05D001114 5.8e-19 99.0 225 30.7
Sabra18G0031900 Salix brachista HOM05D001262 ORTHO05D001114 5.8e-19 99.0 225 31.6
Nitab4.5_0003512g0040 Nicotiana tabacum HOM05D001262 ORTHO05D001114 7.6e-19 98.6 226 31.4
Sabra18G0061800 Salix brachista HOM05D001262 ORTHO05D001114 7.6e-19 98.6 224 29.5
MELO3C011237.2 Cucumis melo HOM05D001262 ORTHO05D001114 1.3e-18 97.8 221 31.2
HanXRQChr06g0180221 Helianthus annuus HOM05D001262 ORTHO05D001114 1.3e-18 97.8 225 32.0
BcaB05g22876 Brassica carinata HOM05D001262 ORTHO05D001114 1.7e-18 97.4 224 31.2
Lalb_Chr08g0234851 Lupinus albus HOM05D001262 ORTHO05D001114 1.7e-18 97.4 225 28.9
Prupe.7G238500 Prunus persica HOM05D001262 ORTHO05D001114 1.7e-18 97.4 225 29.8
SGA_v2.0_scaffold37G14788 Striga asiatica HOM05D001262 ORTHO05D001114 2.2e-18 97.1 225 30.7
Psat7g255120 Pisum sativum HOM05D001262 ORTHO05D001114 2.9e-18 96.7 223 30.5
TWI34G0483 Tripterygium wilfordii HOM05D001262 ORTHO05D001114 2.9e-18 96.7 223 30.0
BNapus_Darmor_BZH_scaffold_38p01830 Brassica napus HOM05D001262 ORTHO05D001114 3.8e-18 96.3 222 30.2
Actinidia40446 Actinidia chinensis HOM05D001262 ORTHO05D001114 8.4e-18 95.1 225 28.9
BcaC03g13729 Brassica carinata HOM05D001262 ORTHO05D006899 8.4e-18 95.1 222 30.2
Zm00001eb122690 Zea mays HOM05D001262 ORTHO05D001114 1.9e-17 94.0 228 29.4
MCO13G631 Micromonas commoda HOM05D005528 ORTHO05D007066 3.2e-17 93.2 222 28.8
Sp6g24350 Schrenkiella parvula HOM05D001262 ORTHO05D001114 4.2e-17 92.8 224 30.4
Cfa002014 Carpinus fangiana HOM05D001262 ORTHO05D001114 1.2e-16 91.3 223 27.4
Thhalv10011887m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 1.6e-16 90.9 60 68.3
DCAR_003042 Daucus carota HOM05D001262 ORTHO05D001114 2.3e-15 87.0 223 29.6
Os04g0669700 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 2.3e-15 87.0 73 52.1
MD10G1329700 Malus domestica HOM05D005528 ORTHO05D007066 5.1e-15 85.9 137 35.0
HanXRQChr13g0402721 Helianthus annuus HOM05D001262 ORTHO05D001114 1.1e-14 84.7 225 28.0
Glyma.07G264900 Glycine max HOM05D005528 ORTHO05D007066 7.4e-14 82.0 59 62.7
vmacro20654 Vaccinium macrocarpon HOM05D001262 ORTHO05D001114 2.8e-13 80.1 269 25.3
A02p06010 Brassica napus HOM05D001262 ORTHO05D001114 3.7e-13 79.7 195 29.2
Cfa025413 Carpinus fangiana HOM05D001262 ORTHO05D017802 1.2e-11 74.7 147 32.7
AagrBONN_evm.TU.Sc2ySwM_228.1448 Anthoceros agrestis HOM05D001262 ORTHO05D001114 1.7e-10 70.9 245 26.9
Glyma.07G264950 Glycine max HOM05D005528 ORTHO05D007066 3.8e-10 69.7 39 71.8
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 6.4e-10 68.9 88 44.3
Ciclev10009255m.g Citrus clementina HOM05D001262 ORTHO05D001114 3.2e-09 66.6 175 29.7
VMungo1309G3035 Vigna mungo HOM05D001262 ORTHO05D001114 3.2e-09 66.6 174 29.3
SMO160G0013 Selaginella moellendorffii HOM05D018706 ORTHO05D017802 9.3e-09 65.1 245 27.8
Lsat_1_v5_gn_5_31640 Lactuca sativa HOM05D001262 ORTHO05D001114 1.2e-08 64.7 196 26.5
AT1G18773 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 2.1e-08 63.9 52 51.9
Haze_16507 Corylus avellana HOM05D001262 ORTHO05D001114 2.1e-08 63.9 260 24.2
QL03p008473 Quercus lobata HOM05D005528 ORTHO05D007066 4.6e-08 62.8 40 62.5
SMO223G0010 Selaginella moellendorffii HOM05D018706 ORTHO05D017802 2.3e-07 60.5 180 30.0


User provided reference genes

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