Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_004152 Vanilla planifolia HOM05D000200 ORTHO05D000262 7.9e-95 350.5 187 100.0
Prupe.1G403500 Prunus persica HOM05D000200 ORTHO05D000262 4.4e-29 132.1 175 46.9
Nitab4.5_0000446g0100 Nicotiana tabacum HOM05D000200 ORTHO05D000262 4.6e-26 122.1 185 41.6
FAN20G1016 Fragaria x ananassa HOM05D000200 ORTHO05D000262 1.3e-25 120.6 164 45.1
Glyma.06G056500 Glycine max HOM05D000200 ORTHO05D000262 1.7e-25 120.2 186 41.9
FAN15G2973 Fragaria x ananassa HOM05D000200 ORTHO05D000262 5.0e-25 118.6 156 46.2
Eucgr.C03167 Eucalyptus grandis HOM05D000200 ORTHO05D000262 2.5e-24 116.3 174 42.5
Duzib150G1538 Durio zibethinus HOM05D000200 ORTHO05D000262 3.3e-24 115.9 163 44.2
VMungo1309G0283 Vigna mungo HOM05D000200 ORTHO05D000262 3.3e-24 115.9 150 46.7
Glyma.17G226400 Glycine max HOM05D000200 ORTHO05D000262 4.3e-24 115.5 173 45.1
Peaxi162Scf00486g00056 Petunia axillaris HOM05D000200 ORTHO05D000262 4.3e-24 115.5 185 40.5
Phvul.009G082600 Phaseolus vulgaris HOM05D000200 ORTHO05D000262 5.6e-24 115.2 185 42.2
Potri.006G220000 Populus trichocarpa HOM05D000200 ORTHO05D000262 7.3e-24 114.8 175 41.7
Migut.A00068 Erythranthe guttata HOM05D000200 ORTHO05D000262 1.2e-23 114.0 185 40.0
DCAR_004376 Daucus carota HOM05D000200 ORTHO05D000262 2.1e-23 113.2 175 40.0
arahy.Tifrunner.gnm1.ann1.10YH4S Arachis hypogaea HOM05D000200 ORTHO05D000262 2.8e-23 112.8 178 42.1
arahy.Tifrunner.gnm1.ann1.W6VW9Y Arachis hypogaea HOM05D000200 ORTHO05D000262 2.8e-23 112.8 178 42.1
Solyc08g061500.3 Solanum lycopersicum HOM05D000200 ORTHO05D000262 2.8e-23 112.8 185 40.5
Sopen08g016840 Solanum pennellii HOM05D000200 ORTHO05D000262 6.2e-23 111.7 185 40.5
Duzib168G0447 Durio zibethinus HOM05D000200 ORTHO05D000262 1.1e-22 110.9 152 45.4
Ca_15831_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 1.8e-22 110.2 150 44.0
Medtr1g015620 Medicago truncatula HOM05D000200 ORTHO05D000262 4.0e-22 109.0 185 41.1
ATR0598G155 Amborella trichopoda HOM05D000200 ORTHO05D000262 6.8e-22 108.2 191 41.9
arahy.Tifrunner.gnm1.ann1.8AA21L Arachis hypogaea HOM05D000200 ORTHO05D000262 1.5e-21 107.1 150 44.7
AL7G18360 Arabidopsis lyrata HOM05D000200 ORTHO05D000262 2.0e-21 106.7 184 38.6
Rhsim11G0002400 Rhododendron simsii HOM05D000200 ORTHO05D000262 2.0e-21 106.7 156 42.9
Ca_13115_v3 Cicer arietinum L. HOM05D000200 ORTHO05D000262 5.8e-21 105.1 174 39.7
Psat6g021960 Pisum sativum HOM05D000200 ORTHO05D000262 5.8e-21 105.1 184 38.6
RcHm_v2.0_Chr6g0311941 Rosa chinensis HOM05D000200 ORTHO05D000262 5.8e-21 105.1 163 42.9
GSVIVG01035479001 Vitis vinifera HOM05D000200 ORTHO05D000262 2.2e-20 103.2 175 40.6
Zm00001eb193160 Zea mays HOM05D000200 ORTHO05D000262 2.9e-20 102.8 184 40.8
ClCG08G009790 Citrullus lanatus HOM05D000200 ORTHO05D000262 3.7e-20 102.4 172 39.5
Glyma.04G056400 Glycine max HOM05D000200 ORTHO05D000262 6.4e-20 101.7 175 38.3
VMungo0647G0004 Vigna mungo HOM05D000200 ORTHO05D000262 6.4e-20 101.7 185 38.9
CAN.G6.26 Capsicum annuum HOM05D000200 ORTHO05D000262 1.1e-19 100.9 214 37.4
Dinv22941 Davidia involucrata HOM05D000200 ORTHO05D000262 1.9e-19 100.1 184 37.0
ECA236G1348 Erigeron canadensis HOM05D000200 ORTHO05D000262 4.1e-19 99.0 185 34.6
COL.COLO4_21150 Corchorus olitorius HOM05D000200 ORTHO05D000262 5.4e-19 98.6 146 43.8
CiPaw.15G091200 Carya illinoinensis HOM05D000200 ORTHO05D000262 7.1e-19 98.2 175 38.3
Sed0009687 Sechium edule HOM05D000200 ORTHO05D000262 7.1e-19 98.2 184 36.4
QL02p017143 Quercus lobata HOM05D000200 ORTHO05D000262 1.2e-18 97.4 174 39.7
MD08G1072000 Malus domestica HOM05D000200 ORTHO05D000262 6.0e-18 95.1 163 40.5
Nitab4.5_0003042g0020 Nicotiana tabacum HOM05D000200 ORTHO05D000262 6.0e-18 95.1 185 35.7
Atru.chr7.1838 Acer truncatum HOM05D000200 ORTHO05D000262 7.8e-18 94.7 175 38.3
PSO135G0812 Papaver somniferum HOM05D000200 ORTHO05D000262 1.0e-17 94.4 188 37.2
Actinidia27563 Actinidia chinensis HOM05D000200 ORTHO05D000262 1.3e-17 94.0 185 36.8
Manes.16G086100 Manihot esculenta HOM05D000200 ORTHO05D000262 1.3e-17 94.0 177 37.3
SGA_v2.0_scaffold20G09153 Striga asiatica HOM05D000200 ORTHO05D000262 1.3e-17 94.0 185 36.8
Lj5g0002637 Lotus japonicus HOM05D000200 ORTHO05D000262 1.7e-17 93.6 180 35.0
Phvul.001G043001 Phaseolus vulgaris HOM05D000200 ORTHO05D002544 1.7e-17 93.6 175 36.6
Haze_18305 Corylus avellana HOM05D000200 ORTHO05D000262 2.3e-17 93.2 185 36.2
HanXRQChr09g0261841 Helianthus annuus HOM05D000200 ORTHO05D000262 3.9e-17 92.4 185 35.1
MD15G1049200 Malus domestica HOM05D000200 ORTHO05D000262 3.9e-17 92.4 160 38.8
MELO3C011490.2 Cucumis melo HOM05D000200 ORTHO05D000262 6.6e-17 91.7 184 33.7
Aa31sc560G10 Aethionema arabicum HOM05D000200 ORTHO05D000262 1.1e-16 90.9 184 36.4
TPR.G13093 Trifolium pratense HOM05D000200 ORTHO05D000262 1.1e-16 90.9 162 37.7
Glyma.14G098300 Glycine max HOM05D000200 ORTHO05D000262 3.3e-16 89.4 174 40.2
Carub.0007s0726 Capsella rubella HOM05D000200 ORTHO05D000262 7.3e-16 88.2 173 35.3
Gohir.A05G038400 Gossypium hirsutum HOM05D000200 ORTHO05D000262 7.3e-16 88.2 185 35.1
vmacro00204 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 7.3e-16 88.2 185 33.5
PGR044G0143 Punica granatum HOM05D000200 ORTHO05D000262 1.2e-15 87.4 173 37.0
Aqoxy7G04126 Aquilegia oxysepala HOM05D000200 ORTHO05D000262 1.6e-15 87.0 153 38.6
Lalb_Chr14g0366441 Lupinus albus HOM05D000200 ORTHO05D000262 1.6e-15 87.0 184 32.6
Gohir.D05G040000 Gossypium hirsutum HOM05D000200 ORTHO05D000262 2.8e-15 86.3 185 35.1
Gorai.009G040400 Gossypium raimondii HOM05D000200 ORTHO05D000262 2.8e-15 86.3 185 35.1
SEGI_06884 Sequoiadendron giganteum HOM05D000200 ORTHO05D000262 4.7e-15 85.5 161 34.2
CDE05G2858 Ceratophyllum demersum HOM05D000200 ORTHO05D000262 1.1e-14 84.3 146 42.5
Sabra06G0169900 Salix brachista HOM05D000200 ORTHO05D000262 1.8e-14 83.6 190 33.2
FvH4_2g30900 Fragaria vesca HOM05D000200 ORTHO05D000262 3.1e-14 82.8 164 37.2
unitig_748.g7561 Utricularia gibba HOM05D000200 ORTHO05D000262 1.2e-13 80.9 185 32.4
Oeu018027.1 Olea europaea HOM05D000200 ORTHO05D000262 1.5e-13 80.5 175 33.1
TPR.G3566 Trifolium pratense HOM05D000200 ORTHO05D000262 1.5e-13 80.5 185 34.6
Os02g0777700 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D000262 2.0e-13 80.1 184 34.2
Cpa.g.sc126.14 Carica papaya HOM05D000200 ORTHO05D000262 3.4e-13 79.3 185 33.5
Thecc.09G064400 Theobroma cacao HOM05D000200 ORTHO05D000262 3.4e-13 79.3 175 33.7
BraA01t00480Z Brassica rapa HOM05D000200 ORTHO05D000262 4.4e-13 79.0 184 33.2
Ah.10g033900 Amaranthus hybridus HOM05D000200 ORTHO05D000262 7.6e-13 78.2 154 33.8
CSS0029194 Camellia sinensis var. sinensis HOM05D000200 ORTHO05D000262 1.3e-12 77.4 185 35.1
C01p05430 Brassica napus HOM05D000200 ORTHO05D000262 2.2e-12 76.6 184 33.7
BolC1t00523H Brassica oleracea HOM05D000200 ORTHO05D000262 2.2e-12 76.6 184 33.7
Medtr3g105200 Medicago truncatula HOM05D000200 ORTHO05D000262 2.2e-12 76.6 185 33.5
Thhalv10024207m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 1.1e-11 74.3 184 33.2
Sp7g30940 Schrenkiella parvula HOM05D000200 ORTHO05D000262 4.1e-11 72.4 184 32.1
Lj7C218T10 Lonicera japonica HOM05D000200 ORTHO05D000262 7.1e-11 71.6 117 39.3
A01p04980 Brassica napus HOM05D000200 ORTHO05D000262 9.2e-11 71.2 184 32.1
CsaV3_6G031920 Cucumis sativus L. HOM05D000200 ORTHO05D000262 2.1e-10 70.1 184 29.9
BcaC09g52131 Brassica carinata HOM05D000200 ORTHO05D000262 2.7e-10 69.7 181 31.5
Lju1964A0G17 Lonicera japonica HOM05D000200 ORTHO05D000262 2.7e-10 69.7 110 40.0
TAR624G0360 Trochodendron aralioides HOM05D000200 ORTHO05D000262 2.7e-10 69.7 185 31.9
Os10g0339400 Oryza sativa ssp. japonica HOM05D000200 ORTHO05D000262 7.8e-10 68.2 184 32.1
ClCG09G003590 Citrullus lanatus HOM05D000200 ORTHO05D000262 1.3e-09 67.4 141 36.9
MELO3C023495.2 Cucumis melo HOM05D000200 ORTHO05D000262 1.7e-09 67.0 141 36.9
CsaV3_7G031590 Cucumis sativus L. HOM05D000200 ORTHO05D000262 3.0e-09 66.2 141 36.2
Pp3c15_24240 Physcomitrium patens HOM05D000200 ORTHO05D000262 6.6e-09 65.1 145 35.9
Ciclev10010780m.g Citrus clementina HOM05D000200 ORTHO05D000262 8.6e-09 64.7 173 32.9
AUR62004888 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.1e-08 64.3 147 28.6
Rhsim09G0138800 Rhododendron simsii HOM05D000200 ORTHO05D000262 1.1e-08 64.3 185 28.1
Sed0015792 Sechium edule HOM05D000200 ORTHO05D000262 1.5e-08 63.9 132 37.1
EL10Ac2g03764 Beta vulgaris HOM05D000200 ORTHO05D000262 2.5e-08 63.2 184 29.3
QL04p000770 Quercus lobata HOM05D000200 ORTHO05D000262 7.3e-08 61.6 145 33.8
QL04p000920 Quercus lobata HOM05D000200 ORTHO05D000262 7.3e-08 61.6 145 33.8
Cfa010683 Carpinus fangiana HOM05D000200 ORTHO05D000262 9.6e-08 61.2 150 35.3
SalBow5G4903 Salvia bowleyana HOM05D000200 ORTHO05D000262 9.6e-08 61.2 159 31.4
Sed0010619 Sechium edule HOM05D000200 ORTHO05D000262 9.6e-08 61.2 165 34.5
THA.LOC104800944 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 9.6e-08 61.2 175 30.9
TWI34G1747 Tripterygium wilfordii HOM05D000200 ORTHO05D000262 9.6e-08 61.2 69 50.7
BcaNung02159 Brassica carinata HOM05D000200 ORTHO05D000262 1.2e-07 60.8 184 28.8
BolC7t46399H Brassica oleracea HOM05D000200 ORTHO05D000262 1.2e-07 60.8 184 28.8
CANSAT25G0380 Cannabis sativa HOM05D000200 ORTHO05D000262 1.2e-07 60.8 185 31.9
THA.LOC104803707 Tarenaya hassleriana HOM05D000200 ORTHO05D000262 2.8e-07 59.7 185 29.2
Cc08_g01080 Coffea canephora HOM05D000200 ORTHO05D000262 3.6e-07 59.3 184 28.3
vmacro10347 Vaccinium macrocarpon HOM05D000200 ORTHO05D000262 3.6e-07 59.3 185 27.0
FAN24G1782 Fragaria x ananassa HOM05D000200 ORTHO05D000262 4.7e-07 58.9 72 47.2
Lsat_1_v5_gn_8_70581 Lactuca sativa HOM05D000200 ORTHO05D000262 4.7e-07 58.9 185 28.6
C07p59550 Brassica napus HOM05D000200 ORTHO05D000262 6.2e-07 58.5 184 28.8
Lj9C618T10 Lonicera japonica HOM05D000200 ORTHO05D000262 6.2e-07 58.5 141 34.0
Nn8g38648 Nelumbo nucifera HOM05D000200 ORTHO05D000262 8.1e-07 58.2 175 29.1
Nitab4.5_0007788g0020 Nicotiana tabacum HOM05D000200 ORTHO05D000262 8.1e-07 58.2 141 36.9
Nitab4.5_0000385g0190 Nicotiana tabacum HOM05D000200 ORTHO05D000262 1.1e-06 57.8 141 36.9
CDE02G2151 Ceratophyllum demersum HOM05D000200 ORTHO05D000262 1.4e-06 57.4 170 28.2
Dinv43955 Davidia involucrata HOM05D000200 ORTHO05D000262 1.4e-06 57.4 145 33.1
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 1.4e-06 57.4 141 32.6
Migut.D00402 Erythranthe guttata HOM05D000200 ORTHO05D000262 1.4e-06 57.4 140 29.3
ATR0051G032 Amborella trichopoda HOM05D000200 ORTHO05D000262 1.8e-06 57.0 137 29.9
HanXRQChr04g0113721 Helianthus annuus HOM05D000200 ORTHO05D000262 1.8e-06 57.0 144 29.9
Lsat_1_v5_gn_8_91480 Lactuca sativa HOM05D000200 ORTHO05D000262 1.8e-06 57.0 162 30.2
SEGI_11549 Sequoiadendron giganteum HOM05D000555 ORTHO05D000646 3.1e-06 56.2 147 29.3
Medtr1g037500 Medicago truncatula HOM05D000200 ORTHO05D000262 4.0e-06 55.8 144 34.0
PSO421G0569 Papaver somniferum HOM05D000200 ORTHO05D000262 4.0e-06 55.8 178 28.7
Thhalv10006551m.g Eutrema salsugineum HOM05D000200 ORTHO05D000262 5.2e-06 55.5 162 31.5
Lalb_Chr20g0108271 Lupinus albus HOM05D000200 ORTHO05D000262 5.2e-06 55.5 140 30.7
Manes.08G174100 Manihot esculenta HOM05D000200 ORTHO05D000262 5.2e-06 55.5 144 33.3
GSVIVG01006004001 Vitis vinifera HOM05D000200 ORTHO05D000262 8.9e-06 54.7 145 33.8


User provided reference genes

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