Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003841 Vanilla planifolia HOM05D002041 ORTHO05D432675 3.7e-79 298.1 149 100.0
HPP92_003844 Vanilla planifolia HOM05D002041 ORTHO05D002364 2.5e-43 179.1 142 71.8
HPP92_023792 Vanilla planifolia HOM05D002041 ORTHO05D002364 3.2e-22 109.0 144 52.8
Os06g0328800 Oryza sativa ssp. japonica HOM05D002041 ORTHO05D002364 6.2e-18 94.7 154 40.9
MSTRG.24894 Avicennia marina HOM05D002041 ORTHO05D002364 4.5e-16 88.6 144 43.8
RcHm_v2.0_Chr7g0217441 Rosa chinensis HOM05D002041 ORTHO05D002364 2.2e-15 86.3 145 44.1
Zm00001eb281360 Zea mays HOM05D002041 ORTHO05D002364 3.8e-15 85.5 163 40.5
SGA_v2.0_scaffold26G11286 Striga asiatica HOM05D002041 ORTHO05D002364 1.1e-14 84.0 140 41.4
CAN.G1330.29 Capsicum annuum HOM05D002041 ORTHO05D002364 1.9e-14 83.2 143 38.5
Hund26023 Selenicereus undatus HOM05D002041 ORTHO05D002364 1.9e-14 83.2 151 39.1
CDE08G1193 Ceratophyllum demersum HOM05D002041 ORTHO05D002364 7.1e-14 81.3 143 39.9
FAN13G0686 Fragaria x ananassa HOM05D002041 ORTHO05D002364 7.1e-14 81.3 143 44.1
Hund08737 Selenicereus undatus HOM05D002041 ORTHO05D002364 7.1e-14 81.3 143 39.2
FvH4_5g26560 Fragaria vesca HOM05D002041 ORTHO05D002364 9.3e-14 80.9 143 44.1
Nn5g31076 Nelumbo nucifera HOM05D002041 ORTHO05D002364 2.1e-13 79.7 143 40.6
FAN08G1261 Fragaria x ananassa HOM05D002041 ORTHO05D002364 2.7e-13 79.3 143 39.9
Zm00001eb387850 Zea mays HOM05D002041 ORTHO05D002364 2.7e-13 79.3 146 39.7
Cpa.g.sc36.102 Carica papaya HOM05D002041 ORTHO05D002364 3.5e-13 79.0 144 39.6
Actinidia17095 Actinidia chinensis HOM05D002041 ORTHO05D002364 4.6e-13 78.6 143 43.4
Ah.14g084970 Amaranthus hybridus HOM05D002041 ORTHO05D002364 4.6e-13 78.6 146 40.4
SalBow7G2352 Salvia bowleyana HOM05D002041 ORTHO05D002364 6.0e-13 78.2 143 41.3
Ah.09g231450 Amaranthus hybridus HOM05D002041 ORTHO05D002364 7.9e-13 77.8 150 40.0
Zm00001eb252530 Zea mays HOM05D002041 ORTHO05D002364 7.9e-13 77.8 157 36.3
QL02p016151 Quercus lobata HOM05D002041 ORTHO05D002364 1.0e-12 77.4 145 38.6
Migut.C00337 Erythranthe guttata HOM05D002041 ORTHO05D002364 1.3e-12 77.0 141 42.6
Eucgr.F03619 Eucalyptus grandis HOM05D002041 ORTHO05D002364 1.3e-12 77.0 144 42.4
Duzib093G2162 Durio zibethinus HOM05D002041 ORTHO05D002364 1.8e-12 76.6 143 40.6
Os02g0712500 Oryza sativa ssp. japonica HOM05D002041 ORTHO05D002364 1.8e-12 76.6 157 36.9
Dinv05513 Davidia involucrata HOM05D002041 ORTHO05D002364 3.0e-12 75.9 143 42.0
unitig_26.g9852 Utricularia gibba HOM05D002041 ORTHO05D002364 3.0e-12 75.9 143 42.7
Manes.05G130300 Manihot esculenta HOM05D002041 ORTHO05D002364 3.9e-12 75.5 144 39.6
Sabra05G0200500 Salix brachista HOM05D002041 ORTHO05D002364 3.9e-12 75.5 143 40.6
Sc17g0004330 Simmondsia chinensis HOM05D002041 ORTHO05D002364 3.9e-12 75.5 142 38.0
SGA_v2.0_scaffold161G37848 Striga asiatica HOM05D002041 ORTHO05D002364 5.1e-12 75.1 142 39.4
Gohir.D11G328400 Gossypium hirsutum HOM05D002041 ORTHO05D002364 6.7e-12 74.7 143 36.4
Gorai.007G359700 Gossypium raimondii HOM05D002041 ORTHO05D002364 6.7e-12 74.7 143 36.4
Oeu013507.2 Olea europaea HOM05D002041 ORTHO05D002364 6.7e-12 74.7 147 38.8
CSS0039929 Camellia sinensis var. sinensis HOM05D002041 ORTHO05D002364 8.7e-12 74.3 149 38.3
CDE06G0911 Ceratophyllum demersum HOM05D002041 ORTHO05D002364 8.7e-12 74.3 139 40.3
FAN18G0987 Fragaria x ananassa HOM05D002041 ORTHO05D002364 8.7e-12 74.3 143 42.0
Gohir.A09G123700 Gossypium hirsutum HOM05D002041 ORTHO05D002364 1.1e-11 73.9 143 39.9
Gorai.006G138000 Gossypium raimondii HOM05D002041 ORTHO05D002364 1.1e-11 73.9 143 39.9
Thecc.05G159800 Theobroma cacao HOM05D002041 ORTHO05D002364 1.1e-11 73.9 146 38.4
Aqoxy5G00942 Aquilegia oxysepala HOM05D002041 ORTHO05D002364 1.5e-11 73.6 143 37.1
COL.COLO4_28196 Corchorus olitorius HOM05D002041 ORTHO05D002364 1.9e-11 73.2 143 37.1
TAR381G0011 Trochodendron aralioides HOM05D002041 ORTHO05D002364 1.9e-11 73.2 144 38.2
unitig_749.g13861 Utricularia gibba HOM05D002041 ORTHO05D002364 1.9e-11 73.2 141 41.1
Peaxi162Scf00385g00108 Petunia axillaris HOM05D002041 ORTHO05D002364 3.3e-11 72.4 74 51.4
Rhsim06G0001200 Rhododendron simsii HOM05D002041 ORTHO05D002364 3.3e-11 72.4 143 37.1
Prupe.5G001800 Prunus persica HOM05D002041 ORTHO05D002364 4.3e-11 72.0 143 39.2
Potri.005G258900 Populus trichocarpa HOM05D002041 ORTHO05D002364 5.6e-11 71.6 143 39.2
TAR381G0624 Trochodendron aralioides HOM05D002041 ORTHO05D002364 5.6e-11 71.6 144 36.8
Nn6g31573 Nelumbo nucifera HOM05D002041 ORTHO05D002364 7.4e-11 71.2 142 35.9
Aa31LG9G13500 Aethionema arabicum HOM05D002041 ORTHO05D002364 9.6e-11 70.9 142 37.3
Gohir.A11G311800 Gossypium hirsutum HOM05D002041 ORTHO05D002364 9.6e-11 70.9 141 35.5
SEGI_14293 Sequoiadendron giganteum HOM05D002041 ORTHO05D002364 9.6e-11 70.9 72 48.6
vmacro21739 Vaccinium macrocarpon HOM05D002041 ORTHO05D002364 1.3e-10 70.5 143 37.8
SEGI_17172 Sequoiadendron giganteum HOM05D002041 ORTHO05D002364 1.6e-10 70.1 75 49.3
PGSC0003DMG400009930 Solanum tuberosum HOM05D002041 ORTHO05D002364 2.1e-10 69.7 75 49.3
Solyc04g082950.4 Solanum lycopersicum HOM05D002041 ORTHO05D002364 2.8e-10 69.3 89 47.2
Sopen04g036580 Solanum pennellii HOM05D002041 ORTHO05D002364 2.8e-10 69.3 89 47.2
Atru.chr13.25 Acer truncatum HOM05D002041 ORTHO05D002364 3.7e-10 68.9 74 51.4
Nitab4.5_0009514g0060 Nicotiana tabacum HOM05D002041 ORTHO05D002364 3.7e-10 68.9 145 37.2
Actinidia15544 Actinidia chinensis HOM05D002041 ORTHO05D002364 6.2e-10 68.2 143 39.2
EL10Ac8g19100 Beta vulgaris HOM05D002041 ORTHO05D002364 6.2e-10 68.2 150 36.0
PSO017G5837 Papaver somniferum HOM05D002041 ORTHO05D002364 6.2e-10 68.2 143 36.4
Haze_22884 Corylus avellana HOM05D002041 ORTHO05D002364 1.1e-09 67.4 147 37.4
GSVIVG01013454001 Vitis vinifera HOM05D002041 ORTHO05D002364 1.4e-09 67.0 82 50.0
unitig_46.g17966 Utricularia gibba HOM05D002041 ORTHO05D002364 2.4e-09 66.2 95 43.2
Os06g0624700 Oryza sativa ssp. japonica HOM05D002041 ORTHO05D002364 3.1e-09 65.9 88 44.3
PSO017G1568 Papaver somniferum HOM05D002041 ORTHO05D002364 3.1e-09 65.9 143 35.7
PSO170G4079 Papaver somniferum HOM05D002041 ORTHO05D002364 3.1e-09 65.9 142 35.2
THA.LOC104813216 Tarenaya hassleriana HOM05D002041 ORTHO05D002364 3.1e-09 65.9 145 34.5
Cfa001160 Carpinus fangiana HOM05D002041 ORTHO05D002364 4.0e-09 65.5 72 47.2
Atru.chr10.240 Acer truncatum HOM05D002041 ORTHO05D002364 6.9e-09 64.7 120 35.0
BcaB02g10580 Brassica carinata HOM05D002041 ORTHO05D002364 6.9e-09 64.7 145 37.2
Carub.0004s1520 Capsella rubella HOM05D002041 ORTHO05D002364 6.9e-09 64.7 147 34.7
MD10G1224800 Malus domestica HOM05D002041 ORTHO05D002364 6.9e-09 64.7 72 45.8
PGR031G3161 Punica granatum HOM05D002041 ORTHO05D002364 1.2e-08 63.9 143 37.8
Prupe.4G120600 Prunus persica HOM05D002041 ORTHO05D002364 1.5e-08 63.5 72 47.2
THA.LOC104825419 Tarenaya hassleriana HOM05D002041 ORTHO05D002364 1.5e-08 63.5 143 34.3
C03p21950 Brassica napus HOM05D002041 ORTHO05D002364 5.8e-08 61.6 142 35.2
BolC3t14578H Brassica oleracea HOM05D002041 ORTHO05D002364 5.8e-08 61.6 142 35.2
Cfa014162 Carpinus fangiana HOM05D002041 ORTHO05D002364 5.8e-08 61.6 77 45.5
CsaV3_6G053150 Cucumis sativus L. HOM05D002041 ORTHO05D002364 5.8e-08 61.6 72 43.1
AL4G29240 Arabidopsis lyrata HOM05D002041 ORTHO05D002364 9.9e-08 60.8 74 45.9
A05p11960 Brassica napus HOM05D002041 ORTHO05D002364 9.9e-08 60.8 147 34.7
BraA05t20139Z Brassica rapa HOM05D002041 ORTHO05D002364 9.9e-08 60.8 147 34.7
Thhalv10016550m.g Eutrema salsugineum HOM05D002041 ORTHO05D002364 9.9e-08 60.8 148 37.2
AT4G20170 Arabidopsis thaliana HOM05D002041 ORTHO05D002364 1.7e-07 60.1 93 40.9
BcaC02g11441 Brassica carinata HOM05D002041 ORTHO05D002364 1.7e-07 60.1 142 33.1
CARHR127590 Cardamine hirsuta HOM05D002041 ORTHO05D002364 1.7e-07 60.1 86 41.9
Haze_05190 Corylus avellana HOM05D002041 ORTHO05D002364 1.7e-07 60.1 72 44.4
AT2G33570 Arabidopsis thaliana HOM05D002041 ORTHO05D002364 2.2e-07 59.7 74 44.6
C03p82820 Brassica napus HOM05D002041 ORTHO05D002364 2.2e-07 59.7 72 44.4
BolC3t20563H Brassica oleracea HOM05D002041 ORTHO05D002364 2.2e-07 59.7 72 44.4
CiPaw.07G130600 Carya illinoinensis HOM05D002041 ORTHO05D002364 2.2e-07 59.7 146 36.3
ClCG01G025940 Citrullus lanatus HOM05D002041 ORTHO05D002364 2.2e-07 59.7 72 41.7
Thhalv10024965m.g Eutrema salsugineum HOM05D002041 ORTHO05D002364 2.2e-07 59.7 72 44.4
Potri.001G074600 Populus trichocarpa HOM05D002041 ORTHO05D002364 2.2e-07 59.7 73 45.2
Manes.16G059900 Manihot esculenta HOM05D002041 ORTHO05D002364 2.9e-07 59.3 76 43.4
Sabra01G0052700 Salix brachista HOM05D002041 ORTHO05D002364 2.9e-07 59.3 73 45.2
CARHR227000 Cardamine hirsuta HOM05D002041 ORTHO05D002364 3.8e-07 58.9 72 44.4
Manes.03G072700 Manihot esculenta HOM05D002041 ORTHO05D002364 3.8e-07 58.9 76 43.4
BcaB03g11660 Brassica carinata HOM05D002041 ORTHO05D002364 4.9e-07 58.5 72 45.8
MD05G1242800 Malus domestica HOM05D002041 ORTHO05D002364 4.9e-07 58.5 72 44.4
Sp7g18600 Schrenkiella parvula HOM05D002041 ORTHO05D002364 4.9e-07 58.5 72 45.8
C01p14160 Brassica napus HOM05D002041 ORTHO05D002364 8.4e-07 57.8 72 44.4
BolC1t01380H Brassica oleracea HOM05D002041 ORTHO05D002364 8.4e-07 57.8 72 44.4
BcaNung03711 Brassica carinata HOM05D002041 ORTHO05D002364 1.1e-06 57.4 72 44.4
COL.COLO4_28201 Corchorus olitorius HOM05D002041 ORTHO05D002364 1.1e-06 57.4 143 32.9
Phvul.003G275200 Phaseolus vulgaris HOM05D002041 ORTHO05D002364 1.1e-06 57.4 74 41.9
Sed0009513 Sechium edule HOM05D002041 ORTHO05D002364 1.1e-06 57.4 72 40.3
arahy.Tifrunner.gnm1.ann1.WKJE7A Arachis hypogaea HOM05D002041 ORTHO05D002364 1.4e-06 57.0 72 41.7
Lalb_Chr15g0083641 Lupinus albus HOM05D002041 ORTHO05D002364 1.4e-06 57.0 74 41.9
Potri.003G156600 Populus trichocarpa HOM05D002041 ORTHO05D002364 1.9e-06 56.6 73 41.1
arahy.Tifrunner.gnm1.ann1.KQJ89G Arachis hypogaea HOM05D002041 ORTHO05D002364 2.4e-06 56.2 72 41.7
A01p11920 Brassica napus HOM05D002041 ORTHO05D002364 2.4e-06 56.2 72 44.4
BraA01t01134Z Brassica rapa HOM05D002041 ORTHO05D002364 2.4e-06 56.2 72 44.4
Hma1.2p1_0166F.1_g073530 Hydrangea macrophylla HOM05D002041 ORTHO05D002364 3.2e-06 55.8 72 40.3
Oeu052923.1 Olea europaea HOM05D002041 ORTHO05D002364 3.2e-06 55.8 72 40.3
C04p15510 Brassica napus HOM05D002041 ORTHO05D002364 4.2e-06 55.5 146 34.2
MELO3C006997.2 Cucumis melo HOM05D002041 ORTHO05D002364 4.2e-06 55.5 136 32.4
Eucgr.E04328 Eucalyptus grandis HOM05D002041 ORTHO05D002364 4.2e-06 55.5 74 40.5
Glyma.08G267800 Glycine max HOM05D002041 ORTHO05D002364 4.2e-06 55.5 87 40.2
Glyma.16G094100 Glycine max HOM05D002041 ORTHO05D002364 4.2e-06 55.5 75 42.7
AL7G33660 Arabidopsis lyrata HOM05D002041 ORTHO05D002364 7.1e-06 54.7 72 43.1
BcaC01g00658 Brassica carinata HOM05D002041 ORTHO05D002364 7.1e-06 54.7 128 32.0
A08p14660 Brassica napus HOM05D002041 ORTHO05D002364 7.1e-06 54.7 128 32.0
BolC4t23122H Brassica oleracea HOM05D002041 ORTHO05D002364 7.1e-06 54.7 148 33.8
BraA08t33454Z Brassica rapa HOM05D002041 ORTHO05D002364 7.1e-06 54.7 128 32.0
Lj6g0005879 Lotus japonicus HOM05D002041 ORTHO05D002364 7.1e-06 54.7 73 43.8
TPR.G28838 Trifolium pratense HOM05D002041 ORTHO05D002364 9.3e-06 54.3 110 34.5
TAR627G0873 Trochodendron aralioides HOM05D002041 ORTHO05D002364 9.3e-06 54.3 74 43.2


User provided reference genes

Program Settings