Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003316 Vanilla planifolia HOM05D000226 ORTHO05D029152 9.1e-57 223.4 117 100.0
HPP92_003318 Vanilla planifolia HOM05D000226 ORTHO05D000142 2.7e-24 115.5 87 69.0
TAR374G0535 Trochodendron aralioides HOM05D000226 ORTHO05D000142 1.6e-13 79.7 91 49.5
Zm00001eb024680 Zea mays HOM05D000226 ORTHO05D000142 8.1e-13 77.4 90 46.7
Nn3g19403 Nelumbo nucifera HOM05D000226 ORTHO05D000142 1.1e-12 77.0 88 50.0
Atru.chr6.1513 Acer truncatum HOM05D000226 ORTHO05D000142 1.4e-12 76.6 115 43.5
Dinv28995 Davidia involucrata HOM05D000226 ORTHO05D000142 1.4e-12 76.6 91 48.4
Hma1.2p1_0572F.1_g181260 Hydrangea macrophylla HOM05D000226 ORTHO05D000142 1.8e-12 76.3 90 47.8
arahy.Tifrunner.gnm1.ann1.J7P0LQ Arachis hypogaea HOM05D000226 ORTHO05D000142 2.3e-12 75.9 98 43.9
arahy.Tifrunner.gnm1.ann1.UNKR58 Arachis hypogaea HOM05D000226 ORTHO05D000142 2.3e-12 75.9 98 43.9
Oeu017066.1 Olea europaea HOM05D000226 ORTHO05D000142 3.1e-12 75.5 85 50.6
PGR031G0092 Punica granatum HOM05D000226 ORTHO05D000142 8.9e-12 73.9 93 47.3
Nn1g00190 Nelumbo nucifera HOM05D000226 ORTHO05D000142 1.2e-11 73.6 89 48.3
CSS0027302 Camellia sinensis var. sinensis HOM05D000226 ORTHO05D000142 2.6e-11 72.4 89 47.2
Nitab4.5_0000411g0020 Nicotiana tabacum HOM05D000226 ORTHO05D000142 4.4e-11 71.6 118 39.8
Sabra01G0106500 Salix brachista HOM05D000226 ORTHO05D000142 4.4e-11 71.6 98 46.9
Sabra03G0064800 Salix brachista HOM05D000226 ORTHO05D000142 4.4e-11 71.6 107 43.0
MSTRG.12170 Avicennia marina HOM05D000226 ORTHO05D000142 5.8e-11 71.2 83 54.2
Lsat_1_v5_gn_3_19261 Lactuca sativa HOM05D000226 ORTHO05D000142 7.5e-11 70.9 84 52.4
MSTRG.13740 Avicennia marina HOM05D000226 ORTHO05D000142 9.9e-11 70.5 88 43.2
TWI60G1449 Tripterygium wilfordii HOM05D000226 ORTHO05D000142 9.9e-11 70.5 101 44.6
TAR375G0724 Trochodendron aralioides HOM05D000226 ORTHO05D000142 9.9e-11 70.5 102 44.1
Lj2A233T46 Lonicera japonica HOM05D000226 ORTHO05D000142 1.3e-10 70.1 87 50.6
Nitab4.5_0003055g0010 Nicotiana tabacum HOM05D000226 ORTHO05D000142 1.3e-10 70.1 112 42.0
Peaxi162Scf00456g00213 Petunia axillaris HOM05D000226 ORTHO05D000142 1.3e-10 70.1 86 45.3
DCAR_008230 Daucus carota HOM05D000226 ORTHO05D000142 1.7e-10 69.7 83 43.4
Migut.E00753 Erythranthe guttata HOM05D000226 ORTHO05D000142 1.7e-10 69.7 93 46.2
Haze_08123 Corylus avellana HOM05D000226 ORTHO05D029152 2.2e-10 69.3 90 44.4
Haze_08139 Corylus avellana HOM05D000226 ORTHO05D000142 2.2e-10 69.3 90 44.4
Potri.001G137800 Populus trichocarpa HOM05D000226 ORTHO05D000142 2.2e-10 69.3 122 36.9
SGA_v2.0_scaffold198G41080 Striga asiatica HOM05D000226 ORTHO05D000142 2.2e-10 69.3 83 48.2
Ah.07g200850 Amaranthus hybridus HOM05D000226 ORTHO05D000142 2.9e-10 68.9 84 50.0
Cpa.g.sc90.5 Carica papaya HOM05D000226 ORTHO05D000142 4.9e-10 68.2 82 45.1
Cc08_g03370 Coffea canephora HOM05D000226 ORTHO05D000142 4.9e-10 68.2 89 47.2
FvH4_5g22940 Fragaria vesca HOM05D000226 ORTHO05D000142 4.9e-10 68.2 85 44.7
FAN13G3181 Fragaria x ananassa HOM05D000226 ORTHO05D000142 4.9e-10 68.2 85 44.7
FAN18G1839 Fragaria x ananassa HOM05D000226 ORTHO05D000142 4.9e-10 68.2 85 44.7
FAN18G2914 Fragaria x ananassa HOM05D000226 ORTHO05D000142 4.9e-10 68.2 85 44.7
Oeu028865.1 Olea europaea HOM05D000226 ORTHO05D000142 6.4e-10 67.8 92 41.3
unitig_21.g20892 Utricularia gibba HOM05D000226 ORTHO05D000142 6.4e-10 67.8 105 41.9
Aqoxy3G02204 Aquilegia oxysepala HOM05D000226 ORTHO05D000142 8.3e-10 67.4 92 45.7
Ciclev10003996m.g Citrus clementina HOM05D000226 ORTHO05D000142 8.3e-10 67.4 97 42.3
Hma1.2p1_0870F.1_g230850 Hydrangea macrophylla HOM05D000226 ORTHO05D000142 8.3e-10 67.4 92 48.9
Hund11193 Selenicereus undatus HOM05D000226 ORTHO05D000142 1.1e-09 67.0 79 50.6
FAN04G3190 Fragaria x ananassa HOM05D000226 ORTHO05D000142 1.4e-09 66.6 85 43.5
Lj2g0016393 Lotus japonicus HOM05D000226 ORTHO05D000142 1.4e-09 66.6 94 45.7
Medtr5g029320 Medicago truncatula HOM05D000226 ORTHO05D000142 1.4e-09 66.6 106 39.6
Ah.12g055430 Amaranthus hybridus HOM05D000226 ORTHO05D000142 1.9e-09 66.2 89 44.9
Ca_25181_v3 Cicer arietinum L. HOM05D000226 ORTHO05D000142 1.9e-09 66.2 119 41.2
Os10g0575600 Oryza sativa ssp. japonica HOM05D000226 ORTHO05D000142 1.9e-09 66.2 118 37.3
Manes.17G017400 Manihot esculenta HOM05D000226 ORTHO05D000142 2.4e-09 65.9 97 43.3
Potri.003G096000 Populus trichocarpa HOM05D000226 ORTHO05D000142 2.4e-09 65.9 88 48.9
Sed0015704 Sechium edule HOM05D000226 ORTHO05D000142 2.4e-09 65.9 95 47.4
TPR.G19441 Trifolium pratense HOM05D000226 ORTHO05D000142 2.4e-09 65.9 109 42.2
CiPaw.12G067600 Carya illinoinensis HOM05D000226 ORTHO05D000142 3.2e-09 65.5 98 38.8
AUR62007346 Chenopodium quinoa HOM05D000226 ORTHO05D000142 3.2e-09 65.5 84 45.2
Dinv28993 Davidia involucrata HOM05D000226 ORTHO05D000142 3.2e-09 65.5 95 43.2
Sopen08g024950 Solanum pennellii HOM05D000226 ORTHO05D000142 3.2e-09 65.5 98 43.9
EL10Ac5g12025 Beta vulgaris HOM05D000226 ORTHO05D000142 4.1e-09 65.1 82 45.1
HanXRQChr17g0538111 Helianthus annuus HOM05D000226 ORTHO05D000142 4.1e-09 65.1 82 47.6
PSO063G4151 Papaver somniferum HOM05D000226 ORTHO05D000142 4.1e-09 65.1 83 39.8
Prupe.5G029000 Prunus persica HOM05D000226 ORTHO05D000142 4.1e-09 65.1 101 40.6
QL12p001354 Quercus lobata HOM05D000226 ORTHO05D000142 4.1e-09 65.1 95 40.0
Solyc08g076370.3 Solanum lycopersicum HOM05D000226 ORTHO05D000142 4.1e-09 65.1 98 43.9
MELO3C003433.2 Cucumis melo HOM05D000226 ORTHO05D000142 5.4e-09 64.7 83 47.0
ECA246G4397 Erigeron canadensis HOM05D000226 ORTHO05D000142 5.4e-09 64.7 77 50.6
HanXRQChr06g0172641 Helianthus annuus HOM05D000226 ORTHO05D000142 5.4e-09 64.7 81 46.9
Lalb_Chr16g0381131 Lupinus albus HOM05D000226 ORTHO05D000142 5.4e-09 64.7 89 43.8
PSO782G4687 Papaver somniferum HOM05D000226 ORTHO05D000142 5.4e-09 64.7 83 39.8
RcHm_v2.0_Chr7g0211691 Rosa chinensis HOM05D000226 ORTHO05D000142 5.4e-09 64.7 79 43.0
ClCG09G011700 Citrullus lanatus HOM05D000226 ORTHO05D000142 7.1e-09 64.3 96 43.8
PGSC0003DMG400002394 Solanum tuberosum HOM05D000226 ORTHO05D000142 7.1e-09 64.3 98 43.9
MD06G1025900 Malus domestica HOM05D000226 ORTHO05D000142 9.2e-09 63.9 93 43.0
FAN08G3362 Fragaria x ananassa HOM05D000226 ORTHO05D000142 1.2e-08 63.5 85 42.4
Rhsim11G0020500 Rhododendron simsii HOM05D000226 ORTHO05D000142 1.2e-08 63.5 91 42.9
Eucgr.D02223 Eucalyptus grandis HOM05D000226 ORTHO05D000142 1.6e-08 63.2 87 43.7
Duzib068G1266 Durio zibethinus HOM05D000226 ORTHO05D000142 2.1e-08 62.8 87 40.2
CsaV3_3G048900 Cucumis sativus L. HOM05D000226 ORTHO05D000142 2.7e-08 62.4 83 44.6
Glyma.01G014600 Glycine max HOM05D000226 ORTHO05D000142 2.7e-08 62.4 83 44.6
Phvul.002G137000 Phaseolus vulgaris HOM05D000226 ORTHO05D000142 3.5e-08 62.0 84 44.0
CANSAT21G0970 Cannabis sativa HOM05D000226 ORTHO05D000142 6.0e-08 61.2 88 44.3
CANSAT21G2153 Cannabis sativa HOM05D000226 ORTHO05D000142 6.0e-08 61.2 88 44.3
Gohir.D03G175800 Gossypium hirsutum HOM05D000226 ORTHO05D000142 6.0e-08 61.2 84 41.7
Gorai.003G185000 Gossypium raimondii HOM05D000226 ORTHO05D000142 6.0e-08 61.2 84 41.7
Psat2g138440 Pisum sativum HOM05D000226 ORTHO05D000142 7.8e-08 60.8 116 38.8
VMungo1215G2371 Vigna mungo HOM05D000226 ORTHO05D000142 7.8e-08 60.8 99 42.4
Thecc.03G309000 Theobroma cacao HOM05D000226 ORTHO05D000142 1.0e-07 60.5 88 40.9
vmacro00288 Vaccinium macrocarpon HOM05D000226 ORTHO05D000142 1.0e-07 60.5 102 41.2
Duzib084G0282 Durio zibethinus HOM05D000226 ORTHO05D000142 1.3e-07 60.1 88 38.6
Gohir.A03G000036 Gossypium hirsutum HOM05D000226 ORTHO05D000142 1.3e-07 60.1 84 40.5
Gohir.A03G000037 Gossypium hirsutum HOM05D000226 ORTHO05D000142 1.3e-07 60.1 84 40.5
Gohir.D03G175700 Gossypium hirsutum HOM05D000226 ORTHO05D000142 1.3e-07 60.1 84 40.5
Gorai.003G184900 Gossypium raimondii HOM05D000226 ORTHO05D000142 1.3e-07 60.1 84 40.5
GSVIVG01013073001 Vitis vinifera HOM05D000226 ORTHO05D000142 1.3e-07 60.1 88 43.2
COL.COLO4_16955 Corchorus olitorius HOM05D000226 ORTHO05D000142 1.7e-07 59.7 85 38.8
Duzib205G1134 Durio zibethinus HOM05D000226 ORTHO05D000142 2.3e-07 59.3 82 45.1
THA.LOC104798338 Tarenaya hassleriana HOM05D000226 ORTHO05D000142 2.3e-07 59.3 87 41.4
TAR629G1986 Trochodendron aralioides HOM05D000226 ORTHO05D000142 2.3e-07 59.3 79 43.0
CAN.G726.9 Capsicum annuum HOM05D000226 ORTHO05D000142 3.0e-07 58.9 98 40.8
AUR62018653 Chenopodium quinoa HOM05D000226 ORTHO05D000142 3.0e-07 58.9 74 47.3
FAN04G0874 Fragaria x ananassa HOM05D000226 ORTHO05D000142 3.0e-07 58.9 83 44.6
Glyma.05G248800 Glycine max HOM05D000226 ORTHO05D000142 3.0e-07 58.9 84 41.7
SalBow1G1641 Salvia bowleyana HOM05D000226 ORTHO05D000142 3.0e-07 58.9 79 46.8
Glyma.08G057400 Glycine max HOM05D000226 ORTHO05D000142 3.9e-07 58.5 90 42.2
MBI19_g27699_MAGBIO Magnolia biondii HOM05D000226 ORTHO05D000142 3.9e-07 58.5 83 43.4
CDE02G0715 Ceratophyllum demersum HOM05D000226 ORTHO05D000142 5.1e-07 58.2 80 45.0
COL.COLO4_04639 Corchorus olitorius HOM05D000226 ORTHO05D000142 5.1e-07 58.2 82 43.9
Gohir.D12G272900 Gossypium hirsutum HOM05D000226 ORTHO05D000142 5.1e-07 58.2 83 42.2
Sed0013497 Sechium edule HOM05D000226 ORTHO05D000142 5.1e-07 58.2 79 41.8
Lj5C165T10 Lonicera japonica HOM05D000226 ORTHO05D000142 6.6e-07 57.8 82 42.7
Thecc.10G147300 Theobroma cacao HOM05D000226 ORTHO05D000142 6.6e-07 57.8 82 45.1
AT1G73360 Arabidopsis thaliana HOM05D000226 ORTHO05D000142 8.6e-07 57.4 84 40.5
CiPaw.11G097700 Carya illinoinensis HOM05D000226 ORTHO05D000142 8.6e-07 57.4 93 39.8
Haze_18987 Corylus avellana HOM05D000226 ORTHO05D000142 8.6e-07 57.4 81 43.2
Duzib068G0073 Durio zibethinus HOM05D000226 ORTHO05D000142 8.6e-07 57.4 82 43.9
FvH4_5g18090 Fragaria vesca HOM05D000226 ORTHO05D000142 8.6e-07 57.4 83 43.4
FAN08G0376 Fragaria x ananassa HOM05D000226 ORTHO05D000142 8.6e-07 57.4 83 43.4
FAN18G3808 Fragaria x ananassa HOM05D000226 ORTHO05D000142 8.6e-07 57.4 83 43.4
Gohir.A12G272100 Gossypium hirsutum HOM05D000226 ORTHO05D000142 8.6e-07 57.4 81 42.0
ClCG04G012660 Citrullus lanatus HOM05D000226 ORTHO05D000142 1.1e-06 57.0 79 41.8
Duzib084G0044 Durio zibethinus HOM05D000226 ORTHO05D000142 1.1e-06 57.0 82 41.5
Atru.chr9.1572 Acer truncatum HOM05D000226 ORTHO05D000142 1.5e-06 56.6 89 41.6
CDE05G2492 Ceratophyllum demersum HOM05D000226 ORTHO05D000142 1.5e-06 56.6 79 40.5
Gorai.008G293300 Gossypium raimondii HOM05D000226 ORTHO05D000142 1.5e-06 56.6 81 42.0
Prupe.5G240900 Prunus persica HOM05D000226 ORTHO05D000142 1.5e-06 56.6 79 41.8
QL10p032687 Quercus lobata HOM05D000226 ORTHO05D000142 1.5e-06 56.6 81 42.0
RcHm_v2.0_Chr7g0177521 Rosa chinensis HOM05D000226 ORTHO05D000142 1.5e-06 56.6 83 43.4
Aqoxy3G00008 Aquilegia oxysepala HOM05D000226 ORTHO05D000142 1.9e-06 56.2 82 42.7
Cfa020682 Carpinus fangiana HOM05D000226 ORTHO05D000142 1.9e-06 56.2 85 41.2
Duzib205G0784 Durio zibethinus HOM05D000226 ORTHO05D000142 2.5e-06 55.8 88 39.8
FAN13G1281 Fragaria x ananassa HOM05D000226 ORTHO05D000142 2.5e-06 55.8 83 42.2
Lalb_Chr22g0353741 Lupinus albus HOM05D000226 ORTHO05D000142 2.5e-06 55.8 81 40.7
MD06G1236400 Malus domestica HOM05D000226 ORTHO05D000142 2.5e-06 55.8 79 41.8
MD16G1280500 Malus domestica HOM05D000226 ORTHO05D000142 2.5e-06 55.8 81 45.7
Sabra12G0026900 Salix brachista HOM05D000226 ORTHO05D000142 2.5e-06 55.8 83 41.0
TAR374G0218 Trochodendron aralioides HOM05D000226 ORTHO05D000142 2.5e-06 55.8 82 41.5
TAR374G0286 Trochodendron aralioides HOM05D000226 ORTHO05D000142 2.5e-06 55.8 82 41.5
CARHR174540 Cardamine hirsuta HOM05D000226 ORTHO05D000142 3.3e-06 55.5 76 42.1
Carub.0002s2010 Capsella rubella HOM05D000226 ORTHO05D000142 4.3e-06 55.1 87 39.1
MBI13_g21685_MAGBIO Magnolia biondii HOM05D000226 ORTHO05D000142 4.3e-06 55.1 81 40.7
Lalb_Chr05g0221381 Lupinus albus HOM05D000226 ORTHO05D000142 5.6e-06 54.7 85 40.0
VMungo0720G2102 Vigna mungo HOM05D000226 ORTHO05D029152 5.6e-06 54.7 78 38.5
Ciclev10019153m.g Citrus clementina HOM05D000226 ORTHO05D000142 7.3e-06 54.3 85 41.2
Glyma.09G207500 Glycine max HOM05D000226 ORTHO05D000142 7.3e-06 54.3 98 35.7
Glyma.09G265200 Glycine max HOM05D000226 ORTHO05D000142 9.5e-06 53.9 74 43.2
Phvul.004G143500 Phaseolus vulgaris HOM05D000226 ORTHO05D000142 9.5e-06 53.9 85 42.4
Potri.012G038500 Populus trichocarpa HOM05D000226 ORTHO05D000142 9.5e-06 53.9 83 38.6
Potri.015G034100 Populus trichocarpa HOM05D000226 ORTHO05D000142 9.5e-06 53.9 82 41.5
Sabra15G0028300 Salix brachista HOM05D000226 ORTHO05D000142 9.5e-06 53.9 82 41.5
TWI60G0771 Tripterygium wilfordii HOM05D000226 ORTHO05D000142 9.5e-06 53.9 82 40.2
HPP92_009436 Vanilla planifolia HOM05D000226 ORTHO05D000142 9.5e-06 53.9 80 37.5


User provided reference genes

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