Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_003166 Vanilla planifolia HOM05D005775 ORTHO05D000023 1.5e-247 859.4 524 100.0
CSS0012831 Camellia sinensis var. sinensis HOM05D005775 ORTHO05D000023 1.4e-77 294.7 446 48.0
ATR0487G016 Amborella trichopoda HOM05D005775 ORTHO05D000023 7.1e-77 292.4 437 49.0
Prupe.8G249700 Prunus persica HOM05D005775 ORTHO05D000023 1.8e-75 287.7 506 44.9
ClCG00G003600 Citrullus lanatus HOM05D005775 ORTHO05D000023 1.1e-74 285.0 414 39.6
Aqoxy2G03167 Aquilegia oxysepala HOM05D005775 ORTHO05D000023 9.7e-74 282.0 504 43.3
Haze_04786 Corylus avellana HOM05D005775 ORTHO05D000023 3.7e-73 280.0 493 44.6
Rhsim01G0278600 Rhododendron simsii HOM05D005775 ORTHO05D000023 2.0e-71 274.2 489 43.4
MBI18_g06533_MAGBIO Magnolia biondii HOM05D005775 ORTHO05D000023 2.6e-71 273.9 416 49.5
Thecc.01G287300 Theobroma cacao HOM05D005775 ORTHO05D000023 2.2e-70 270.8 390 50.3
Gorai.004G084600 Gossypium raimondii HOM05D005775 ORTHO05D000023 3.8e-70 270.0 458 46.5
Gohir.D08G079600 Gossypium hirsutum HOM05D005775 ORTHO05D000023 5.0e-70 269.6 427 47.8
Lj2C1182T1 Lonicera japonica HOM05D005775 ORTHO05D000023 5.0e-70 269.6 436 47.0
Gohir.A08G071400 Gossypium hirsutum HOM05D005775 ORTHO05D000023 1.9e-69 267.7 427 47.8
vmacro02530 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 5.1e-67 259.6 436 45.0
Actinidia24301 Actinidia chinensis HOM05D005775 ORTHO05D000023 6.7e-67 259.2 435 46.4
Ciclev10019759m.g Citrus clementina HOM05D005775 ORTHO05D000023 1.9e-66 257.7 490 43.9
Peaxi162Scf00517g00426 Petunia axillaris HOM05D005775 ORTHO05D000023 2.5e-66 257.3 435 45.1
DCAR_005831 Daucus carota HOM05D005775 ORTHO05D000023 4.3e-66 256.5 410 46.3
Manes.01G212200 Manihot esculenta HOM05D005775 ORTHO05D000023 2.8e-65 253.8 468 44.0
SHI15422 Sapria himalayana HOM05D005775 ORTHO05D000023 8.2e-65 252.3 387 37.5
Zm00001eb287820 Zea mays HOM05D005775 ORTHO05D000023 4.1e-64 250.0 406 48.3
RcHm_v2.0_Chr6g0292231 Rosa chinensis HOM05D005775 ORTHO05D000023 5.3e-64 249.6 454 43.4
Dinv11278 Davidia involucrata HOM05D005775 ORTHO05D000023 1.5e-63 248.1 435 45.5
Potri.016G119600 Populus trichocarpa HOM05D005775 ORTHO05D000023 2.6e-63 247.3 392 45.2
THA.LOC104800814 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 7.7e-63 245.7 473 42.5
Lj1g0019119 Lotus japonicus HOM05D005775 ORTHO05D000023 1.0e-62 245.4 476 42.4
FAN20G1843 Fragaria x ananassa HOM05D005775 ORTHO05D000023 2.2e-62 244.2 437 44.6
Sc17g0003740 Simmondsia chinensis HOM05D005775 ORTHO05D000023 3.8e-62 243.4 437 45.1
Glyma.03G148400 Glycine max HOM05D005775 ORTHO05D000023 6.5e-62 242.7 409 44.7
Eucgr.H01610 Eucalyptus grandis HOM05D005775 ORTHO05D000023 8.5e-62 242.3 461 43.2
TAR365G0919 Trochodendron aralioides HOM05D005775 ORTHO05D000023 1.4e-61 241.5 442 44.1
CARHR124250 Cardamine hirsuta HOM05D005775 ORTHO05D000023 7.2e-61 239.2 431 43.4
Hma1.2p1_0209F.1_g089290 Hydrangea macrophylla HOM05D005775 ORTHO05D000023 9.4e-61 238.8 432 45.1
TWI14G1024 Tripterygium wilfordii HOM05D005775 ORTHO05D000023 9.4e-61 238.8 438 43.2
Carub.0004s1199 Capsella rubella HOM05D005775 ORTHO05D000023 1.2e-60 238.4 430 43.7
Os05g0407900 Oryza sativa ssp. japonica HOM05D005775 ORTHO05D000023 1.6e-60 238.0 385 45.5
GSVIVG01011040001 Vitis vinifera HOM05D005775 ORTHO05D000023 1.6e-60 238.0 446 44.4
Aa31LG5G6080 Aethionema arabicum HOM05D005775 ORTHO05D000023 2.1e-60 237.7 435 43.9
Lalb_Chr17g0335721 Lupinus albus HOM05D005775 ORTHO05D000023 2.7e-60 237.3 501 40.1
BraA04t17874Z Brassica rapa HOM05D005775 ORTHO05D000023 4.7e-60 236.5 432 42.8
Thhalv10016605m.g Eutrema salsugineum HOM05D005775 ORTHO05D000023 6.1e-60 236.1 437 42.3
AT2G30780 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 1.8e-59 234.6 430 43.3
Hund05366 Selenicereus undatus HOM05D005775 ORTHO05D000023 1.8e-59 234.6 435 42.8
C04p59780 Brassica napus HOM05D005775 ORTHO05D000023 2.3e-59 234.2 432 43.3
Sabra16G0115500 Salix brachista HOM05D005775 ORTHO05D000023 2.3e-59 234.2 439 42.8
A04p23470 Brassica napus HOM05D005775 ORTHO05D000023 3.0e-59 233.8 432 43.3
BolC4t27488H Brassica oleracea HOM05D005775 ORTHO05D000023 3.0e-59 233.8 432 42.8
Dinv32979 Davidia involucrata HOM05D005775 ORTHO05D000023 3.9e-59 233.4 447 43.8
FAN27G3110 Fragaria x ananassa HOM05D005775 ORTHO05D000023 3.9e-59 233.4 366 48.1
THA.LOC104817539 Tarenaya hassleriana HOM05D005775 ORTHO05D000023 6.7e-59 232.6 451 40.4
Sp4g13280 Schrenkiella parvula HOM05D005775 ORTHO05D000023 8.8e-59 232.3 432 41.7
TAR636G1825 Trochodendron aralioides HOM05D005775 ORTHO05D000023 2.6e-58 230.7 436 43.3
Medtr5g076010 Medicago truncatula HOM05D005775 ORTHO05D000023 1.7e-57 228.0 435 43.0
Carub.0004s3072 Capsella rubella HOM05D005775 ORTHO05D000023 2.8e-57 227.3 386 38.6
QL12p023176 Quercus lobata HOM05D005775 ORTHO05D000023 3.7e-57 226.9 436 41.7
AUR62037928 Chenopodium quinoa HOM05D005775 ORTHO05D000023 4.8e-57 226.5 375 46.7
Glyma.19G151700 Glycine max HOM05D005775 ORTHO05D000023 4.1e-56 223.4 432 41.7
Medtr2g049540 Medicago truncatula HOM05D005775 ORTHO05D000023 4.1e-56 223.4 435 42.5
Lsat_1_v5_gn_6_117561 Lactuca sativa HOM05D005775 ORTHO05D000023 5.3e-56 223.0 399 48.6
Sed0017897 Sechium edule HOM05D005775 ORTHO05D000023 5.3e-56 223.0 393 45.5
HanXRQChr12g0362741 Helianthus annuus HOM05D005775 ORTHO05D000023 9.1e-56 222.2 396 42.9
BcaB02g10341 Brassica carinata HOM05D005775 ORTHO05D000023 1.2e-55 221.9 417 49.4
AL4G25710 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 2.0e-55 221.1 420 43.6
C04p19810 Brassica napus HOM05D005775 ORTHO05D000023 7.7e-55 219.2 395 33.9
DCAR_002776 Daucus carota HOM05D005775 ORTHO05D000023 7.7e-55 219.2 388 42.3
EL10Ac7g17159 Beta vulgaris HOM05D005775 ORTHO05D000023 1.3e-54 218.4 369 45.5
SEGI_28259 Sequoiadendron giganteum HOM05D005775 ORTHO05D000023 1.3e-54 218.4 393 45.0
Cc01_g19990 Coffea canephora HOM05D005775 ORTHO05D000023 1.7e-54 218.0 385 45.2
Cpa.g.sc731.2 Carica papaya HOM05D005775 ORTHO05D000023 2.2e-54 217.6 466 40.8
COL.COLO4_08057 Corchorus olitorius HOM05D005775 ORTHO05D000023 2.2e-54 217.6 454 41.6
HanXRQChr09g0252061 Helianthus annuus HOM05D005775 ORTHO05D000023 2.2e-54 217.6 440 41.6
Rhsim13G0020300 Rhododendron simsii HOM05D005775 ORTHO05D000023 3.8e-54 216.9 435 41.8
ClCG00G000240 Citrullus lanatus HOM05D005775 ORTHO05D000023 5.0e-54 216.5 414 42.8
ClCG10G003500 Citrullus lanatus HOM05D005775 ORTHO05D000023 5.0e-54 216.5 414 42.8
CAN.G438.46 Capsicum annuum HOM05D005775 ORTHO05D000023 6.5e-54 216.1 435 41.6
PSO541G6072 Papaver somniferum HOM05D005775 ORTHO05D000023 1.1e-53 215.3 469 42.4
Oeu047904.1 Olea europaea HOM05D005775 ORTHO05D000023 4.2e-53 213.4 441 40.6
MELO3C014018.2 Cucumis melo HOM05D005775 ORTHO05D000023 7.2e-53 212.6 457 41.4
MD03G1273200 Malus domestica HOM05D005775 ORTHO05D000023 2.7e-52 210.7 475 39.6
AL4G25690 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 6.1e-52 209.5 407 42.8
CiPaw.09G181700 Carya illinoinensis HOM05D005775 ORTHO05D000023 8.0e-52 209.1 436 40.4
Solyc07g053060.3 Solanum lycopersicum HOM05D005775 ORTHO05D000023 8.0e-52 209.1 443 41.8
ECA234G1745 Erigeron canadensis HOM05D005775 ORTHO05D000023 1.4e-51 208.4 515 37.3
CANSAT25G1854 Cannabis sativa HOM05D005775 ORTHO05D000023 1.8e-51 208.0 436 41.3
ClCG00G000230 Citrullus lanatus HOM05D005775 ORTHO05D000023 2.3e-51 207.6 222 47.7
Phvul.001G146400 Phaseolus vulgaris HOM05D005775 ORTHO05D000023 2.3e-51 207.6 386 41.7
CsaV3_3G003500 Cucumis sativus L. HOM05D005775 ORTHO05D000023 3.0e-51 207.2 415 43.1
Aa31LG1G29420 Aethionema arabicum HOM05D005775 ORTHO05D000023 8.8e-51 205.7 398 39.9
FAN24G2890 Fragaria x ananassa HOM05D005775 ORTHO05D000023 8.8e-51 205.7 438 41.8
AUR62043492 Chenopodium quinoa HOM05D005775 ORTHO05D006285 3.3e-50 203.8 354 46.3
VMungo1383G3055 Vigna mungo HOM05D005775 ORTHO05D000023 4.4e-50 203.4 414 40.3
FAN15G0955 Fragaria x ananassa HOM05D005775 ORTHO05D000023 7.4e-50 202.6 437 40.5
Ah.08g220410 Amaranthus hybridus HOM05D005775 ORTHO05D000023 1.3e-49 201.8 383 41.8
Migut.N02129 Erythranthe guttata HOM05D005775 ORTHO05D000023 4.8e-49 199.9 460 40.7
Sed0008104 Sechium edule HOM05D005775 ORTHO05D000023 4.8e-49 199.9 385 45.2
AT2G48000 Arabidopsis thaliana HOM05D005775 ORTHO05D000023 1.4e-48 198.4 405 40.7
CARHR143390 Cardamine hirsuta HOM05D005775 ORTHO05D000023 1.4e-48 198.4 403 40.2
Sopen07g026610 Solanum pennellii HOM05D005775 ORTHO05D000023 9.1e-48 195.7 443 40.4
PGSC0003DMG400026158 Solanum tuberosum HOM05D005775 ORTHO05D000023 1.6e-47 194.9 443 40.6
PSO302G0009 Papaver somniferum HOM05D005775 ORTHO05D000023 1.0e-46 192.2 370 44.9
Psat1g018400 Pisum sativum HOM05D005775 ORTHO05D000023 2.2e-46 191.0 419 39.1
SalBow2G0958 Salvia bowleyana HOM05D005775 ORTHO05D000023 2.2e-46 191.0 505 36.4
Migut.O00883 Erythranthe guttata HOM05D005775 ORTHO05D000023 3.8e-46 190.3 386 43.0
Ca_02584_v3 Cicer arietinum L. HOM05D005775 ORTHO05D000023 5.0e-46 189.9 484 37.8
MSTRG.12583 Avicennia marina HOM05D005775 ORTHO05D000023 1.5e-45 188.3 435 39.3
unitig_21.g20288 Utricularia gibba HOM05D005775 ORTHO05D000023 1.5e-45 188.3 450 39.3
TPR.G17547 Trifolium pratense HOM05D005775 ORTHO05D000023 4.2e-45 186.8 486 37.9
arahy.Tifrunner.gnm1.ann1.9RSW73 Arachis hypogaea HOM05D005775 ORTHO05D000023 7.2e-45 186.0 510 36.3
SGA_v2.0_scaffold172G39044 Striga asiatica HOM05D005775 ORTHO05D000023 1.6e-44 184.9 435 38.9
arahy.Tifrunner.gnm1.ann1.84DKWJ Arachis hypogaea HOM05D005775 ORTHO05D000023 2.1e-44 184.5 510 37.5
TPR.G16641 Trifolium pratense HOM05D005775 ORTHO05D000023 2.4e-40 171.0 419 37.9
Atru.chr5.1309 Acer truncatum HOM05D005775 ORTHO05D000023 2.7e-39 167.5 369 43.4
Atru.BG.65.p Acer truncatum HOM05D005775 ORTHO05D000023 7.7e-39 166.0 349 44.4
vmacro14952 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 1.7e-38 164.9 343 44.6
FvH4_2g24360 Fragaria vesca HOM05D005775 ORTHO05D000023 1.5e-37 161.8 145 51.0
Nn5g27607 Nelumbo nucifera HOM05D005775 ORTHO05D000023 1.4e-32 145.2 241 40.2
PSO675G7470 Papaver somniferum HOM05D005775 ORTHO05D000023 2.0e-31 141.4 332 43.1
MD11G1295900 Malus domestica HOM05D005775 ORTHO05D000023 8.3e-25 119.4 119 46.2
AL4G47600 Arabidopsis lyrata HOM05D005775 ORTHO05D000023 3.1e-24 117.5 137 39.4
CDE10G1068 Ceratophyllum demersum HOM05D005775 ORTHO05D000023 3.5e-23 114.0 161 42.9
MD11G1295800 Malus domestica HOM05D005775 ORTHO05D000023 6.1e-20 103.2 132 37.9
BolC4t23514H Brassica oleracea HOM05D005775 ORTHO05D000023 1.7e-14 85.1 99 44.4
Actinidia00716 Actinidia chinensis HOM05D005775 ORTHO05D000023 2.3e-14 84.7 127 40.9
Pp3c2_3210 Physcomitrium patens HOM05D005775 ORTHO05D000023 3.1e-11 74.3 128 33.6
Actinidia24862 Actinidia chinensis HOM05D005775 ORTHO05D000023 2.0e-10 71.6 56 57.1
Pp3c1_37670 Physcomitrium patens HOM05D005775 ORTHO05D000023 1.9e-08 65.1 112 34.8
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 5.4e-08 63.5 144 32.6
VMungo1309G1222 Vigna mungo HOM05D001779 ORTHO05D001753 5.1e-06 57.0 92 31.5
Mapoly0072s0009 Marchantia polymorpha HOM05D005775 ORTHO05D000023 6.6e-06 56.6 146 29.5


User provided reference genes

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