Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002934 Vanilla planifolia HOM05D002502 ORTHO05D017711 1.3e-55 219.5 112 100.0
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 2.2e-28 129.0 91 74.7
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 1.6e-13 79.7 63 66.7
Cpa.g.sc84.61 Carica papaya HOM05D002502 ORTHO05D003592 1.7e-12 76.3 64 64.1
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 1.7e-12 76.3 90 50.0
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 2.2e-12 75.9 64 62.5
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 3.8e-12 75.1 62 62.9
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 5.0e-12 74.7 64 62.5
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 8.5e-12 73.9 64 62.5
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 8.5e-12 73.9 64 62.5
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 8.5e-12 73.9 62 61.3
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 8.5e-12 73.9 64 60.9
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 1.1e-11 73.6 67 59.7
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 1.1e-11 73.6 67 59.7
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 1.1e-11 73.6 63 61.9
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 1.1e-11 73.6 69 58.0
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 1.1e-11 73.6 91 49.5
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 1.1e-11 73.6 91 48.4
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 1.1e-11 73.6 63 61.9
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 1.1e-11 73.6 90 47.8
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 1.1e-11 73.6 62 61.3
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 1.5e-11 73.2 63 61.9
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 1.5e-11 73.2 69 58.0
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 1.5e-11 73.2 64 60.9
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 1.9e-11 72.8 64 59.4
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.9e-11 72.8 64 60.9
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 1.9e-11 72.8 63 60.3
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 2.5e-11 72.4 64 60.9
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 3.2e-11 72.0 63 58.7
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 3.2e-11 72.0 63 60.3
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 3.2e-11 72.0 63 60.3
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 3.2e-11 72.0 68 58.8
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 4.2e-11 71.6 88 48.9
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 4.2e-11 71.6 88 48.9
Gorai.008G128300 Gossypium raimondii HOM05D002502 ORTHO05D003592 4.2e-11 71.6 64 59.4
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 4.2e-11 71.6 62 59.7
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 4.2e-11 71.6 63 58.7
Actinidia08181 Actinidia chinensis HOM05D002502 ORTHO05D003592 5.5e-11 71.2 63 60.3
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 5.5e-11 71.2 63 60.3
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 5.5e-11 71.2 64 57.8
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 5.5e-11 71.2 64 57.8
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 5.5e-11 71.2 64 57.8
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 5.5e-11 71.2 62 59.7
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 5.5e-11 71.2 68 57.4
vmacro19268 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 5.5e-11 71.2 93 49.5
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 7.2e-11 70.9 69 55.1
Lj5g0005383 Lotus japonicus HOM05D002502 ORTHO05D017711 7.2e-11 70.9 70 55.7
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 7.2e-11 70.9 61 60.7
Nitab4.5_0000592g0070 Nicotiana tabacum HOM05D002502 ORTHO05D003592 7.2e-11 70.9 92 48.9
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 7.2e-11 70.9 64 59.4
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 9.4e-11 70.5 63 57.1
Gohir.D12G118600 Gossypium hirsutum HOM05D002502 ORTHO05D003592 9.4e-11 70.5 62 59.7
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 1.2e-10 70.1 63 58.7
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 1.2e-10 70.1 63 58.7
ClCG08G017240 Citrullus lanatus HOM05D002502 ORTHO05D003592 1.2e-10 70.1 63 60.3
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 1.2e-10 70.1 61 60.7
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 1.2e-10 70.1 63 58.7
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 1.2e-10 70.1 63 58.7
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 1.2e-10 70.1 90 50.0
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 1.2e-10 70.1 62 61.3
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 1.2e-10 70.1 75 53.3
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 1.2e-10 70.1 83 49.4
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 1.6e-10 69.7 61 60.7
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 1.6e-10 69.7 63 58.7
Nitab4.5_0004196g0030 Nicotiana tabacum HOM05D002502 ORTHO05D003592 1.6e-10 69.7 83 51.8
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 1.6e-10 69.7 63 60.3
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 1.6e-10 69.7 63 60.3
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 1.6e-10 69.7 61 60.7
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 1.6e-10 69.7 68 55.9
GSVIVG01034588001 Vitis vinifera HOM05D002502 ORTHO05D003592 1.6e-10 69.7 58 62.1
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 2.7e-10 68.9 63 58.7
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 2.7e-10 68.9 63 57.1
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 2.7e-10 68.9 62 56.5
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 2.7e-10 68.9 61 59.0
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 3.6e-10 68.6 64 56.2
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 3.6e-10 68.6 63 57.1
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 3.6e-10 68.6 63 58.7
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 3.6e-10 68.6 92 46.7
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 3.6e-10 68.6 63 58.7
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 4.7e-10 68.2 61 59.0
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 4.7e-10 68.2 61 59.0
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 4.7e-10 68.2 63 55.6
Thhalv10009939m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 4.7e-10 68.2 88 45.5
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 4.7e-10 68.2 62 58.1
vmacro20354 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 4.7e-10 68.2 93 48.4
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 6.1e-10 67.8 61 57.4
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 6.1e-10 67.8 63 57.1
FAN02G3956 Fragaria x ananassa HOM05D002502 ORTHO05D003592 6.1e-10 67.8 90 48.9
Medtr2g078050 Medicago truncatula HOM05D002502 ORTHO05D003592 6.1e-10 67.8 68 55.9
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 8.0e-10 67.4 64 54.7
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 8.0e-10 67.4 61 57.4
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 8.0e-10 67.4 61 57.4
COL.COLO4_33612 Corchorus olitorius HOM05D002502 ORTHO05D003592 8.0e-10 67.4 54 61.1
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 8.0e-10 67.4 62 56.5
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 8.0e-10 67.4 63 57.1
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 8.0e-10 67.4 63 55.6
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 1.0e-09 67.0 63 57.1
BcaC05g24904 Brassica carinata HOM05D002502 ORTHO05D003592 1.0e-09 67.0 69 53.6
BolC5t29592H Brassica oleracea HOM05D002502 ORTHO05D003592 1.0e-09 67.0 69 53.6
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 1.0e-09 67.0 62 58.1
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 1.0e-09 67.0 68 55.9
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 1.0e-09 67.0 86 46.5
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 1.0e-09 67.0 61 55.7
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 1.0e-09 67.0 61 57.4
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 1.4e-09 66.6 59 61.0
Ca_01773_v3 Cicer arietinum L. HOM05D002502 ORTHO05D017711 1.4e-09 66.6 89 47.2
Os06g0195900 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 1.4e-09 66.6 63 58.7
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 1.8e-09 66.2 63 57.1
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 1.8e-09 66.2 63 55.6
TPR.G36771 Trifolium pratense HOM05D002502 ORTHO05D017711 1.8e-09 66.2 83 49.4
Zm00001eb278540 Zea mays HOM05D002502 ORTHO05D003592 1.8e-09 66.2 61 55.7
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 2.3e-09 65.9 68 52.9
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 2.3e-09 65.9 63 55.6
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 3.0e-09 65.5 63 55.6
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 4.0e-09 65.1 89 41.6
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 4.0e-09 65.1 63 54.0
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 4.0e-09 65.1 59 57.6
Cc00_g01510 Coffea canephora HOM05D002502 ORTHO05D003592 4.0e-09 65.1 54 59.3
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 5.2e-09 64.7 89 44.9
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 5.2e-09 64.7 90 45.6
Nitab4.5_0009394g0010 Nicotiana tabacum HOM05D002502 ORTHO05D003592 5.2e-09 64.7 64 56.2
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 5.2e-09 64.7 63 58.7
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 5.2e-09 64.7 67 53.7
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 6.8e-09 64.3 63 52.4
Os07g0110200 Oryza sativa ssp. japonica HOM05D002502 ORTHO05D003592 6.8e-09 64.3 63 57.1
PGSC0003DMG400030186 Solanum tuberosum HOM05D002502 ORTHO05D017711 6.8e-09 64.3 63 57.1
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 6.8e-09 64.3 91 48.4
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 8.8e-09 63.9 61 57.4
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 8.8e-09 63.9 63 54.0
TAR365G0446 Trochodendron aralioides HOM05D002502 ORTHO05D003592 8.8e-09 63.9 53 60.4
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 1.2e-08 63.5 68 51.5
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 1.2e-08 63.5 91 44.0
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 1.2e-08 63.5 89 46.1
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 1.2e-08 63.5 102 40.2
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 2.0e-08 62.8 61 55.7
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 2.0e-08 62.8 59 55.9
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 2.0e-08 62.8 53 58.5
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 2.6e-08 62.4 93 46.2
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 2.6e-08 62.4 54 59.3
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 2.6e-08 62.4 60 55.0
PSO478G3145 Papaver somniferum HOM05D002502 ORTHO05D003592 3.4e-08 62.0 70 50.0
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 4.4e-08 61.6 91 44.0
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 4.4e-08 61.6 93 44.1
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 4.4e-08 61.6 90 44.4
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 5.7e-08 61.2 60 56.7
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 5.7e-08 61.2 65 52.3
Aa31LG1G8620 Aethionema arabicum HOM05D002502 ORTHO05D003592 9.8e-08 60.5 69 50.7
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 9.8e-08 60.5 59 55.9
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 9.8e-08 60.5 59 55.9
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 9.8e-08 60.5 59 55.9
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 9.8e-08 60.5 59 55.9
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 9.8e-08 60.5 59 55.9
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 9.8e-08 60.5 60 56.7
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 1.3e-07 60.1 69 52.2
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 1.3e-07 60.1 69 52.2
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 1.3e-07 60.1 69 52.2
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 1.3e-07 60.1 69 52.2
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 1.3e-07 60.1 90 43.3
CARHR010410 Cardamine hirsuta HOM05D002502 ORTHO05D003592 1.3e-07 60.1 45 66.7
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 1.3e-07 60.1 68 51.5
Oeu028550.1 Olea europaea HOM05D002502 ORTHO05D003592 1.3e-07 60.1 53 54.7
RcHm_v2.0_Chr5g0051921 Rosa chinensis HOM05D002502 ORTHO05D003592 1.7e-07 59.7 38 76.3
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 2.2e-07 59.3 84 45.2
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 2.8e-07 58.9 51 56.9
BraA06t23215Z Brassica rapa HOM05D002502 ORTHO05D017711 3.7e-07 58.5 91 45.1
SMO147G0287 Selaginella moellendorffii HOM05D002502 ORTHO05D003592 4.8e-07 58.2 53 54.7
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 6.3e-07 57.8 61 52.5
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 6.3e-07 57.8 90 42.2
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 8.3e-07 57.4 58 55.2
Medtr2g082240 Medicago truncatula HOM05D002502 ORTHO05D017711 1.1e-06 57.0 84 42.9
Haze_26385 Corylus avellana HOM05D002502 ORTHO05D003592 1.4e-06 56.6 45 55.6
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 1.8e-06 56.2 82 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis HOM05D002502 ORTHO05D003592 2.4e-06 55.8 53 54.7
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 3.1e-06 55.5 53 56.6
CBR_g77869 Chara braunii HOM05D002502 ORTHO05D003592 9.1e-06 53.9 85 45.9


User provided reference genes

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