Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 7.4e-214 746.9 368 100.0
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 2.3e-154 549.3 331 80.7
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.3e-154 549.3 335 80.0
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.1e-153 547.0 341 77.1
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 5.8e-150 534.6 335 77.9
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 4.2e-148 528.5 332 78.0
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 5.4e-148 528.1 333 76.3
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 7.1e-148 527.7 338 76.9
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 7.1e-148 527.7 331 77.3
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 1.2e-147 526.9 328 78.7
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 6.0e-147 524.6 350 74.9
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 6.0e-147 524.6 326 77.3
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 7.8e-147 524.2 324 76.9
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 3.9e-146 521.9 325 77.8
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 6.6e-146 521.2 337 76.0
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 8.7e-146 520.8 325 77.5
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.5e-145 520.0 344 74.4
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 1.5e-145 520.0 323 78.3
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 1.9e-145 519.6 324 79.3
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 2.5e-145 519.2 330 76.7
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 7.3e-145 517.7 324 77.8
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 7.3e-145 517.7 351 74.6
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 9.6e-145 517.3 324 77.8
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 1.6e-144 516.5 325 76.3
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 1.6e-144 516.5 325 76.6
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 2.1e-144 516.2 323 77.1
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 6.2e-144 514.6 321 77.9
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 8.1e-144 514.2 327 77.1
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 8.1e-144 514.2 331 76.4
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 1.1e-143 513.8 333 75.4
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 1.4e-143 513.5 325 76.6
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.4e-143 513.5 328 75.3
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 1.8e-143 513.1 323 78.0
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 1.8e-143 513.1 328 75.3
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 2.4e-143 512.7 320 77.8
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 3.1e-143 512.3 325 76.6
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 4.0e-143 511.9 327 75.8
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 6.9e-143 511.1 334 75.4
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 6.9e-143 511.1 325 77.5
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 9.0e-143 510.8 344 73.8
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 9.0e-143 510.8 344 73.8
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 9.0e-143 510.8 330 76.4
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 9.0e-143 510.8 342 72.5
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 9.0e-143 510.8 329 75.4
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 1.2e-142 510.4 341 73.0
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.2e-142 510.4 335 74.0
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 1.5e-142 510.0 323 77.4
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.5e-142 510.0 321 78.2
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.5e-142 510.0 328 74.7
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 2.0e-142 509.6 327 77.1
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 2.6e-142 509.2 345 71.9
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 3.4e-142 508.8 334 75.7
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 4.5e-142 508.4 332 75.6
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 5.8e-142 508.1 343 73.2
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 5.8e-142 508.1 323 76.8
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 9.9e-142 507.3 320 77.2
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 9.9e-142 507.3 340 73.5
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 1.3e-141 506.9 323 75.9
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 1.7e-141 506.5 331 73.4
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 2.2e-141 506.1 328 75.3
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 3.8e-141 505.4 325 74.8
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 3.8e-141 505.4 340 72.6
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 4.9e-141 505.0 329 76.0
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 6.4e-141 504.6 334 74.9
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 8.4e-141 504.2 325 75.4
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 8.4e-141 504.2 327 75.5
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 1.1e-140 503.8 326 75.5
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.9e-140 503.1 328 74.4
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 4.2e-140 501.9 320 76.2
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 1.2e-139 500.4 333 73.6
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 1.2e-139 500.4 357 70.6
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 2.7e-139 499.2 329 73.3
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 2.7e-139 499.2 331 72.8
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 3.5e-139 498.8 349 72.5
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 4.6e-139 498.4 330 74.2
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 4.6e-139 498.4 324 75.0
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 3.0e-138 495.7 327 74.3
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 3.9e-138 495.4 325 73.8
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 6.7e-138 494.6 334 72.2
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 1.9e-137 493.0 349 70.2
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 2.5e-137 492.7 328 72.3
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 5.6e-137 491.5 324 73.1
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 5.6e-137 491.5 329 72.0
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 9.6e-137 490.7 330 72.4
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 2.4e-135 486.1 329 71.4
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 5.3e-135 485.0 290 80.3
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.2e-134 483.8 328 72.0
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 2.0e-134 483.0 325 72.0
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 3.2e-132 475.7 345 67.5
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 3.2e-132 475.7 346 67.6
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 1.2e-131 473.8 292 79.8
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 2.1e-131 473.0 309 77.0
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 7.9e-131 471.1 322 71.7
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 3.0e-130 469.2 328 71.3
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 2.5e-129 466.1 352 65.1
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 2.4e-127 459.5 292 78.1
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 3.4e-126 455.7 297 76.1
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.3e-125 453.8 291 76.6
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 4.2e-124 448.7 319 71.8
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.2e-118 430.6 257 80.5
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 2.0e-118 429.9 255 81.2
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 2.6e-118 429.5 362 62.7
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 5.9e-118 428.3 257 80.2
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 2.1e-115 419.9 348 62.4
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 3.6e-115 419.1 275 77.1
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 3.3e-113 412.5 260 76.9
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 6.7e-106 388.3 264 72.7
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 9.7e-105 384.4 346 57.2
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 2.2e-104 383.3 327 58.7
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 1.3e-101 374.0 338 56.8
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 2.2e-101 373.2 271 71.2
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 5.5e-100 368.6 228 78.1
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 2.7e-83 313.2 317 53.0
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 5.9e-78 295.4 167 85.6
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 4.2e-76 289.3 208 65.9
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 1.8e-74 283.9 280 56.8
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 7.8e-70 268.5 184 70.7
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 1.2e-65 254.6 212 62.3
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 5.2e-58 229.2 148 74.3
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 8.3e-56 221.9 207 58.9
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 1.1e-52 211.5 324 37.3
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 8.3e-48 195.3 330 40.6
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 4.3e-44 183.0 177 56.5
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 7.3e-44 182.2 362 34.3
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.2e-39 166.8 239 41.0
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 5.1e-37 159.5 116 65.5
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 5.6e-36 156.0 334 33.8
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 6.2e-35 152.5 114 65.8
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 2.4e-34 150.6 232 47.0
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 5.1e-21 106.3 57 89.5
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 4.9e-16 89.7 98 52.0
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 1.6e-14 84.7 45 84.4
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 5.1e-13 79.7 249 29.7
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 9.6e-12 75.5 78 52.6
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 3.7e-11 73.6 55 65.5
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 4.2e-07 60.1 41 73.2
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 7.1e-07 59.3 30 76.7


User provided reference genes

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