Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 3186.4 1579 100.0
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 1469.1 1566 49.9
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 1429.8 1517 50.1
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 1399.4 1560 48.0
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 1379.4 1488 48.3
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 1348.2 1500 48.3
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 1345.9 1571 45.8
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1340.5 1557 46.2
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 1337.8 1503 48.0
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 1336.2 1519 47.5
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 1334.7 1570 46.2
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1331.6 1563 46.1
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 1331.2 1600 45.9
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1331.2 1557 46.1
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1331.2 1571 46.0
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 1327.0 1559 45.9
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 1323.1 1572 46.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 1317.0 1563 46.3
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 1316.2 1570 45.5
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 1315.1 1560 46.3
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 1305.0 1557 45.0
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 1305.0 1499 47.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 1301.2 1487 46.7
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 1295.4 1570 46.1
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1295.4 1494 46.4
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 1286.9 1564 45.2
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 1285.4 1492 45.8
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 1285.0 1561 46.1
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1283.5 1517 45.7
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1282.3 1502 45.5
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1278.5 1517 45.6
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1274.6 1575 44.4
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 1273.8 1496 45.7
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 1270.4 1563 44.7
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 1270.0 1447 46.7
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1264.6 1530 45.0
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1262.3 1591 43.8
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1262.3 1618 43.3
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1260.0 1592 43.6
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1259.6 1531 46.1
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1258.0 1530 45.4
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1256.9 1530 44.8
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 1256.9 1530 44.7
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 1253.0 1500 45.9
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1249.6 1467 46.5
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 1244.2 1560 44.4
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 1243.4 1572 44.3
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 1243.0 1552 44.1
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1242.6 1530 45.2
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 1236.5 1559 42.5
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1235.3 1556 43.6
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 1233.8 1543 43.6
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 1233.8 1511 45.2
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1233.4 1512 45.4
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 1233.0 1533 45.0
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 1230.3 1503 45.6
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 1228.4 1556 43.3
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 1228.0 1502 45.6
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 1226.8 1511 45.2
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 1224.9 1658 42.9
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1224.2 1495 44.7
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 1219.5 1511 44.4
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 1219.1 1558 42.8
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 1214.9 1513 45.3
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 1213.7 1522 44.2
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 1210.3 1497 44.5
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 1210.3 1555 44.3
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 1209.1 1558 43.5
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 1203.0 1557 43.2
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 1201.4 1512 44.1
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 1196.8 1571 42.8
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1196.4 1488 43.5
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 1192.2 1561 43.2
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 1191.0 1508 43.3
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 1186.0 1491 43.0
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 1185.6 1509 43.1
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 1182.9 1515 42.8
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 1182.9 1604 42.1
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1181.0 1530 43.5
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 1176.8 1488 42.8
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 1171.8 1493 42.9
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 1170.2 1489 43.0
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 1169.1 1486 42.5
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 1167.9 1485 42.6
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1167.5 1558 42.2
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 1165.6 1486 43.0
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 1153.7 1512 42.4
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 1147.9 1488 43.1
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 1133.6 1507 41.6
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 1127.5 1554 41.2
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1086.6 1492 40.7
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1084.7 1059 53.0
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 1082.8 1059 53.1
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 9.3e-306 1054.3 1160 49.6
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 4.4e-279 965.7 1525 39.0
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 4.1e-277 959.1 1525 39.3
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 1.3e-254 884.4 1017 47.3
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 3.4e-247 859.8 1231 40.4
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 2.3e-240 837.0 1410 36.3
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 2.0e-215 754.2 1139 40.2
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 3.3e-210 736.9 1061 39.7
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 1.5e-202 711.4 1030 38.3
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 2.1e-196 691.0 1614 31.6
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 8.5e-190 669.1 771 48.5
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 3.7e-185 653.7 604 58.1
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 8.8e-179 632.5 886 40.9
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 6.7e-171 606.3 1176 34.0
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 5.3e-168 596.7 841 39.6
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 2.0e-167 594.7 816 41.4
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 1.8e-152 545.0 520 56.0
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.3e-150 538.9 1545 27.8
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.8e-140 504.6 514 51.0
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 8.0e-140 503.1 764 35.6
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 5.4e-128 463.8 450 56.0
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 3.5e-119 434.5 443 53.3
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 3.5e-119 434.5 443 53.3
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 3.9e-94 351.3 259 65.3
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.5e-90 339.3 523 35.0
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 1.8e-83 315.8 458 42.4
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 9.7e-77 293.5 318 48.4
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.2e-71 276.6 445 38.4
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.4e-67 263.1 475 32.8
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 5.3e-67 261.2 330 45.5
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 5.0e-65 254.6 460 33.3
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 9.4e-64 250.4 403 36.0
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 2.5e-56 225.7 317 41.0
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 3.2e-56 225.3 476 29.8
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 1.6e-50 206.5 347 34.0
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 8.0e-47 194.1 132 68.9
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 2.0e-42 179.5 173 49.1
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 7.7e-42 177.6 152 59.2
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.0e-41 177.2 122 68.9
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.5e-40 172.6 123 67.5
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 1.3e-36 160.2 856 22.3
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.3e-32 145.6 284 35.2
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 1.6e-31 143.3 137 57.7
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.2e-30 138.3 181 42.0
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-29 136.7 110 62.7
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.5e-24 120.2 252 30.2
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 4.7e-23 115.2 110 52.7
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.6e-18 100.1 83 61.4
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.5e-16 93.6 264 26.9
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 2.2e-12 79.7 118 35.6
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 6.0e-10 71.6 134 32.1
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.6e-09 68.2 180 25.6
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 2.8e-07 62.8 64 45.3
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 2.8e-07 62.8 64 45.3


User provided reference genes

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