Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.6e-83 312.0 156 100.0
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.3e-79 299.7 152 98.0
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 4.2e-33 145.2 155 49.0
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.7e-26 123.2 151 47.7
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 1.9e-25 119.8 158 46.2
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 2.5e-25 119.4 136 46.3
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 4.2e-25 118.6 128 50.0
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 4.2e-25 118.6 107 52.3
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 5.5e-25 118.2 153 42.5
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 7.2e-25 117.9 177 40.7
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.6e-24 116.7 104 51.9
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 2.1e-24 116.3 142 42.3
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 2.1e-24 116.3 123 50.4
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 2.1e-24 116.3 109 55.0
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 2.7e-24 115.9 156 48.1
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 3.6e-24 115.5 153 40.5
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 3.6e-24 115.5 150 45.3
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 4.7e-24 115.2 153 41.8
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 4.7e-24 115.2 114 54.4
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 4.7e-24 115.2 124 48.4
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 6.1e-24 114.8 153 43.1
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 6.1e-24 114.8 124 49.2
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 7.9e-24 114.4 146 42.5
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.0e-23 114.0 125 47.2
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.0e-23 114.0 158 40.5
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.0e-23 114.0 158 40.5
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 1.4e-23 113.6 116 47.4
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.8e-23 113.2 154 42.2
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 1.8e-23 113.2 95 53.7
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 1.8e-23 113.2 152 43.4
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 3.0e-23 112.5 101 56.4
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 3.9e-23 112.1 153 41.8
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 6.7e-23 111.3 153 41.8
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 8.8e-23 110.9 101 54.5
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 8.8e-23 110.9 126 44.4
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.1e-22 110.5 147 47.6
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.1e-22 110.5 152 41.4
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.5e-22 110.2 148 43.9
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.5e-22 110.2 152 46.7
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.5e-22 110.2 160 42.5
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 2.0e-22 109.8 125 48.8
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 2.6e-22 109.4 102 51.0
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 2.6e-22 109.4 164 42.7
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.6e-22 109.4 148 41.9
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 3.3e-22 109.0 156 41.7
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 3.3e-22 109.0 156 41.7
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 3.3e-22 109.0 169 39.6
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 3.3e-22 109.0 101 54.5
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 3.3e-22 109.0 155 44.5
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 3.3e-22 109.0 125 44.0
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 3.3e-22 109.0 99 53.5
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 4.4e-22 108.6 148 43.2
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 4.4e-22 108.6 156 41.7
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.4e-22 108.6 101 54.5
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 4.4e-22 108.6 109 48.6
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 5.7e-22 108.2 124 46.8
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 5.7e-22 108.2 153 38.6
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 5.7e-22 108.2 150 43.3
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 5.7e-22 108.2 144 40.3
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 7.4e-22 107.8 125 47.2
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 7.4e-22 107.8 104 51.9
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 7.4e-22 107.8 106 51.9
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 9.7e-22 107.5 151 42.4
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 9.7e-22 107.5 101 54.5
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 9.7e-22 107.5 148 43.2
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 9.7e-22 107.5 156 41.7
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 9.7e-22 107.5 148 45.3
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 9.7e-22 107.5 136 47.1
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 1.3e-21 107.1 144 41.0
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-21 107.1 151 43.0
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 1.3e-21 107.1 151 43.0
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 1.3e-21 107.1 109 50.5
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 1.7e-21 106.7 106 49.1
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 1.7e-21 106.7 165 40.6
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 2.2e-21 106.3 164 40.2
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 2.2e-21 106.3 164 40.2
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.2e-21 106.3 153 43.8
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.2e-21 106.3 153 43.8
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 2.2e-21 106.3 123 46.3
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 2.2e-21 106.3 137 46.7
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.2e-21 106.3 106 50.0
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 2.8e-21 105.9 144 43.1
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 2.8e-21 105.9 151 44.4
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.7e-21 105.5 106 51.9
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 3.7e-21 105.5 169 42.0
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 4.8e-21 105.1 158 39.9
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 6.3e-21 104.8 108 49.1
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 8.2e-21 104.4 160 37.5
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 8.2e-21 104.4 148 44.6
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.1e-20 104.0 163 38.0
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 1.4e-20 103.6 156 41.0
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.8e-20 103.2 163 37.4
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 1.8e-20 103.2 120 45.8
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 2.4e-20 102.8 140 42.9
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 2.4e-20 102.8 135 45.2
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 2.4e-20 102.8 150 39.3
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 2.4e-20 102.8 111 49.5
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 3.1e-20 102.4 124 46.0
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 3.1e-20 102.4 163 36.8
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 3.1e-20 102.4 111 49.5
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 4.1e-20 102.1 124 46.8
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 4.1e-20 102.1 141 43.3
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 4.1e-20 102.1 101 50.5
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 4.1e-20 102.1 158 37.3
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 5.3e-20 101.7 121 47.1
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 5.3e-20 101.7 108 47.2
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 7.0e-20 101.3 157 38.2
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 7.0e-20 101.3 166 41.0
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 9.1e-20 100.9 106 48.1
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 9.1e-20 100.9 154 43.5
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 9.1e-20 100.9 154 43.5
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 9.1e-20 100.9 100 44.0
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 1.5e-19 100.1 144 41.7
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.5e-19 100.1 106 46.2
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.5e-19 100.1 157 38.2
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.5e-19 100.1 105 46.7
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 2.0e-19 99.8 107 51.4
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 2.0e-19 99.8 107 45.8
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 2.6e-19 99.4 105 51.4
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 4.5e-19 98.6 113 43.4
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 7.7e-19 97.8 152 41.4
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 1.3e-18 97.1 164 36.0
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 1.3e-18 97.1 132 43.2
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 1.7e-18 96.7 168 39.3
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 2.9e-18 95.9 152 38.2
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 2.9e-18 95.9 152 41.4
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 5.0e-18 95.1 168 36.9
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 5.0e-18 95.1 131 43.5
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 8.5e-18 94.4 104 47.1
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.4e-17 93.6 107 48.6
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 5.5e-17 91.7 123 43.1
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.1e-16 89.7 156 39.7
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 3.9e-15 85.5 121 43.8
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 5.2e-15 85.1 102 46.1
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.4e-12 77.0 107 37.4
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 3.1e-12 75.9 64 54.7
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 3.1e-12 75.9 99 38.4
AagrBONN_evm.TU.Sc2ySwM_368.3218 Anthoceros agrestis HOM05D004833 ORTHO05D005671 4.5e-11 72.0 114 35.1
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 1.0e-10 70.9 102 33.3
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 3.6e-08 62.4 118 31.4
CBR_g40443 Chara braunii HOM05D000019 ORTHO05D000002 6.1e-08 61.6 87 37.9
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 6.1e-08 61.6 50 54.0
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 1.0e-07 60.8 113 30.1
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 5.2e-07 58.5 132 35.6
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 8.8e-07 57.8 41 68.3
Pp3c22_2480 Physcomitrium patens HOM05D004938 ORTHO05D006035 1.2e-06 57.4 121 28.9
Actinidia23495 Actinidia chinensis HOM05D004938 ORTHO05D006035 1.5e-06 57.0 121 32.2
Mapoly0156s0019 Marchantia polymorpha HOM05D004938 ORTHO05D006035 1.5e-06 57.0 117 28.2
SMO119G0313 Selaginella moellendorffii HOM05D004938 ORTHO05D006035 2.0e-06 56.6 88 36.4
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 2.6e-06 56.2 78 39.7
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 3.3e-06 55.8 116 33.6
TAR633G0197 Trochodendron aralioides HOM05D004938 ORTHO05D006035 3.3e-06 55.8 116 32.8
Os07g0211400 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 4.4e-06 55.5 115 32.2
AagrBONN_evm.TU.Sc2ySwM_368.1070 Anthoceros agrestis HOM05D004938 ORTHO05D006035 5.7e-06 55.1 114 28.1
Os03g0809700 Oryza sativa ssp. japonica HOM05D004938 ORTHO05D006035 5.7e-06 55.1 97 33.0
Ciclev10004613m.g Citrus clementina HOM05D004938 ORTHO05D006035 9.7e-06 54.3 123 28.5


User provided reference genes

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