Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 0.0e+00 1684.8 838 100.0
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 4.1e-191 672.5 680 52.8
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 2.3e-186 656.8 665 52.5
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 5.9e-182 642.1 685 51.2
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 2.9e-181 639.8 709 49.6
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 3.8e-181 639.4 671 51.1
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.1e-180 637.9 684 50.9
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 5.5e-180 635.6 676 50.3
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.2e-179 634.4 674 51.3
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 1.2e-179 634.4 736 48.6
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.2e-179 634.4 618 52.4
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 1.6e-179 634.0 793 46.8
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 2.7e-179 633.3 732 49.9
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 7.9e-179 631.7 684 51.3
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 5.1e-178 629.0 657 51.3
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.5e-177 627.5 669 50.2
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 3.3e-177 626.3 657 51.1
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.1e-175 621.3 615 52.5
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.8e-175 620.5 629 52.3
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 7.0e-175 618.6 828 45.9
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 7.7e-174 615.1 614 52.9
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 1.7e-173 614.0 629 53.7
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 3.8e-173 612.8 685 48.2
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 5.0e-173 612.5 676 50.0
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 5.0e-173 612.5 654 50.0
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 6.5e-173 612.1 682 49.4
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 6.5e-173 612.1 670 48.5
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.1e-172 611.3 686 49.1
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 1.1e-172 611.3 679 48.6
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 4.2e-172 609.4 657 50.2
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 4.2e-172 609.4 657 50.2
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 9.4e-172 608.2 752 47.3
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.2e-171 607.8 681 48.2
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 1.2e-171 607.8 657 49.9
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 2.7e-171 606.7 663 49.6
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 3.6e-171 606.3 895 41.7
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 4.7e-171 605.9 618 51.8
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.7e-171 605.9 687 48.8
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 4.7e-171 605.9 658 48.9
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 2.3e-170 603.6 708 47.2
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 3.0e-170 603.2 688 48.7
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 4.0e-170 602.8 611 50.4
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.1e-169 601.3 686 47.4
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 2.0e-169 600.5 663 48.6
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 2.6e-169 600.1 836 42.6
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 3.3e-169 599.7 691 47.5
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 7.5e-169 598.6 823 43.1
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 9.7e-169 598.2 694 48.4
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 9.7e-169 598.2 658 49.1
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.7e-168 597.4 617 51.1
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 2.8e-168 596.7 655 49.3
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 2.8e-168 596.7 657 48.9
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 3.7e-168 596.3 865 41.8
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 3.7e-168 596.3 827 42.8
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 6.3e-168 595.5 675 49.0
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 3.1e-167 593.2 606 50.0
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 1.2e-166 591.3 672 50.3
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 2.0e-166 590.5 681 48.9
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.0e-166 590.5 739 46.3
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.5e-166 589.7 671 48.0
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.0e-165 588.2 699 48.2
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 2.2e-165 587.0 553 53.3
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.8e-165 586.3 671 48.4
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 3.8e-165 586.3 740 46.1
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.1e-164 584.7 666 48.8
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 7.2e-164 582.0 670 48.2
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 9.4e-164 581.6 724 44.8
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 1.2e-163 581.3 722 44.5
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 1.2e-163 581.3 729 45.0
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 2.1e-163 580.5 618 49.7
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 4.7e-163 579.3 626 49.4
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 6.1e-163 578.9 685 48.3
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 8.0e-163 578.6 620 49.5
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 3.0e-162 576.6 853 41.7
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 4.0e-162 576.2 726 43.8
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 4.0e-162 576.2 720 44.0
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 4.0e-162 576.2 719 45.1
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 4.0e-162 576.2 718 46.2
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.2e-161 574.7 690 48.0
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 2.0e-161 573.9 609 50.1
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 2.6e-161 573.5 705 46.5
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 5.7e-161 572.4 672 48.1
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 3.7e-160 569.7 713 45.9
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 3.7e-160 569.7 612 49.7
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 4.8e-160 569.3 615 50.1
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 6.3e-160 568.9 725 44.0
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 1.8e-159 567.4 726 44.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 2.0e-158 563.9 691 47.8
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 2.0e-158 563.9 828 42.3
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 7.7e-158 562.0 863 40.4
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 1.9e-156 557.4 718 45.5
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 5.5e-156 555.8 745 43.1
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 5.5e-156 555.8 746 42.9
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.7e-155 553.5 736 44.8
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 8.8e-154 548.5 721 43.1
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 1.5e-153 547.7 668 44.3
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 7.5e-153 545.4 720 44.6
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 7.5e-153 545.4 612 47.5
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 2.2e-152 543.9 661 48.1
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.1e-151 541.6 547 52.3
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.3e-149 534.6 670 44.8
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 3.0e-146 523.5 665 44.5
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 5.2e-146 522.7 735 42.2
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 9.8e-145 518.5 647 44.7
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 1.3e-144 518.1 701 41.9
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 6.2e-139 499.2 620 44.8
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 4.1e-135 486.5 571 48.9
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 2.5e-132 477.2 618 44.0
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.2e-131 474.9 683 40.6
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 2.3e-130 470.7 665 41.1
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 2.9e-128 463.8 648 42.1
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 7.6e-121 439.1 612 42.3
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 5.1e-117 426.4 611 40.3
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.1e-116 425.2 655 40.5
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.1e-116 425.2 562 41.3
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 3.4e-113 413.7 371 56.9
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.6e-110 404.8 523 42.8
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 4.9e-104 383.3 357 54.9
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 8.4e-104 382.5 647 38.8
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 2.1e-94 351.3 495 40.6
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.3e-91 342.0 579 38.7
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.2e-86 325.5 595 37.6
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 6.9e-82 309.7 610 33.6
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 9.0e-82 309.3 615 30.1
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 5.0e-80 303.5 291 53.6
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 7.7e-57 226.5 311 43.4
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.0e-56 226.1 307 45.0
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 8.8e-53 213.0 325 41.2
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 5.0e-48 197.2 184 55.4
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 9.4e-47 193.0 170 57.1
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 2.6e-44 184.9 357 34.5
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 7.0e-42 176.8 177 54.8
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 4.7e-38 164.1 193 43.0
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 5.2e-37 160.6 115 67.8
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 5.4e-34 150.6 124 62.1
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.8e-32 144.4 116 61.2
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 9.8e-28 129.8 517 25.7
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 1.7e-27 129.0 319 32.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.1e-26 126.3 194 41.2
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 2.5e-23 115.2 78 73.1
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.6e-17 94.4 71 67.6
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 3.9e-16 91.3 74 62.2
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 8.6e-16 90.1 75 57.3
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.1e-15 89.7 586 22.7
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 1.5e-15 89.4 192 34.4
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 4.0e-13 81.3 75 56.0
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.4e-11 73.9 42 78.6
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 1.3e-08 66.2 49 61.2
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 4.3e-07 61.2 72 40.3
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 4.7e-06 57.8 228 24.6


User provided reference genes

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