Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001941 Vanilla planifolia HOM05D004458 ORTHO05D005455 2.8e-64 248.4 124 100.0
Sabra10G0115700 Salix brachista HOM05D004458 ORTHO05D005455 2.2e-29 132.5 121 57.9
Nitab4.5_0000186g0060 Nicotiana tabacum HOM05D004458 ORTHO05D005455 5.0e-29 131.3 141 52.5
Nitab4.5_0004298g0040 Nicotiana tabacum HOM05D004458 ORTHO05D005455 1.5e-28 129.8 141 51.8
MSTRG.24833 Avicennia marina HOM05D004458 ORTHO05D005455 2.5e-28 129.0 141 52.5
MELO3C006733.2 Cucumis melo HOM05D004458 ORTHO05D005455 4.2e-28 128.3 141 53.2
CsaV3_3G015350 Cucumis sativus L. HOM05D004458 ORTHO05D005455 4.2e-28 128.3 141 53.2
ClCG05G006720 Citrullus lanatus HOM05D004458 ORTHO05D005455 9.4e-28 127.1 141 52.5
Solyc01g057830.3 Solanum lycopersicum HOM05D004458 ORTHO05D005455 9.4e-28 127.1 141 49.6
Sopen01g023160 Solanum pennellii HOM05D004458 ORTHO05D005455 9.4e-28 127.1 141 49.6
PGSC0003DMG400001233 Solanum tuberosum HOM05D004458 ORTHO05D005455 9.4e-28 127.1 141 49.6
HanXRQChr11g0353951 Helianthus annuus HOM05D004458 ORTHO05D005455 1.6e-27 126.3 141 51.8
MBI19_g32690_MAGBIO Magnolia biondii HOM05D004458 ORTHO05D005455 2.1e-27 125.9 141 50.4
Migut.G00023 Erythranthe guttata HOM05D004458 ORTHO05D005455 2.7e-27 125.6 141 51.8
Sed0009218 Sechium edule HOM05D004458 ORTHO05D005455 2.7e-27 125.6 141 51.1
CAN.G14.37 Capsicum annuum HOM05D004458 ORTHO05D005455 3.6e-27 125.2 141 48.9
Cc03_g00460 Coffea canephora HOM05D004458 ORTHO05D005455 3.6e-27 125.2 141 49.6
PGSC0003DMG400004609 Solanum tuberosum HOM05D004458 ORTHO05D005455 4.7e-27 124.8 140 50.0
MSTRG.10175 Avicennia marina HOM05D004458 ORTHO05D005455 6.1e-27 124.4 141 51.8
Lsat_1_v5_gn_6_69461 Lactuca sativa HOM05D004458 ORTHO05D005455 8.0e-27 124.0 141 49.6
Solyc12g099110.2 Solanum lycopersicum HOM05D004458 ORTHO05D005455 8.0e-27 124.0 140 50.0
Sopen12g033820 Solanum pennellii HOM05D004458 ORTHO05D005455 8.0e-27 124.0 140 50.0
Manes.15G003100 Manihot esculenta HOM05D004458 ORTHO05D005455 1.4e-26 123.2 141 50.4
Ah.07g203910 Amaranthus hybridus HOM05D004458 ORTHO05D005455 1.8e-26 122.9 142 47.9
CAN.G484.78 Capsicum annuum HOM05D004458 ORTHO05D005455 1.8e-26 122.9 140 49.3
CDE11G1204 Ceratophyllum demersum HOM05D004458 ORTHO05D005455 1.8e-26 122.9 143 49.7
Dinv15126 Davidia involucrata HOM05D004458 ORTHO05D005455 1.8e-26 122.9 141 49.6
Hma1.2p1_1096F.1_g256640 Hydrangea macrophylla HOM05D004458 ORTHO05D005455 1.8e-26 122.9 141 51.8
Potri.010G150300 Populus trichocarpa HOM05D004458 ORTHO05D005455 1.8e-26 122.9 141 49.6
TWI09G1490 Tripterygium wilfordii HOM05D004458 ORTHO05D005455 1.8e-26 122.9 141 49.6
PSO210G2951 Papaver somniferum HOM05D004458 ORTHO05D005455 2.3e-26 122.5 141 48.9
PSO761G0404 Papaver somniferum HOM05D004458 ORTHO05D005455 2.3e-26 122.5 141 48.9
QL06p013334 Quercus lobata HOM05D004458 ORTHO05D005455 2.3e-26 122.5 142 50.0
Lsat_1_v5_gn_1_40241 Lactuca sativa HOM05D004458 ORTHO05D005455 3.0e-26 122.1 141 48.9
TWI53G1192 Tripterygium wilfordii HOM05D004458 ORTHO05D005455 3.0e-26 122.1 141 49.6
CANSAT78G1602 Cannabis sativa HOM05D004458 ORTHO05D005455 4.0e-26 121.7 141 50.4
Gohir.A02G056300 Gossypium hirsutum HOM05D004458 ORTHO05D005455 4.0e-26 121.7 144 50.0
MD13G1147900 Malus domestica HOM05D004458 ORTHO05D005455 4.0e-26 121.7 141 50.4
MD16G1147700 Malus domestica HOM05D004458 ORTHO05D005455 4.0e-26 121.7 141 50.4
Nn3g21829 Nelumbo nucifera HOM05D004458 ORTHO05D005455 5.2e-26 121.3 141 49.6
TAR362G1183 Trochodendron aralioides HOM05D004458 ORTHO05D005455 5.2e-26 121.3 141 49.6
Actinidia18482 Actinidia chinensis HOM05D004458 ORTHO05D005455 6.7e-26 120.9 141 48.9
Gohir.D02G061500 Gossypium hirsutum HOM05D004458 ORTHO05D005455 6.7e-26 120.9 141 50.4
Gorai.005G069200 Gossypium raimondii HOM05D004458 ORTHO05D005455 6.7e-26 120.9 141 50.4
Potri.008G101100 Populus trichocarpa HOM05D004458 ORTHO05D005455 8.8e-26 120.6 141 48.2
Sabra08G0076400 Salix brachista HOM05D004458 ORTHO05D005455 8.8e-26 120.6 141 48.9
arahy.Tifrunner.gnm1.ann1.2F4DQW Arachis hypogaea HOM05D004458 ORTHO05D005455 1.1e-25 120.2 141 48.2
arahy.Tifrunner.gnm1.ann1.NS41IF Arachis hypogaea HOM05D004458 ORTHO05D005455 1.1e-25 120.2 141 48.2
EL10Ac3g06292 Beta vulgaris HOM05D004458 ORTHO05D005455 1.1e-25 120.2 141 48.2
Thecc.04G307500 Theobroma cacao HOM05D004458 ORTHO05D005455 1.1e-25 120.2 141 50.4
Atru.chr4.3103 Acer truncatum HOM05D004458 ORTHO05D005455 1.5e-25 119.8 141 49.6
ATR0693G312 Amborella trichopoda HOM05D004458 ORTHO05D005455 1.5e-25 119.8 141 48.9
Cfa015690 Carpinus fangiana HOM05D004458 ORTHO05D005455 1.5e-25 119.8 141 49.6
CiPaw.01G133400 Carya illinoinensis HOM05D004458 ORTHO05D005455 1.5e-25 119.8 141 50.4
Eucgr.H04084 Eucalyptus grandis HOM05D004458 ORTHO05D005455 1.5e-25 119.8 141 49.6
Aqoxy2G02626 Aquilegia oxysepala HOM05D004458 ORTHO05D005455 2.0e-25 119.4 142 49.3
CDE05G1409 Ceratophyllum demersum HOM05D004458 ORTHO05D005455 2.0e-25 119.4 144 47.2
Dinv44245 Davidia involucrata HOM05D004458 ORTHO05D005455 2.0e-25 119.4 141 48.9
ECA233G6062 Erigeron canadensis HOM05D004458 ORTHO05D005455 2.0e-25 119.4 141 47.5
Duzib212G0400 Durio zibethinus HOM05D004458 ORTHO05D005455 2.6e-25 119.0 141 48.2
VMungo1215G2486 Vigna mungo HOM05D004458 ORTHO05D005455 2.6e-25 119.0 141 48.2
Actinidia31582 Actinidia chinensis HOM05D004458 ORTHO05D005455 3.3e-25 118.6 141 48.2
CSS0034217 Camellia sinensis var. sinensis HOM05D004458 ORTHO05D005455 4.4e-25 118.2 142 47.2
AUR62002594 Chenopodium quinoa HOM05D004458 ORTHO05D005455 5.7e-25 117.9 141 46.8
AUR62030017 Chenopodium quinoa HOM05D004458 ORTHO05D005455 5.7e-25 117.9 141 46.8
Prupe.1G111400 Prunus persica HOM05D004458 ORTHO05D005455 5.7e-25 117.9 141 48.9
Sc25g0001600 Simmondsia chinensis HOM05D004458 ORTHO05D005455 5.7e-25 117.9 141 48.2
Phvul.003G118600 Phaseolus vulgaris HOM05D004458 ORTHO05D005455 7.5e-25 117.5 141 47.5
unitig_22.g6348 Utricularia gibba HOM05D004458 ORTHO05D005455 7.5e-25 117.5 142 47.9
CiPaw.02G072000 Carya illinoinensis HOM05D004458 ORTHO05D005455 9.7e-25 117.1 141 49.6
Ciclev10005364m.g Citrus clementina HOM05D004458 ORTHO05D005455 1.3e-24 116.7 141 48.9
unitig_8.g3100 Utricularia gibba HOM05D004458 ORTHO05D005455 1.3e-24 116.7 141 48.2
SalBow8G3582 Salvia bowleyana HOM05D004458 ORTHO05D005455 1.7e-24 116.3 141 48.2
THA.LOC104818863 Tarenaya hassleriana HOM05D004458 ORTHO05D005455 1.7e-24 116.3 144 47.2
GSVIVG01034940001 Vitis vinifera HOM05D004458 ORTHO05D005455 2.2e-24 115.9 141 48.2
TAR636G0490 Trochodendron aralioides HOM05D004458 ORTHO05D005455 2.8e-24 115.5 144 45.8
BcaB04g19641 Brassica carinata HOM05D004458 ORTHO05D005455 3.7e-24 115.2 144 46.5
BcaC04g23713 Brassica carinata HOM05D004458 ORTHO05D005455 3.7e-24 115.2 144 46.5
C09p05470 Brassica napus HOM05D004458 ORTHO05D005455 3.7e-24 115.2 144 46.5
BolC9t53476H Brassica oleracea HOM05D004458 ORTHO05D005455 3.7e-24 115.2 144 46.5
Carub.0020s0005 Capsella rubella HOM05D004458 ORTHO05D005455 3.7e-24 115.2 144 45.8
Cpa.g.sc146.69 Carica papaya HOM05D004458 ORTHO05D005455 3.7e-24 115.2 141 46.1
COL.COLO4_34557 Corchorus olitorius HOM05D004458 ORTHO05D005455 3.7e-24 115.2 141 47.5
AT5G30510 Arabidopsis thaliana HOM05D004458 ORTHO05D005455 4.8e-24 114.8 144 45.8
BcaNung02119 Brassica carinata HOM05D004458 ORTHO05D005455 4.8e-24 114.8 144 45.8
A06p38180 Brassica napus HOM05D004458 ORTHO05D005455 4.8e-24 114.8 144 45.8
A09p05060 Brassica napus HOM05D004458 ORTHO05D005455 4.8e-24 114.8 144 45.8
C07p40030 Brassica napus HOM05D004458 ORTHO05D005455 4.8e-24 114.8 144 45.8
BolC7t44537H Brassica oleracea HOM05D004458 ORTHO05D005455 4.8e-24 114.8 144 45.8
BraA06t26733Z Brassica rapa HOM05D004458 ORTHO05D005455 4.8e-24 114.8 144 45.8
BraA09t36145Z Brassica rapa HOM05D004458 ORTHO05D005455 4.8e-24 114.8 144 45.8
Glyma.17G037700 Glycine max HOM05D004458 ORTHO05D005455 4.8e-24 114.8 141 46.1
PGR004G0801 Punica granatum HOM05D004458 ORTHO05D005455 4.8e-24 114.8 141 46.8
Sed0001457 Sechium edule HOM05D004458 ORTHO05D005455 4.8e-24 114.8 121 55.4
BcaC06g30694 Brassica carinata HOM05D004458 ORTHO05D005455 6.3e-24 114.4 144 46.5
DCAR_023377 Daucus carota HOM05D004458 ORTHO05D005455 6.3e-24 114.4 141 46.8
CARHR185550 Cardamine hirsuta HOM05D004458 ORTHO05D005455 1.1e-23 113.6 144 45.1
Sed0000500 Sechium edule HOM05D004458 ORTHO05D005455 1.1e-23 113.6 141 46.8
AL6G41130 Arabidopsis lyrata HOM05D004458 ORTHO05D005455 1.4e-23 113.2 144 45.1
ClCG08G002550 Citrullus lanatus HOM05D004458 ORTHO05D005455 1.4e-23 113.2 141 47.5
Thhalv10004302m.g Eutrema salsugineum HOM05D004458 ORTHO05D005455 1.4e-23 113.2 144 45.1
Sp2g19940 Schrenkiella parvula HOM05D004458 ORTHO05D005455 1.4e-23 113.2 144 45.1
MELO3C025002.2 Cucumis melo HOM05D004458 ORTHO05D005455 1.8e-23 112.8 141 46.1
VMungo0540G1791 Vigna mungo HOM05D004458 ORTHO05D005455 1.8e-23 112.8 141 47.5
Phvul.006G121100 Phaseolus vulgaris HOM05D004458 ORTHO05D005455 1.2e-22 110.2 141 46.1
Aa31LG11G8410 Aethionema arabicum HOM05D004458 ORTHO05D005455 1.6e-22 109.8 144 43.8
arahy.Tifrunner.gnm1.ann1.C83F23 Arachis hypogaea HOM05D004458 ORTHO05D005455 1.6e-22 109.8 141 44.0
arahy.Tifrunner.gnm1.ann1.G3761Q Arachis hypogaea HOM05D004458 ORTHO05D005455 1.6e-22 109.8 141 44.0
arahy.Tifrunner.gnm1.ann1.QN1HMQ Arachis hypogaea HOM05D004458 ORTHO05D005455 1.6e-22 109.8 141 44.0
ClCG06G004350 Citrullus lanatus HOM05D004458 ORTHO05D005455 1.6e-22 109.8 141 45.4
Lalb_Chr20g0120631 Lupinus albus HOM05D004458 ORTHO05D005455 1.6e-22 109.8 141 44.7
Lj6g0001722 Lotus japonicus HOM05D004458 ORTHO05D005455 3.5e-22 108.6 141 46.8
Lalb_Chr15g0089031 Lupinus albus HOM05D004458 ORTHO05D005455 4.5e-22 108.2 141 44.0
Ca_00945_v3 Cicer arietinum L. HOM05D004458 ORTHO05D005455 1.0e-21 107.1 141 43.3
FvH4_4g20780 Fragaria vesca HOM05D004458 ORTHO05D005455 1.3e-21 106.7 141 43.3
FAN07G1987 Fragaria x ananassa HOM05D004458 ORTHO05D005455 1.3e-21 106.7 141 43.3
FAN12G4036 Fragaria x ananassa HOM05D004458 ORTHO05D005455 1.3e-21 106.7 141 43.3
FAN17G0333 Fragaria x ananassa HOM05D004458 ORTHO05D005455 1.3e-21 106.7 141 43.3
Medtr2g033020 Medicago truncatula HOM05D004458 ORTHO05D005455 1.3e-21 106.7 141 44.7
RcHm_v2.0_Chr4g0426221 Rosa chinensis HOM05D004458 ORTHO05D005455 1.3e-21 106.7 141 43.3
Glyma.09G031800 Glycine max HOM05D004458 ORTHO05D005455 2.2e-21 105.9 141 45.4
Glyma.15G136800 Glycine max HOM05D004458 ORTHO05D005455 2.9e-21 105.5 141 44.7
Sed0002093 Sechium edule HOM05D004458 ORTHO05D005455 6.5e-21 104.4 142 44.4
arahy.Tifrunner.gnm1.ann1.PZ9WPP Arachis hypogaea HOM05D004458 ORTHO05D005455 4.2e-20 101.7 151 41.1
TPR.G10105 Trifolium pratense HOM05D004458 ORTHO05D005455 1.2e-19 100.1 140 41.4
vmacro07975 Vaccinium macrocarpon HOM05D004458 ORTHO05D005455 1.2e-19 100.1 140 40.0
Lalb_Chr07g0181881 Lupinus albus HOM05D004458 ORTHO05D005455 1.6e-19 99.8 141 42.6
Psat1g162760 Pisum sativum HOM05D004458 ORTHO05D005455 1.6e-19 99.8 141 40.4
Hund12232 Selenicereus undatus HOM05D004458 ORTHO05D005455 2.7e-19 99.0 137 40.1
Mapoly0018s0004 Marchantia polymorpha HOM05D004458 ORTHO05D005455 4.7e-19 98.2 141 44.0
AagrBONN_evm.TU.Sc2ySwM_368.2766 Anthoceros agrestis HOM05D004458 ORTHO05D005455 8.0e-19 97.4 142 38.7
Ca_00951_v3 Cicer arietinum L. HOM05D004458 ORTHO05D005455 1.4e-18 96.7 141 41.8
Os03g0315800 Oryza sativa ssp. japonica HOM05D004458 ORTHO05D005455 5.2e-18 94.7 141 41.8
Peaxi162Scf00126g01416 Petunia axillaris HOM05D004458 ORTHO05D005455 6.8e-18 94.4 119 48.7
SGA_v2.0_scaffold157G37359 Striga asiatica HOM05D004458 ORTHO05D005455 1.5e-17 93.2 167 37.7
Zm00001eb395590 Zea mays HOM05D004458 ORTHO05D005455 3.4e-17 92.0 141 41.1
unitig_8.g3099 Utricularia gibba HOM05D004458 ORTHO05D005455 4.4e-17 91.7 121 44.6
Rhsim04G0243100 Rhododendron simsii HOM05D004458 ORTHO05D005455 1.3e-16 90.1 173 35.8
Pp3c20_22450 Physcomitrium patens HOM05D004458 ORTHO05D005455 2.8e-16 89.0 141 40.4
Haze_00830 Corylus avellana HOM05D004458 ORTHO05D005455 3.7e-16 88.6 119 47.1
Pp3c10_21790 Physcomitrium patens HOM05D004458 ORTHO05D005455 4.8e-16 88.2 141 39.7
DCAR_026966 Daucus carota HOM05D004458 ORTHO05D005455 1.4e-15 86.7 119 46.2
DCAR_026969 Daucus carota HOM05D004458 ORTHO05D005455 1.4e-15 86.7 119 46.2
DCAR_002527 Daucus carota HOM05D004458 ORTHO05D005455 9.1e-15 84.0 121 43.8
Duzib052G0436 Durio zibethinus HOM05D004458 ORTHO05D005455 1.2e-14 83.6 116 41.4
Lj3A836T25 Lonicera japonica HOM05D004458 ORTHO05D005455 1.7e-13 79.7 121 42.1
CBR_g34276 Chara braunii HOM05D004458 ORTHO05D005455 2.1e-11 72.8 134 30.6
SMO146G0227 Selaginella moellendorffii HOM05D004458 ORTHO05D005455 2.1e-11 72.8 137 31.4
BcaB07g34167 Brassica carinata HOM05D004458 ORTHO05D005455 2.2e-08 62.8 58 50.0
Sabra06G0166200 Salix brachista HOM05D007555 ORTHO05D009521 3.7e-08 62.0 58 50.0
Cre09.g394750 Chlamydomonas reinhardtii HOM05D004458 ORTHO05D005455 1.8e-07 59.7 130 30.8
PRCOL_00002737 Prasinoderma coloniale HOM05D004458 ORTHO05D005455 5.4e-07 58.2 129 27.1


User provided reference genes

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