Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001808 Vanilla planifolia HOM05D004176 ORTHO05D004845 9.7e-89 330.1 164 100.0
HPP92_014068 Vanilla planifolia HOM05D001107 ORTHO05D004845 2.9e-45 185.7 119 73.1
HPP92_000922 Vanilla planifolia HOM05D004176 ORTHO05D004845 1.0e-42 177.2 111 79.3
ATR0693G103 Amborella trichopoda HOM05D004176 ORTHO05D004845 1.9e-36 156.4 112 64.3
MBI18_g07595_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D004845 3.6e-35 152.1 112 65.2
Aqoxy1G02747 Aquilegia oxysepala HOM05D004176 ORTHO05D004845 2.3e-34 149.4 112 63.4
TAR624G0327 Trochodendron aralioides HOM05D004176 ORTHO05D004845 8.9e-34 147.5 112 65.2
PSO675G5031 Papaver somniferum HOM05D004176 ORTHO05D004845 1.7e-32 143.3 110 60.0
COL.COLO4_31573 Corchorus olitorius HOM05D004176 ORTHO05D004845 2.9e-32 142.5 113 59.3
PGR042G0018 Punica granatum HOM05D004176 ORTHO05D004845 6.4e-32 141.4 113 59.3
Os01g0782200 Oryza sativa ssp. japonica HOM05D004176 ORTHO05D004845 8.3e-32 141.0 114 57.0
Thhalv10025052m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 1.4e-31 140.2 112 62.5
Zm00001eb324260 Zea mays HOM05D004176 ORTHO05D004845 2.4e-31 139.4 114 57.0
Sp7g19660 Schrenkiella parvula HOM05D004176 ORTHO05D004845 4.1e-31 138.7 112 61.6
C07p51250 Brassica napus HOM05D004176 ORTHO05D004845 5.4e-31 138.3 112 61.6
Peaxi162Scf00588g00910 Petunia axillaris HOM05D004176 ORTHO05D004845 5.4e-31 138.3 113 59.3
AL7G32480 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 7.0e-31 137.9 112 61.6
BolC7t45624H Brassica oleracea HOM05D004176 ORTHO05D004845 9.2e-31 137.5 112 60.7
CDE05G1825 Ceratophyllum demersum HOM05D004176 ORTHO05D004845 9.2e-31 137.5 118 55.1
Carub.0007s1987 Capsella rubella HOM05D004176 ORTHO05D004845 1.6e-30 136.7 112 60.7
AT4G21540 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 2.1e-30 136.3 112 60.7
BraA03t14357Z Brassica rapa HOM05D004176 ORTHO05D004845 2.7e-30 136.0 112 60.7
CiPaw.09G158600 Carya illinoinensis HOM05D004176 ORTHO05D004845 2.7e-30 136.0 115 58.3
THA.LOC104806277 Tarenaya hassleriana HOM05D004176 ORTHO05D004845 2.7e-30 136.0 112 62.5
Actinidia05580 Actinidia chinensis HOM05D004176 ORTHO05D004845 4.6e-30 135.2 111 58.6
BcaC06g30667 Brassica carinata HOM05D004176 ORTHO05D004845 4.6e-30 135.2 112 60.7
A08p15120 Brassica napus HOM05D004176 ORTHO05D004845 4.6e-30 135.2 110 62.7
BraA08t33492Z Brassica rapa HOM05D004176 ORTHO05D004845 4.6e-30 135.2 110 62.7
CAN.G1181.22 Capsicum annuum HOM05D004176 ORTHO05D004845 4.6e-30 135.2 113 58.4
CARHR228210 Cardamine hirsuta HOM05D004176 ORTHO05D004845 4.6e-30 135.2 112 59.8
A03p52810 Brassica napus HOM05D004176 ORTHO05D004845 6.0e-30 134.8 112 59.8
Sc05g0008050 Simmondsia chinensis HOM05D004176 ORTHO05D004845 6.0e-30 134.8 113 55.8
Nn1g06749 Nelumbo nucifera HOM05D004176 ORTHO05D004845 7.8e-30 134.4 105 61.9
Thhalv10025046m.g Eutrema salsugineum HOM05D004176 ORTHO05D004845 1.0e-29 134.0 112 59.8
Oeu053937.2 Olea europaea HOM05D004176 ORTHO05D004845 1.0e-29 134.0 113 61.1
Eucgr.E03468 Eucalyptus grandis HOM05D004176 ORTHO05D004845 1.3e-29 133.7 113 59.3
Sc05g0010010 Simmondsia chinensis HOM05D004176 ORTHO05D004845 1.3e-29 133.7 113 55.8
AL7G32490 Arabidopsis lyrata HOM05D004176 ORTHO05D004845 1.7e-29 133.3 112 59.8
BcaB03g11691 Brassica carinata HOM05D004176 ORTHO05D004845 1.7e-29 133.3 110 61.8
Sopen02g023840 Solanum pennellii HOM05D004176 ORTHO05D004845 1.7e-29 133.3 114 57.9
Zm00001eb106910 Zea mays HOM05D004176 ORTHO05D004845 1.7e-29 133.3 115 57.4
TWI63G1567 Tripterygium wilfordii HOM05D004176 ORTHO05D004845 2.3e-29 132.9 113 57.5
CSS0038663 Camellia sinensis var. sinensis HOM05D004176 ORTHO05D004845 3.0e-29 132.5 111 58.6
arahy.Tifrunner.gnm1.ann1.YND711 Arachis hypogaea HOM05D004176 ORTHO05D004845 3.9e-29 132.1 113 57.5
Solyc02g079030.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 5.0e-29 131.7 114 57.0
Haze_06566 Corylus avellana HOM05D004176 ORTHO05D004845 6.6e-29 131.3 113 61.1
Manes.16G021200 Manihot esculenta HOM05D004176 ORTHO05D004845 6.6e-29 131.3 113 57.5
PGSC0003DMG400022361 Solanum tuberosum HOM05D004176 ORTHO05D004845 6.6e-29 131.3 114 57.0
GSVIVG01003211001 Vitis vinifera HOM05D004176 ORTHO05D004845 6.6e-29 131.3 113 56.6
AT4G21534 Arabidopsis thaliana HOM05D004176 ORTHO05D004845 8.6e-29 131.0 112 58.0
Ah.14g088950 Amaranthus hybridus HOM05D004176 ORTHO05D004845 1.1e-28 130.6 113 55.8
CARHR228200 Cardamine hirsuta HOM05D004176 ORTHO05D004845 1.1e-28 130.6 112 58.9
Gohir.D10G021400 Gossypium hirsutum HOM05D004176 ORTHO05D004845 1.5e-28 130.2 112 58.0
Gorai.011G022500 Gossypium raimondii HOM05D004176 ORTHO05D004845 1.5e-28 130.2 112 58.0
Potri.011G043500 Populus trichocarpa HOM05D004176 ORTHO05D004845 1.5e-28 130.2 113 55.8
Sabra11G0030100 Salix brachista HOM05D004176 ORTHO05D004845 1.5e-28 130.2 113 56.6
Sp7g19650 Schrenkiella parvula HOM05D004176 ORTHO05D004845 1.5e-28 130.2 112 60.7
Dinv40500 Davidia involucrata HOM05D004176 ORTHO05D004845 1.9e-28 129.8 113 54.9
Peaxi162Scf00137g00128 Petunia axillaris HOM05D004176 ORTHO05D004845 2.5e-28 129.4 112 56.2
Mapoly0139s0005 Marchantia polymorpha HOM05D004176 ORTHO05D004845 3.3e-28 129.0 112 52.7
Cpa.g.sc1170.1 Carica papaya HOM05D004176 ORTHO05D004845 4.3e-28 128.6 113 54.9
Ciclev10015071m.g Citrus clementina HOM05D004176 ORTHO05D004845 4.3e-28 128.6 113 57.5
FAN21G0123 Fragaria x ananassa HOM05D004176 ORTHO05D004845 5.6e-28 128.3 110 57.3
arahy.Tifrunner.gnm1.ann1.IP4RNA Arachis hypogaea HOM05D004176 ORTHO05D004845 7.3e-28 127.9 113 55.8
BcaC01g00694 Brassica carinata HOM05D004176 ORTHO05D004845 7.3e-28 127.9 110 60.9
BolC3t20608H Brassica oleracea HOM05D004176 ORTHO05D004845 7.3e-28 127.9 110 60.9
Carub.0007s1988 Capsella rubella HOM05D004176 ORTHO05D004845 7.3e-28 127.9 112 56.2
AUR62014726 Chenopodium quinoa HOM05D004176 ORTHO05D004845 7.3e-28 127.9 112 53.6
ClCG01G022660 Citrullus lanatus HOM05D004176 ORTHO05D004845 7.3e-28 127.9 112 54.5
Migut.M01205 Erythranthe guttata HOM05D004176 ORTHO05D004845 7.3e-28 127.9 118 55.9
Solyc03g006630.3 Solanum lycopersicum HOM05D004176 ORTHO05D004845 7.3e-28 127.9 112 56.2
Sopen03g002640 Solanum pennellii HOM05D004176 ORTHO05D004845 7.3e-28 127.9 112 56.2
MSTRG.15928 Avicennia marina HOM05D004176 ORTHO05D004845 9.5e-28 127.5 112 56.2
C03p83270 Brassica napus HOM05D004176 ORTHO05D004845 9.5e-28 127.5 110 60.9
FAN25G2335 Fragaria x ananassa HOM05D004176 ORTHO05D004845 9.5e-28 127.5 110 57.3
Lalb_Chr05g0218191 Lupinus albus HOM05D004176 ORTHO05D004845 9.5e-28 127.5 113 55.8
Gohir.A10G020600 Gossypium hirsutum HOM05D004176 ORTHO05D004845 1.2e-27 127.1 112 57.1
CAN.G289.28 Capsicum annuum HOM05D004176 ORTHO05D004845 1.6e-27 126.7 112 58.0
PGSC0003DMG400005056 Solanum tuberosum HOM05D004176 ORTHO05D004845 1.6e-27 126.7 112 56.2
Duzib235G1328 Durio zibethinus HOM05D004176 ORTHO05D004845 2.1e-27 126.3 113 56.6
MELO3C007311.2 Cucumis melo HOM05D004176 ORTHO05D004845 3.6e-27 125.6 112 53.6
Glyma.15G067800 Glycine max HOM05D004176 ORTHO05D004845 3.6e-27 125.6 113 55.8
Lj6g0015878 Lotus japonicus HOM05D004176 ORTHO05D004845 3.6e-27 125.6 113 55.8
Lalb_Chr18g0059921 Lupinus albus HOM05D004176 ORTHO05D004845 3.6e-27 125.6 113 55.8
Psat1g208320 Pisum sativum HOM05D004176 ORTHO05D004845 3.6e-27 125.6 113 55.8
VMungo0540G2164 Vigna mungo HOM05D004176 ORTHO05D004845 3.6e-27 125.6 113 54.9
FAN16G2426 Fragaria x ananassa HOM05D004176 ORTHO05D004845 4.7e-27 125.2 110 55.5
Gohir.D05G168100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 4.7e-27 125.2 113 54.0
Gorai.009G173200 Gossypium raimondii HOM05D004176 ORTHO05D004845 4.7e-27 125.2 113 54.0
Lalb_Chr20g0122261 Lupinus albus HOM05D004176 ORTHO05D004845 4.7e-27 125.2 113 54.9
Nitab4.5_0003574g0080 Nicotiana tabacum HOM05D004176 ORTHO05D004845 4.7e-27 125.2 113 54.9
FAN11G1228 Fragaria x ananassa HOM05D004176 ORTHO05D004845 6.2e-27 124.8 110 56.4
Glyma.08G058400 Glycine max HOM05D004176 ORTHO05D004845 6.2e-27 124.8 111 55.9
Gohir.A05G165100 Gossypium hirsutum HOM05D004176 ORTHO05D004845 6.2e-27 124.8 113 54.0
Lj1A1212T59 Lonicera japonica HOM05D004176 ORTHO05D004845 6.2e-27 124.8 113 53.1
MD10G1302700 Malus domestica HOM05D004176 ORTHO05D004845 6.2e-27 124.8 111 53.2
QL05p081898 Quercus lobata HOM05D004176 ORTHO05D004845 6.2e-27 124.8 112 55.4
CANSAT56G2709 Cannabis sativa HOM05D004176 ORTHO05D004845 8.1e-27 124.4 113 51.3
FvH4_3g04090 Fragaria vesca HOM05D004176 ORTHO05D004845 8.1e-27 124.4 110 56.4
Pp3c10_6970 Physcomitrium patens HOM05D004176 ORTHO05D004845 8.1e-27 124.4 110 54.5
Prupe.4G036200 Prunus persica HOM05D004176 ORTHO05D004845 8.1e-27 124.4 111 54.1
QL03p053022 Quercus lobata HOM05D004176 ORTHO05D004845 1.1e-26 124.0 113 54.0
AUR62016908 Chenopodium quinoa HOM05D004176 ORTHO05D004845 1.4e-26 123.6 112 51.8
Ca_00256_v3 Cicer arietinum L. HOM05D004176 ORTHO05D004845 1.4e-26 123.6 113 54.0
VMungo0251G0350 Vigna mungo HOM05D004176 ORTHO05D004845 1.4e-26 123.6 111 55.0
EL10Ac8g20615 Beta vulgaris HOM05D004176 ORTHO05D004845 1.8e-26 123.2 112 52.7
Medtr2g011820 Medicago truncatula HOM05D004176 ORTHO05D004845 3.1e-26 122.5 113 54.9
ClCG00G002960 Citrullus lanatus HOM05D004176 ORTHO05D004845 5.2e-26 121.7 104 55.8
DCAR_024887 Daucus carota HOM05D004176 ORTHO05D004845 5.2e-26 121.7 113 51.3
Phvul.006G191800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 6.8e-26 121.3 113 53.1
HanXRQChr16g0517801 Helianthus annuus HOM05D004176 ORTHO05D004845 8.9e-26 120.9 112 53.6
Pp3c1_27360 Physcomitrium patens HOM05D004176 ORTHO05D004845 8.9e-26 120.9 110 50.0
Nn1g03915 Nelumbo nucifera HOM05D004176 ORTHO05D004845 1.2e-25 120.6 118 51.7
RcHm_v2.0_Chr5g0006561 Rosa chinensis HOM05D004176 ORTHO05D004845 1.2e-25 120.6 110 54.5
TPR.G31521 Trifolium pratense HOM05D004176 ORTHO05D004845 1.2e-25 120.6 107 55.1
Thecc.06G198200 Theobroma cacao HOM05D004176 ORTHO05D004845 2.0e-25 119.8 104 57.7
Cc02_g12520 Coffea canephora HOM05D004176 ORTHO05D004845 3.4e-25 119.0 113 52.2
Dinv39813 Davidia involucrata HOM05D004176 ORTHO05D004845 3.4e-25 119.0 105 53.3
MD05G1324800 Malus domestica HOM05D004176 ORTHO05D004845 3.4e-25 119.0 111 51.4
Hund23626 Selenicereus undatus HOM05D004176 ORTHO05D004845 3.4e-25 119.0 112 54.5
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 7.5e-25 117.9 112 55.4
SMO361G0397 Selaginella moellendorffii HOM05D004176 ORTHO05D004845 7.5e-25 117.9 110 50.0
CsaV3_6G049850 Cucumis sativus L. HOM05D004176 ORTHO05D004845 1.7e-24 116.7 112 51.8
Phvul.002G222800 Phaseolus vulgaris HOM05D004176 ORTHO05D004845 3.7e-24 115.5 111 52.3
ECA234G4776 Erigeron canadensis HOM05D004176 ORTHO05D004845 6.4e-24 114.8 106 54.7
ECA248G3644 Erigeron canadensis HOM05D004176 ORTHO05D004845 6.4e-24 114.8 113 50.4
Lsat_1_v5_gn_4_57180 Lactuca sativa HOM05D004176 ORTHO05D004845 1.4e-23 113.6 113 53.1
Nitab4.5_0003465g0060 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.4e-23 113.6 112 53.6
Nitab4.5_0007109g0030 Nicotiana tabacum HOM05D004176 ORTHO05D004845 1.4e-23 113.6 112 53.6
SGA_v2.0_scaffold1019G53794 Striga asiatica HOM05D004176 ORTHO05D004845 1.4e-23 113.6 110 54.5
HanXRQChr01g0005541 Helianthus annuus HOM05D004176 ORTHO05D004845 5.4e-23 111.7 113 47.8
DCAR_028122 Daucus carota HOM05D004176 ORTHO05D004845 7.1e-23 111.3 105 50.5
TAR626G0914 Trochodendron aralioides HOM05D004176 ORTHO05D004845 6.0e-22 108.2 82 67.1
vmacro03824 Vaccinium macrocarpon HOM05D004176 ORTHO05D004845 7.8e-22 107.8 157 40.8
BcaNung00853 Brassica carinata HOM05D004176 ORTHO05D004845 5.1e-21 105.1 83 61.4
Sed0001897 Sechium edule HOM05D004176 ORTHO05D004845 9.5e-20 100.9 86 53.5
SEGI_01037 Sequoiadendron giganteum HOM05D004176 ORTHO05D004845 2.4e-18 96.3 80 57.5
CBR_g30282 Chara braunii HOM05D004176 ORTHO05D004845 1.7e-16 90.1 112 42.9
Migut.I00179 Erythranthe guttata HOM05D004176 ORTHO05D004845 1.7e-16 90.1 118 44.1
Eucgr.E03472 Eucalyptus grandis HOM05D004176 ORTHO05D004845 2.2e-16 89.7 76 61.8
Lsat_1_v5_gn_1_126440 Lactuca sativa HOM05D004176 ORTHO05D004845 1.4e-15 87.0 74 51.4
unitig_37.g12341 Utricularia gibba HOM05D004176 ORTHO05D001465 1.4e-15 87.0 109 45.0
Actinidia01934 Actinidia chinensis HOM05D004176 ORTHO05D004845 1.6e-14 83.6 76 53.9
MBI16_g27830_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D008326 6.0e-14 81.6 64 65.6
CAN.G446.12 Capsicum annuum HOM05D004176 ORTHO05D004845 1.9e-12 76.6 98 40.8
Os07g0563000 Oryza sativa ssp. japonica HOM05D004176 ORTHO05D004845 9.6e-12 74.3 54 63.0
Thecc.07G164700 Theobroma cacao HOM05D004176 ORTHO05D004845 2.6e-09 66.2 65 53.8
RcHm_v2.0_Chr5g0007951 Rosa chinensis HOM05D004176 ORTHO05D004845 1.9e-07 60.1 65 53.8
Migut.N01853 Erythranthe guttata HOM05D004444 ORTHO05D005246 1.6e-06 57.0 76 36.8
Oeu013089.1 Olea europaea HOM05D004444 ORTHO05D005246 1.6e-06 57.0 78 37.2
SalBow6G5617 Salvia bowleyana HOM05D004444 ORTHO05D005246 6.0e-06 55.1 76 36.8


User provided reference genes

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