Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 6.2e-197 690.6 359 100.0
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 1.2e-120 437.2 364 66.5
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 6.7e-119 431.4 360 66.9
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 1.3e-117 427.2 363 64.7
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 4.8e-117 425.2 359 64.6
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.4e-116 423.7 362 63.5
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.7e-115 419.5 362 64.6
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 2.2e-114 416.4 379 62.0
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 2.9e-114 416.0 381 60.1
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 2.9e-114 416.0 367 61.9
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 5.0e-114 415.2 379 60.7
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 1.9e-113 413.3 366 63.4
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 7.2e-113 411.4 363 60.9
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 2.1e-112 409.8 367 61.0
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 2.7e-112 409.5 359 62.7
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 6.1e-112 408.3 360 63.9
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.3e-111 406.4 360 60.6
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 6.8e-111 404.8 358 61.7
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 2.6e-110 402.9 362 61.9
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 4.4e-110 402.1 359 61.6
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 7.5e-110 401.4 355 59.7
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 9.8e-110 401.0 361 60.7
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.7e-109 400.2 364 60.4
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 3.7e-109 399.1 364 59.6
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 6.3e-109 398.3 363 60.1
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 8.3e-109 397.9 360 60.6
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.1e-108 397.5 360 60.6
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.4e-108 397.1 369 58.5
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.4e-108 397.1 360 60.6
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 2.4e-108 396.4 378 59.8
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 3.1e-108 396.0 364 59.9
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 3.1e-108 396.0 378 59.5
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 4.1e-108 395.6 364 60.2
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 7.0e-108 394.8 361 60.4
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.0e-107 393.3 366 59.0
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 2.0e-107 393.3 372 59.1
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.7e-107 392.9 364 60.4
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 3.5e-107 392.5 361 60.7
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 7.7e-107 391.3 361 59.3
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.7e-107 391.3 363 59.2
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 7.7e-107 391.3 363 59.2
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.0e-106 391.0 363 59.2
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.3e-106 390.6 364 60.2
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.3e-106 390.6 357 59.9
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.3e-106 390.6 362 60.2
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 2.3e-106 389.8 364 59.6
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.9e-106 389.4 363 59.8
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 3.8e-106 389.0 363 59.8
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 5.0e-106 388.7 365 59.2
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.5e-105 387.1 360 57.8
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 1.9e-105 386.7 364 57.1
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 3.3e-105 386.0 360 59.7
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 9.5e-105 384.4 361 60.1
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 9.5e-105 384.4 396 57.1
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 2.1e-104 383.3 357 59.9
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 4.7e-104 382.1 387 57.6
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 6.1e-104 381.7 357 58.5
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 8.0e-104 381.3 363 57.9
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 1.0e-103 380.9 356 60.4
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.0e-103 380.9 381 56.7
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.4e-103 380.6 381 57.0
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 2.6e-102 376.3 356 58.1
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.4e-102 375.9 358 58.9
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 4.4e-102 375.6 361 56.5
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.3e-101 374.0 381 57.2
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.3e-101 374.0 376 57.7
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 3.7e-101 372.5 368 56.8
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 6.3e-101 371.7 355 57.2
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 8.3e-101 371.3 359 57.7
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 8.3e-101 371.3 361 55.4
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 8.3e-101 371.3 361 55.7
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.8e-100 370.2 425 50.8
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 2.4e-100 369.8 358 57.8
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 7.0e-100 368.2 367 55.9
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 3.5e-99 365.9 359 56.5
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 3.5e-99 365.9 366 57.1
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 4.5e-99 365.5 360 56.4
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 6.6e-98 361.7 361 55.1
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.5e-97 359.8 371 54.7
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 1.5e-94 350.5 358 55.3
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 3.4e-94 349.4 363 54.0
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 9.8e-94 347.8 360 54.2
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 3.7e-93 345.9 361 54.6
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 6.4e-93 345.1 381 53.3
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.4e-92 343.2 353 56.9
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 3.2e-92 342.8 367 53.7
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 2.7e-91 339.7 341 55.4
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 3.5e-91 339.3 364 53.0
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 3.5e-91 339.3 341 56.3
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 7.8e-91 338.2 365 53.7
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 8.6e-90 334.7 377 51.2
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.1e-88 330.1 365 54.8
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 2.8e-88 329.7 365 54.8
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 6.2e-88 328.6 427 46.6
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 8.9e-87 324.7 378 49.5
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.0e-86 323.6 363 53.2
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 5.8e-86 322.0 367 51.5
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 7.5e-86 321.6 379 50.7
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 7.5e-86 321.6 367 53.4
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 1.3e-85 320.9 357 51.8
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.2e-85 320.1 368 50.0
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 2.9e-85 319.7 357 51.5
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 2.4e-84 316.6 378 48.1
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 3.2e-84 316.2 378 48.1
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 3.0e-82 309.7 363 51.8
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 4.7e-80 302.4 359 48.5
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 6.8e-79 298.5 378 48.9
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 6.8e-79 298.5 378 48.9
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 2.0e-78 297.0 378 48.4
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 1.9e-76 290.4 374 48.7
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 5.4e-76 288.9 378 45.5
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 5.4e-76 288.9 378 45.5
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 1.6e-75 287.3 378 47.4
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 6.4e-69 265.4 301 51.2
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 5.1e-66 255.8 219 61.6
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 4.8e-64 249.2 214 64.0
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 2.6e-62 243.4 387 38.0
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 1.1e-60 238.0 355 43.4
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 6.2e-56 222.2 438 35.4
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 6.4e-53 212.2 302 44.4
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 4.2e-52 209.5 186 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 3.5e-51 206.5 356 36.5
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 7.9e-51 205.3 257 48.6
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 5.8e-46 189.1 207 56.0
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 1.6e-40 171.0 358 33.8
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.2e-35 154.8 156 55.1
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 1.8e-34 151.0 121 66.9
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 3.3e-33 146.7 116 65.5
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 5.1e-18 96.3 213 30.0
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 1.4e-15 88.2 117 47.9
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 4.1e-15 86.7 59 66.1
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 5.9e-14 82.8 250 27.6
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 2.9e-13 80.5 399 22.8
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.1e-12 78.6 139 38.8
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 9.4e-12 75.5 57 64.9
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 5.2e-10 69.7 57 59.6
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 1.3e-08 65.1 47 61.7
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 2.8e-08 63.9 62 58.1
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 5.3e-07 59.7 60 58.3
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 1.6e-06 58.2 60 56.7
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 1.6e-06 58.2 60 56.7


User provided reference genes

Program Settings