Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 1.2e-144 516.5 267 100.0
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 2.5e-70 269.6 190 76.8
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 1.6e-53 213.8 154 68.8
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 3.7e-53 212.6 154 68.2
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 8.2e-53 211.5 154 68.8
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 1.1e-52 211.1 154 68.8
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 1.4e-52 210.7 154 67.5
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 4.1e-52 209.1 154 68.8
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 4.1e-52 209.1 154 67.5
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 5.3e-52 208.8 154 66.2
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 6.9e-52 208.4 269 47.6
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 9.0e-52 208.0 154 68.2
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 1.2e-51 207.6 154 66.9
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.0e-51 206.8 154 66.9
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 2.6e-51 206.5 154 66.9
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 2.6e-51 206.5 154 65.6
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 3.4e-51 206.1 153 64.7
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.4e-51 206.1 154 65.6
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.4e-51 206.1 154 65.6
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 3.4e-51 206.1 154 64.9
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 4.5e-51 205.7 154 66.9
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.0e-50 204.5 154 66.9
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 1.3e-50 204.1 154 64.9
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.7e-50 203.8 154 64.3
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 2.2e-50 203.4 154 63.6
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 3.8e-50 202.6 261 46.7
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.9e-49 200.3 154 63.6
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.9e-49 200.3 153 64.1
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 3.2e-49 199.5 154 66.2
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 3.2e-49 199.5 225 50.7
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 3.2e-49 199.5 154 62.3
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 4.2e-49 199.1 154 64.3
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 4.2e-49 199.1 217 52.5
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 5.5e-49 198.7 154 63.6
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 9.3e-49 198.0 154 62.3
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.6e-48 197.2 150 64.7
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 1.6e-48 197.2 244 46.7
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 2.7e-48 196.4 154 63.6
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 2.7e-48 196.4 154 64.3
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.7e-48 196.4 155 62.6
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 2.7e-48 196.4 156 66.7
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 4.6e-48 195.7 155 66.5
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 7.9e-48 194.9 224 49.1
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 1.3e-47 194.1 154 61.7
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 1.8e-47 193.7 154 61.7
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 3.0e-47 193.0 154 60.4
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 5.1e-47 192.2 243 48.6
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 6.7e-47 191.8 153 64.7
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 5.7e-46 188.7 214 49.5
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 9.7e-46 188.0 156 63.5
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 1.3e-45 187.6 256 44.5
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 2.8e-45 186.4 139 65.5
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 3.7e-45 186.0 203 52.2
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 6.3e-45 185.3 156 60.9
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 1.1e-44 184.5 156 60.3
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 1.8e-44 183.7 156 60.3
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.8e-44 183.7 235 47.7
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 5.3e-44 182.2 145 61.4
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 1.2e-43 181.0 156 59.6
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 1.5e-43 180.6 179 54.7
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 3.4e-43 179.5 156 59.0
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 5.9e-43 178.7 155 58.7
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 7.7e-43 178.3 156 59.0
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 7.7e-43 178.3 156 59.0
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 7.7e-43 178.3 156 59.0
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 7.7e-43 178.3 158 61.4
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 1.0e-42 177.9 156 59.0
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 1.0e-42 177.9 155 59.4
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 1.7e-42 177.2 148 60.1
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 1.7e-42 177.2 156 59.0
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 2.2e-42 176.8 155 58.7
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 3.8e-42 176.0 147 62.6
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 6.5e-42 175.3 155 57.4
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 2.5e-41 173.3 155 57.4
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 4.2e-41 172.6 226 44.7
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 3.6e-40 169.5 146 58.9
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.4e-39 167.5 145 57.9
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.0e-39 166.4 145 57.2
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.0e-39 166.4 145 57.2
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 3.9e-39 166.0 176 52.3
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.1e-38 164.5 140 57.1
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 1.5e-38 164.1 125 62.4
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 2.2e-37 160.2 125 59.2
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.4e-36 157.5 125 60.8
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 6.9e-36 155.2 157 56.1
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 1.2e-35 154.5 141 53.2
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 1.3e-34 151.0 154 55.2
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.7e-34 150.6 125 56.8
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 1.1e-33 147.9 124 54.8
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 2.5e-33 146.7 154 51.3
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 7.9e-32 141.7 126 57.1
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.4e-31 141.0 142 49.3
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.8e-31 140.6 121 55.4
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 2.3e-31 140.2 122 55.7
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 4.4e-30 136.0 154 49.4
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 7.2e-25 118.6 107 60.7
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.1e-24 117.1 143 44.8
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 2.7e-24 116.7 136 46.3
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.1e-22 111.3 85 68.2
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.5e-22 110.9 124 47.6
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 2.0e-22 110.5 133 42.9
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 3.3e-22 109.8 143 47.6
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 1.8e-20 104.0 124 47.6
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 9.1e-20 101.7 85 60.0
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 9.1e-20 101.7 143 46.9
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 9.1e-20 101.7 153 43.1
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 2.5e-17 93.6 68 64.7
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 3.2e-17 93.2 128 45.3
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 2.1e-16 90.5 167 38.3
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 6.1e-16 89.0 162 38.3
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 2.8e-13 80.1 62 58.1
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 8.3e-13 78.6 71 63.4
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 1.6e-08 64.3 51 54.9
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 1.4e-07 61.2 87 39.1
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 1.8e-07 60.8 60 51.7
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.5e-06 57.8 46 54.3


User provided reference genes

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