Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.3e-148 529.6 264 100.0
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 1.3e-130 469.9 305 80.3
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 2.9e-58 229.6 255 50.6
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 2.8e-53 213.0 253 49.0
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 5.8e-51 205.3 290 41.7
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 1.3e-50 204.1 245 45.7
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 4.9e-50 202.2 257 44.7
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 4.9e-50 202.2 237 46.4
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 6.4e-50 201.8 238 43.7
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 8.4e-50 201.4 245 45.7
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 1.9e-49 200.3 252 45.2
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 3.2e-49 199.5 241 45.2
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.2e-48 197.6 244 45.5
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 1.6e-48 197.2 241 44.8
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 1.6e-48 197.2 260 43.8
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 2.1e-48 196.8 246 44.3
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 3.5e-48 196.1 281 41.3
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 7.8e-48 194.9 235 45.5
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 7.8e-48 194.9 239 46.0
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 1.3e-47 194.1 241 45.2
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.3e-47 194.1 246 43.9
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 2.3e-47 193.4 240 45.4
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 2.3e-47 193.4 240 45.0
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 3.9e-47 192.6 245 45.3
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 6.6e-47 191.8 242 44.2
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 6.6e-47 191.8 236 45.8
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 6.6e-47 191.8 239 44.4
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.1e-46 191.0 236 46.2
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.5e-46 190.7 267 41.6
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 1.5e-46 190.7 236 44.9
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.9e-46 190.3 241 43.6
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 2.5e-46 189.9 241 44.4
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 2.5e-46 189.9 245 42.9
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 2.5e-46 189.9 239 44.8
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 3.3e-46 189.5 239 43.1
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 3.3e-46 189.5 238 44.5
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 4.3e-46 189.1 244 43.9
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 5.6e-46 188.7 242 43.8
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 7.3e-46 188.3 240 44.6
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 9.6e-46 188.0 243 46.9
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 9.6e-46 188.0 238 45.0
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 1.2e-45 187.6 239 45.2
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.6e-45 187.2 243 43.6
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 1.6e-45 187.2 242 43.0
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 2.1e-45 186.8 239 42.7
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 2.1e-45 186.8 238 42.9
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 3.6e-45 186.0 244 41.4
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 4.7e-45 185.7 239 43.5
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.1e-44 184.5 313 37.7
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 1.4e-44 184.1 239 43.1
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.4e-44 184.1 239 43.1
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.4e-44 184.1 239 43.1
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 1.4e-44 184.1 238 43.3
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.8e-44 183.7 239 43.1
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 2.4e-44 183.3 243 42.0
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 3.1e-44 183.0 241 44.8
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 5.2e-44 182.2 259 40.5
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 6.8e-44 181.8 251 42.2
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.8e-44 181.8 239 42.7
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 6.8e-44 181.8 241 41.9
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 8.9e-44 181.4 247 43.7
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 1.2e-43 181.0 259 40.2
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 1.2e-43 181.0 252 42.9
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 1.5e-43 180.6 242 43.8
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.0e-43 180.3 239 42.3
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 3.4e-43 179.5 257 42.0
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 3.4e-43 179.5 257 42.0
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 3.4e-43 179.5 242 43.4
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 4.4e-43 179.1 254 42.5
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 4.4e-43 179.1 254 42.5
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 4.4e-43 179.1 254 42.5
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 9.9e-43 177.9 254 42.1
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 1.3e-42 177.6 254 42.1
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.7e-42 177.2 249 43.0
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.7e-42 177.2 141 60.3
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 2.9e-42 176.4 256 41.4
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 3.8e-42 176.0 243 42.8
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 4.9e-42 175.6 254 42.1
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 4.9e-42 175.6 242 43.0
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 6.4e-42 175.3 257 41.6
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 6.4e-42 175.3 281 39.9
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 1.4e-41 174.1 240 42.5
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 1.4e-41 174.1 268 39.9
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 1.9e-41 173.7 260 41.5
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 1.9e-41 173.7 226 42.0
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 2.4e-41 173.3 271 39.5
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 4.2e-41 172.6 229 44.5
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 5.4e-41 172.2 236 43.2
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 9.3e-41 171.4 239 42.7
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 1.2e-40 171.0 298 36.2
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.6e-40 170.6 128 66.4
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 2.3e-39 166.8 238 41.2
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 3.0e-39 166.4 239 42.3
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 2.5e-38 163.3 128 63.3
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 2.1e-37 160.2 238 42.0
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 4.5e-35 152.5 242 39.7
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 9.9e-35 151.4 126 61.1
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 1.7e-34 150.6 242 37.6
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 9.3e-33 144.8 241 39.8
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 1.2e-32 144.4 128 58.6
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.9e-30 137.1 189 42.9
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 1.3e-29 134.4 120 58.3
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 1.4e-28 131.0 264 36.7
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 1.4e-28 131.0 247 35.2
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 5.3e-28 129.0 109 60.6
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 4.9e-26 122.5 234 34.6
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 3.0e-23 113.2 121 48.8
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 5.1e-23 112.5 78 69.2
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 5.6e-22 109.0 78 69.2
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 9.6e-22 108.2 256 31.2
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 1.4e-20 104.4 225 29.3
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 3.1e-20 103.2 196 34.2
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 4.0e-20 102.8 258 32.6
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 5.8e-19 99.0 190 32.1
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 1.3e-18 97.8 109 45.0
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 2.1e-16 90.5 52 80.8
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 1.0e-15 88.2 143 37.8
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 3.3e-14 83.2 128 37.5
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 6.9e-12 75.5 73 46.6
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 9.0e-12 75.1 113 37.2
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 2.6e-11 73.6 134 34.3
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 5.5e-09 65.9 40 67.5
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 2.7e-08 63.5 60 50.0
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 2.7e-08 63.5 60 50.0
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 7.4e-06 55.5 149 28.2
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 9.7e-06 55.1 70 42.9


User provided reference genes

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