Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.8e-298 1028.5 513 100.0
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 3.1e-202 708.8 510 72.5
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 6.5e-200 701.0 528 69.7
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 1.1e-199 700.3 463 75.6
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.9e-199 699.5 463 75.6
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 3.2e-199 698.7 490 73.3
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 5.5e-199 698.0 465 76.3
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.6e-198 696.4 465 76.1
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.6e-198 696.4 463 75.8
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 2.1e-198 696.0 467 75.6
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 3.6e-198 695.3 516 70.3
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 3.6e-198 695.3 456 75.7
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 3.6e-198 695.3 460 76.5
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 4.7e-198 694.9 463 74.9
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 8.0e-198 694.1 463 75.6
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.0e-197 693.7 465 75.7
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 1.4e-197 693.3 455 76.9
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 2.3e-197 692.6 516 70.2
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 2.3e-197 692.6 519 68.6
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 4.0e-197 691.8 460 74.8
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 5.2e-197 691.4 462 75.3
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 6.8e-197 691.0 460 74.8
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 8.8e-197 690.6 515 70.1
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 1.2e-196 690.3 481 72.3
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.2e-196 690.3 464 74.4
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.2e-196 690.3 516 69.8
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 2.6e-196 689.1 525 67.4
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 4.4e-196 688.3 463 74.7
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 7.5e-196 687.6 474 73.4
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 7.5e-196 687.6 483 72.0
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 9.8e-196 687.2 515 69.1
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.3e-195 686.8 463 73.9
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 1.7e-195 686.4 453 76.2
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 1.7e-195 686.4 464 74.8
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.8e-195 685.6 481 71.5
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 3.7e-195 685.3 462 74.9
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 3.7e-195 685.3 455 75.4
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 4.8e-195 684.9 463 73.9
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 6.3e-195 684.5 455 75.6
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 6.3e-195 684.5 472 73.1
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 8.3e-195 684.1 472 73.5
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 1.4e-194 683.3 463 73.4
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 1.8e-194 682.9 455 75.4
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 2.4e-194 682.6 481 71.5
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.4e-194 682.6 522 68.2
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.4e-194 682.6 464 74.4
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 3.1e-194 682.2 478 72.2
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 3.1e-194 682.2 503 70.0
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 7.0e-194 681.0 462 74.5
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 7.0e-194 681.0 465 73.3
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 7.0e-194 681.0 463 73.2
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 1.6e-193 679.9 481 71.3
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 1.6e-193 679.9 461 73.5
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.0e-193 679.5 455 74.9
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 2.0e-193 679.5 455 74.3
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 2.7e-193 679.1 464 73.5
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 3.5e-193 678.7 470 73.6
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 4.5e-193 678.3 464 73.5
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 7.7e-193 677.6 455 74.1
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.3e-192 676.8 456 74.8
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 1.7e-192 676.4 465 72.5
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 2.2e-192 676.0 453 74.2
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.9e-192 675.6 456 73.7
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 6.5e-192 674.5 463 73.4
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.1e-191 673.7 497 69.4
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 1.5e-191 673.3 463 72.4
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.9e-191 672.9 457 74.6
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.5e-191 672.5 512 68.2
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 3.2e-191 672.2 457 74.6
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 3.2e-191 672.2 453 73.7
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 5.5e-191 671.4 462 71.4
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 5.5e-191 671.4 455 73.0
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 7.2e-191 671.0 486 71.2
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.2e-190 670.2 497 69.4
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.7e-190 669.1 455 74.1
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.6e-190 668.7 464 70.9
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 6.1e-190 667.9 465 70.5
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 6.1e-190 667.9 484 70.7
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 1.4e-189 666.8 513 67.4
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 3.0e-189 665.6 462 70.3
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 1.2e-188 663.7 511 66.7
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 2.0e-188 662.9 478 70.3
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 4.4e-188 661.8 494 67.6
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 1.7e-187 659.8 405 79.5
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 2.8e-187 659.1 494 67.0
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 3.7e-187 658.7 453 72.0
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 4.9e-187 658.3 430 74.9
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 6.3e-187 657.9 457 70.7
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 3.1e-186 655.6 458 70.5
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 4.1e-186 655.2 510 65.3
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 1.6e-185 653.3 454 70.7
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 2.0e-185 652.9 462 70.3
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 3.8e-184 648.7 497 65.4
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 5.0e-184 648.3 456 70.4
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 8.6e-184 647.5 455 69.9
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 8.6e-184 647.5 454 70.9
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 1.5e-183 646.7 477 68.8
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 2.5e-183 646.0 513 65.3
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 2.5e-183 646.0 457 71.8
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 3.3e-183 645.6 454 70.7
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 1.6e-182 643.3 474 68.8
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 3.4e-180 635.6 405 76.8
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 7.5e-180 634.4 480 66.0
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.9e-179 632.5 455 68.4
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 6.4e-179 631.3 496 65.5
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 7.0e-178 627.9 524 64.7
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.0e-177 626.3 373 82.0
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.0e-177 626.3 503 65.6
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 7.8e-177 624.4 461 67.5
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 7.3e-175 617.8 373 80.4
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 9.5e-175 617.5 451 67.8
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 1.0e-173 614.0 505 62.6
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 2.6e-172 609.4 529 63.5
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 2.4e-170 602.8 503 63.0
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.1e-162 577.4 455 65.1
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 1.1e-162 577.4 378 77.0
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 3.5e-161 572.4 378 76.5
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 3.9e-160 568.9 454 62.8
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 1.2e-158 563.9 504 60.9
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 2.1e-158 563.1 382 75.4
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.7e-158 562.0 456 62.7
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 9.2e-154 547.7 453 62.9
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 2.2e-147 526.6 728 43.5
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 4.9e-147 525.4 458 59.6
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 1.4e-146 523.9 394 69.5
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 3.3e-143 512.7 450 60.2
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 2.0e-140 503.4 462 57.1
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 2.4e-133 479.9 325 75.4
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.9e-127 460.3 394 64.2
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 8.4e-115 418.3 208 99.5
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 6.5e-107 392.1 237 81.0
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 5.7e-95 352.4 292 61.3
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 3.2e-90 336.7 314 58.6
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 2.2e-86 323.9 292 60.6
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 4.8e-78 296.2 443 38.1
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 5.9e-76 289.3 387 41.3
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 3.6e-73 280.0 392 39.0
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 6.6e-67 259.2 240 58.3
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 1.2e-60 238.4 380 41.6
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.3e-59 234.2 131 86.3
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 1.9e-53 214.5 221 54.8
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 2.0e-52 211.1 170 64.1
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 3.9e-51 206.8 196 57.7
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 3.3e-50 203.8 180 61.1
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 1.9e-42 177.9 98 87.8
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 4.3e-42 176.8 122 68.0
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 7.3e-42 176.0 249 42.2
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 3.1e-40 170.6 132 59.8
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.2e-38 164.5 354 29.7
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 4.9e-38 163.3 90 84.4
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 1.5e-34 151.8 122 63.1
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 1.2e-33 148.7 134 61.2
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 1.2e-31 142.1 80 83.8
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 1.1e-29 135.6 93 73.1
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 3.5e-28 130.6 290 31.0
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 6.0e-28 129.8 132 49.2
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 2.8e-25 120.9 74 79.7
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.6e-23 114.4 83 68.7
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.4e-21 108.6 83 66.3
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 4.2e-13 80.5 55 67.3
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.3e-11 75.5 47 72.3
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 2.3e-11 74.7 43 76.7
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 1.5e-10 72.0 36 86.1
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 1.5e-07 62.0 35 80.0
SMO197G0092 Selaginella moellendorffii HOM05D003197 ORTHO05D003769 1.0e-06 59.3 218 28.9
Psat2g086160 Pisum sativum HOM05D004194 ORTHO05D037373 3.8e-06 57.4 34 76.5


User provided reference genes

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