Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 2006.1 949 100.0
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1538.5 972 73.1
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 971 73.4
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1506.1 952 72.6
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1499.6 972 71.5
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1496.5 955 71.9
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1496.5 961 72.4
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1495.3 984 70.8
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1493.8 967 71.7
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1492.6 972 71.6
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1490.3 966 70.8
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1488.8 971 71.4
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1487.2 950 71.8
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1486.9 969 70.6
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1486.1 977 71.1
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1486.1 972 70.3
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1481.8 970 71.1
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1481.5 963 71.8
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 966 70.8
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 962 71.8
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1480.7 973 71.6
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1479.2 968 72.2
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1479.2 965 70.7
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1478.0 973 71.9
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1477.6 975 70.2
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1475.3 973 70.1
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1473.8 965 70.7
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1472.2 971 70.6
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1472.2 971 70.5
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1471.4 982 70.1
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1471.1 970 70.6
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1471.1 957 70.7
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1470.3 976 70.1
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1469.1 971 70.2
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1468.0 963 70.8
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1467.2 970 69.4
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 964 71.1
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1466.8 968 69.7
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1466.1 964 70.6
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1465.7 967 69.6
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1465.3 968 70.6
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1465.3 951 71.0
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1464.5 965 71.0
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1464.5 958 71.5
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1464.5 963 70.9
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1460.7 969 70.1
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1460.3 964 70.9
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1460.3 959 70.8
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1459.9 968 71.3
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1459.5 967 69.5
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1456.0 958 70.7
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1456.0 976 70.5
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1454.1 966 70.5
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1453.7 949 71.0
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1453.0 963 70.1
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1452.6 967 70.3
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1451.8 965 69.5
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1451.0 970 69.8
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1450.3 955 70.1
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1449.9 973 70.2
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1448.3 968 69.6
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1447.2 970 69.2
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1446.4 963 70.0
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1444.1 962 69.0
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1443.7 966 69.6
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1443.3 962 70.0
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1442.2 964 70.0
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1442.2 962 69.4
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1442.2 951 69.2
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1441.0 939 70.8
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1441.0 964 69.7
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1438.7 974 68.6
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1434.5 949 70.4
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1432.5 969 69.5
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1431.4 973 68.6
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1425.6 965 69.2
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1424.1 969 68.0
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1424.1 965 69.1
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1422.9 970 69.2
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1422.9 971 68.5
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1422.1 968 68.7
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1417.9 955 69.2
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1413.3 970 69.1
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1408.7 952 69.3
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1406.3 955 69.1
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1406.0 952 69.3
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1404.8 969 68.1
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1403.7 966 69.2
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1402.9 957 69.5
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1402.1 972 68.3
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1400.6 952 68.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1397.1 966 67.1
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1395.9 963 67.6
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1394.4 954 69.4
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1394.4 978 66.8
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1392.9 965 67.9
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1390.6 926 70.2
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1387.9 953 69.2
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1387.9 953 69.2
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1386.7 955 68.2
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1384.8 952 68.4
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1380.9 948 68.5
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1380.5 958 67.7
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1379.8 948 68.5
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1378.2 947 68.8
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1376.3 947 68.7
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1371.3 954 68.4
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1367.1 926 69.7
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1365.5 959 68.2
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1364.7 950 65.8
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1338.2 891 70.6
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1329.3 985 64.4
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1318.5 992 64.2
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1314.7 875 69.3
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1305.4 964 64.1
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1298.1 946 66.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1295.4 998 61.3
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1282.7 954 65.9
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1281.5 842 70.9
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1278.8 761 75.2
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1276.5 849 69.3
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1256.1 952 64.5
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1204.5 830 68.3
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1175.6 783 68.7
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1166.8 772 70.3
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1149.8 762 70.6
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1124.0 761 69.5
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.1e-309 1066.6 949 54.9
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 6.4e-302 1040.8 674 74.0
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.0e-299 1033.5 938 54.6
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 4.2e-277 958.4 938 52.6
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 5.9e-271 937.9 946 50.0
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.8e-267 926.4 950 51.1
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 2.8e-265 919.1 687 64.8
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 2.0e-234 816.6 842 49.3
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.6e-226 789.6 557 67.7
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.5e-197 693.3 402 75.1
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 7.0e-131 472.6 286 73.8
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 3.4e-109 400.6 343 57.1
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 6.0e-98 363.2 374 52.9
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 3.3e-96 357.5 206 76.2
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 7.1e-91 339.7 405 46.9
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.9e-84 317.8 202 68.8
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 3.2e-83 314.3 186 74.2
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 1.4e-78 298.9 275 54.9
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 7.8e-74 283.1 159 76.7
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.7e-68 265.4 159 71.7
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.4e-67 262.3 211 59.7
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 6.0e-66 256.9 646 30.0
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 2.9e-60 238.0 143 72.0
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 3.7e-47 194.5 367 37.3
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.2e-44 185.3 947 23.5
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 8.2e-39 166.8 94 76.6
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 7.2e-35 153.7 148 54.1
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.0e-33 149.8 92 71.7
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 2.6e-32 145.2 148 48.6
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 1.2e-29 136.3 92 64.1
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-23 116.3 88 60.2
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-22 113.2 183 36.6
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 1.2e-21 109.8 86 61.6
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 2.0e-21 109.0 103 54.4
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.9e-21 107.5 163 40.5
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 1.3e-20 106.3 184 34.2
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-15 89.7 114 43.9
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 2.4e-14 85.5 121 39.7
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 6.1e-10 70.9 99 39.4
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.0e-09 70.1 70 47.1
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 3.0e-09 68.6 44 68.2
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.2e-08 66.6 76 44.7
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.0e-08 65.9 44 63.6
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.6e-08 65.5 52 61.5


User provided reference genes

Program Settings