Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000532 Vanilla planifolia HOM05D007352 ORTHO05D009389 2.3e-197 693.0 653 100.0
MBI04_g06993_MAGBIO Magnolia biondii HOM05D007352 ORTHO05D009389 2.1e-102 377.5 458 68.6
Nn2g12740 Nelumbo nucifera HOM05D007352 ORTHO05D009389 2.0e-100 370.9 448 69.6
Aqoxy7G01368 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 3.1e-98 363.6 449 67.7
Dinv27397 Davidia involucrata HOM05D007352 ORTHO05D009389 9.1e-98 362.1 445 69.7
Lj9A311T59 Lonicera japonica HOM05D007352 ORTHO05D009389 1.6e-97 361.3 437 70.5
TAR636G0386 Trochodendron aralioides HOM05D007352 ORTHO05D009389 2.9e-96 357.1 449 67.5
TAR636G1169 Trochodendron aralioides HOM05D007352 ORTHO05D009389 2.9e-96 357.1 449 67.5
CDE05G2407 Ceratophyllum demersum HOM05D007352 ORTHO05D009389 2.6e-92 344.0 443 67.0
Peaxi162Scf00038g01145 Petunia axillaris HOM05D007352 ORTHO05D009389 3.4e-92 343.6 445 67.6
Phvul.006G126800 Phaseolus vulgaris HOM05D007352 ORTHO05D009389 5.7e-92 342.8 456 66.0
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.8e-90 337.8 451 67.2
TPR.G26324 Trifolium pratense HOM05D007352 ORTHO05D009389 1.8e-90 337.8 463 64.6
vmacro18843 Vaccinium macrocarpon HOM05D007352 ORTHO05D009389 2.4e-90 337.4 445 67.9
HanXRQChr11g0348741 Helianthus annuus HOM05D007352 ORTHO05D009389 7.8e-89 332.4 442 67.4
Ca_00856_v3 Cicer arietinum L. HOM05D007352 ORTHO05D009389 1.0e-88 332.0 465 63.9
Nitab4.5_0005085g0030 Nicotiana tabacum HOM05D007352 ORTHO05D009389 5.0e-88 329.7 437 67.0
CANSAT35G0590 Cannabis sativa HOM05D007352 ORTHO05D009389 8.6e-88 328.9 460 65.2
PGSC0003DMG400002522 Solanum tuberosum HOM05D007352 ORTHO05D009389 2.5e-87 327.4 432 67.1
Glyma.15G131800 Glycine max HOM05D007352 ORTHO05D009389 3.3e-87 327.0 455 64.4
arahy.Tifrunner.gnm1.ann1.X8VU69 Arachis hypogaea HOM05D007352 ORTHO05D009389 9.5e-87 325.5 468 63.5
Lsat_1_v5_gn_4_98021 Lactuca sativa HOM05D007352 ORTHO05D009389 1.6e-86 324.7 428 68.5
CAN.G1143.23 Capsicum annuum HOM05D007352 ORTHO05D009389 2.1e-86 324.3 429 68.3
Psat1g166520 Pisum sativum HOM05D007352 ORTHO05D009389 2.8e-86 323.9 451 64.7
Solyc03g121110.3 Solanum lycopersicum HOM05D007352 ORTHO05D009389 2.8e-86 323.9 432 66.9
arahy.Tifrunner.gnm1.ann1.Y4G0P0 Arachis hypogaea HOM05D007352 ORTHO05D009389 6.1e-86 322.8 463 63.9
Hund07627 Selenicereus undatus HOM05D007352 ORTHO05D009389 6.1e-86 322.8 449 66.4
Lalb_Chr20g0120141 Lupinus albus HOM05D007352 ORTHO05D009389 8.0e-86 322.4 435 66.9
AUR62031951 Chenopodium quinoa HOM05D007352 ORTHO05D009389 3.1e-85 320.5 450 66.4
Os02g0226900 Oryza sativa ssp. japonica HOM05D007352 ORTHO05D009389 3.1e-85 320.5 453 65.1
EL10Ac9g21188 Beta vulgaris HOM05D007352 ORTHO05D009389 5.2e-85 319.7 445 65.8
Nitab4.5_0004969g0060 Nicotiana tabacum HOM05D007352 ORTHO05D009389 5.2e-85 319.7 437 65.9
Sopen03g039940 Solanum pennellii HOM05D007352 ORTHO05D009389 5.2e-85 319.7 430 67.0
AUR62022237 Chenopodium quinoa HOM05D007352 ORTHO05D009389 5.8e-84 316.2 450 65.8
Rhsim08G0228600 Rhododendron simsii HOM05D007352 ORTHO05D009389 1.3e-83 315.1 426 67.6
Potri.013G105000 Populus trichocarpa HOM05D007352 ORTHO05D009389 1.7e-83 314.7 457 64.1
SGA_v2.0_scaffold265G46057 Striga asiatica HOM05D007352 ORTHO05D009389 2.2e-83 314.3 439 67.0
Medtr2g030540 Medicago truncatula HOM05D007352 ORTHO05D009389 6.4e-83 312.8 445 64.9
Haze_15863 Corylus avellana HOM05D007352 ORTHO05D009389 1.1e-82 312.0 451 64.5
Gohir.A03G111600 Gossypium hirsutum HOM05D007352 ORTHO05D009389 1.9e-82 311.2 444 65.1
BcaB02g11032 Brassica carinata HOM05D007352 ORTHO05D009389 9.2e-82 308.9 455 64.2
BraA05t20827Z Brassica rapa HOM05D007352 ORTHO05D009389 1.2e-81 308.5 449 64.6
Migut.L00048 Erythranthe guttata HOM05D007352 ORTHO05D009389 1.6e-81 308.1 435 66.7
Sabra13G0090700 Salix brachista HOM05D007352 ORTHO05D009389 1.6e-81 308.1 457 63.2
Duzib251G0222 Durio zibethinus HOM05D007352 ORTHO05D009389 7.8e-81 305.8 444 64.2
QL05p019112 Quercus lobata HOM05D007352 ORTHO05D009389 2.3e-80 304.3 458 64.2
Ciclev10025103m.g Citrus clementina HOM05D007352 ORTHO05D009389 3.9e-80 303.5 446 64.1
Ah.01g017290 Amaranthus hybridus HOM05D007352 ORTHO05D009389 8.6e-80 302.4 532 47.4
A05p19210 Brassica napus HOM05D007352 ORTHO05D009389 1.1e-79 302.0 449 64.1
Sed0016070 Sechium edule HOM05D007352 ORTHO05D009389 1.1e-79 302.0 437 65.0
C06p13600 Brassica napus HOM05D007352 ORTHO05D009389 1.5e-79 301.6 450 64.0
Lj6g0022790 Lotus japonicus HOM05D007352 ORTHO05D009389 2.5e-79 300.8 431 64.3
COL.COLO4_27631 Corchorus olitorius HOM05D007352 ORTHO05D009389 5.6e-79 299.7 429 65.5
BcaC08g43959 Brassica carinata HOM05D007352 ORTHO05D009389 1.2e-78 298.5 450 63.8
BolC6t36524H Brassica oleracea HOM05D007352 ORTHO05D009389 1.2e-78 298.5 450 63.8
SalBow1G5626 Salvia bowleyana HOM05D007352 ORTHO05D009389 3.6e-78 297.0 442 64.9
CSS0004060 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 6.2e-78 296.2 401 69.1
Hma1.2p1_0430F.1_g151250 Hydrangea macrophylla HOM05D007352 ORTHO05D009389 6.2e-78 296.2 411 67.9
CSS0040101 Camellia sinensis var. sinensis HOM05D007352 ORTHO05D009389 8.1e-78 295.8 401 69.1
Sp1g38610 Schrenkiella parvula HOM05D007352 ORTHO05D009389 8.1e-78 295.8 455 63.5
Manes.11G031901 Manihot esculenta HOM05D007352 ORTHO05D009389 1.8e-77 294.7 461 60.5
Cpa.g.sc25.26 Carica papaya HOM05D007352 ORTHO05D009389 6.8e-77 292.7 434 65.2
Gohir.D02G136200 Gossypium hirsutum HOM05D007352 ORTHO05D009389 9.8e-76 288.9 424 65.3
Thhalv10011294m.g Eutrema salsugineum HOM05D007352 ORTHO05D009389 1.4e-74 285.0 457 62.6
MELO3C012722.2 Cucumis melo HOM05D007352 ORTHO05D009389 4.1e-74 283.5 453 61.8
ClCG09G008130 Citrullus lanatus HOM05D007352 ORTHO05D009052 2.1e-73 281.2 432 64.1
Carub.0001s4090 Capsella rubella HOM05D007352 ORTHO05D009389 5.1e-72 276.6 450 62.4
AL1G60010 Arabidopsis lyrata HOM05D007352 ORTHO05D009389 5.6e-71 273.1 450 62.2
AT1G51965 Arabidopsis thaliana HOM05D007352 ORTHO05D009389 2.8e-70 270.8 450 62.4
CsaV3_7G026910 Cucumis sativus L. HOM05D007352 ORTHO05D009389 8.9e-69 265.8 460 59.1
MD09G1200200 Malus domestica HOM05D007352 ORTHO05D009389 1.2e-68 265.4 408 64.7
Aa31LG10G2840 Aethionema arabicum HOM05D007352 ORTHO05D009389 1.5e-68 265.0 435 62.1
SHI11130 Sapria himalayana HOM05D007352 ORTHO05D009389 2.2e-67 261.2 454 45.4
Cc06_g12800 Coffea canephora HOM05D007352 ORTHO05D009389 2.9e-67 260.8 406 64.8
CiPaw.02G144900 Carya illinoinensis HOM05D007352 ORTHO05D009389 4.9e-67 260.0 421 63.4
Prupe.3G056800 Prunus persica HOM05D007352 ORTHO05D009389 1.6e-65 255.0 402 65.2
RcHm_v2.0_Chr2g0141041 Rosa chinensis HOM05D007352 ORTHO05D009389 6.0e-65 253.1 403 55.8
Eucgr.F03084 Eucalyptus grandis HOM05D007352 ORTHO05D009389 2.3e-64 251.1 437 60.6
FAN02G2393 Fragaria x ananassa HOM05D007352 ORTHO05D009389 3.9e-64 250.4 401 64.8
Gorai.005G152200 Gossypium raimondii HOM05D007352 ORTHO05D009389 3.9e-64 250.4 397 65.0
FvH4_6g32590 Fragaria vesca HOM05D007352 ORTHO05D009389 5.6e-63 246.5 400 64.8
Atru.BG.161.p Acer truncatum HOM05D007352 ORTHO05D009389 2.4e-61 241.1 393 64.6
Cfa003634 Carpinus fangiana HOM05D007352 ORTHO05D009389 4.4e-60 236.9 404 62.6
THA.LOC104810542 Tarenaya hassleriana HOM05D007352 ORTHO05D009389 1.9e-58 231.5 410 43.2
Thecc.02G309100 Theobroma cacao HOM05D007352 ORTHO05D009389 2.4e-58 231.1 392 64.5
GSVIVG01016956001 Vitis vinifera HOM05D007352 ORTHO05D009389 7.1e-58 229.6 372 59.1
Zm00001eb205030 Zea mays HOM05D007352 ORTHO05D009389 6.0e-57 226.5 400 62.0
Actinidia32110 Actinidia chinensis HOM05D007352 ORTHO05D009389 1.7e-56 224.9 186 58.6
Sc15g0001710 Simmondsia chinensis HOM05D007352 ORTHO05D009389 2.5e-55 221.1 222 52.3
FAN09G1056 Fragaria x ananassa HOM05D007352 ORTHO05D009389 2.4e-50 204.5 221 49.3
Ah.16g103230 Amaranthus hybridus HOM05D007352 ORTHO05D009389 4.3e-39 167.2 124 62.9
PSO832G0057 Papaver somniferum HOM05D007352 ORTHO05D009389 6.2e-38 163.3 269 77.7
VMungo0540G1340 Vigna mungo HOM05D007352 ORTHO05D009389 2.0e-36 158.3 116 64.7
MD15G1412800 Malus domestica HOM05D007352 ORTHO05D009389 7.6e-36 156.4 125 62.4
SEGI_18978 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 1.3e-35 155.6 402 55.2
Aqoxy5G00202 Aquilegia oxysepala HOM05D007352 ORTHO05D009389 2.2e-35 154.8 132 56.8
CARHR042130 Cardamine hirsuta HOM05D007352 ORTHO05D009389 1.4e-34 152.1 121 60.3
Sc15g0001700 Simmondsia chinensis HOM05D007352 ORTHO05D009389 1.9e-31 141.7 101 67.3
FAN05G3498 Fragaria x ananassa HOM05D001329 ORTHO05D002618 1.1e-29 136.0 123 56.9
Ah.16g103250 Amaranthus hybridus HOM05D007352 ORTHO05D009389 5.0e-27 127.1 216 37.0
SGA_v2.0_scaffold115G32057 Striga asiatica HOM05D007352 ORTHO05D009389 3.5e-25 120.9 76 75.0
Actinidia32109 Actinidia chinensis HOM05D000647 ORTHO05D000485 2.2e-19 101.7 75 64.0
FAN05G5710 Fragaria x ananassa HOM05D007352 ORTHO05D009389 3.2e-18 97.8 72 63.9
ATR0751G068 Amborella trichopoda HOM05D007352 ORTHO05D009389 7.2e-18 96.7 155 34.8
FAN14G1294 Fragaria x ananassa HOM05D007352 ORTHO05D009389 1.0e-16 92.8 67 65.7
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 7.7e-12 76.6 163 33.7
Mapoly0031s0063 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.6e-09 68.9 158 29.1
PGR142G1500 Punica granatum HOM05D007202 ORTHO05D009125 2.1e-09 68.6 161 31.7
ATR0782G111 Amborella trichopoda HOM05D006999 ORTHO05D008936 2.7e-09 68.2 150 28.0
BolC7t43049H Brassica oleracea HOM05D006999 ORTHO05D008936 3.6e-09 67.8 159 27.0
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 4.7e-09 67.4 112 33.9
BcaB02g10006 Brassica carinata HOM05D006999 ORTHO05D008936 6.1e-09 67.0 159 27.0
Thhalv10005592m.g Eutrema salsugineum HOM05D006999 ORTHO05D008936 6.1e-09 67.0 153 26.8
ATR1149G109 Amborella trichopoda HOM05D007202 ORTHO05D009125 7.9e-09 66.6 152 30.9
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 7.9e-09 66.6 152 29.6
BcaC06g34726 Brassica carinata HOM05D006999 ORTHO05D008936 1.0e-08 66.2 159 26.4
Sp2g30070 Schrenkiella parvula HOM05D006999 ORTHO05D008936 1.4e-08 65.9 158 26.6
SEGI_35610 Sequoiadendron giganteum HOM05D006999 ORTHO05D008936 2.3e-08 65.1 140 27.9
CARHR281110 Cardamine hirsuta HOM05D006999 ORTHO05D008936 3.0e-08 64.7 170 26.5
TAR622G0387 Trochodendron aralioides HOM05D007202 ORTHO05D009125 3.0e-08 64.7 163 32.5
Atru.chr3.494 Acer truncatum HOM05D006999 ORTHO05D008936 3.9e-08 64.3 161 28.0
arahy.Tifrunner.gnm1.ann1.EU7MKH Arachis hypogaea HOM05D007202 ORTHO05D009125 3.9e-08 64.3 162 29.6
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 3.9e-08 64.3 157 28.0
AL8G44870 Arabidopsis lyrata HOM05D006999 ORTHO05D008936 6.7e-08 63.5 158 25.9
A07p17310 Brassica napus HOM05D006999 ORTHO05D008936 8.8e-08 63.2 159 26.4
C07p25190 Brassica napus HOM05D006999 ORTHO05D008936 8.8e-08 63.2 159 26.4
Carub.0008s2788 Capsella rubella HOM05D006999 ORTHO05D008936 8.8e-08 63.2 158 25.9
CiPaw.06G061800 Carya illinoinensis HOM05D007202 ORTHO05D009125 8.8e-08 63.2 160 29.4
Migut.K00852 Erythranthe guttata HOM05D006999 ORTHO05D008936 8.8e-08 63.2 92 37.0
Gohir.A03G165700 Gossypium hirsutum HOM05D007202 ORTHO05D009125 8.8e-08 63.2 168 26.8
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 8.8e-08 63.2 159 30.2
SGA_v2.0_scaffold102G29846 Striga asiatica HOM05D007202 ORTHO05D009125 8.8e-08 63.2 183 30.1
BraA07t29457Z Brassica rapa HOM05D006999 ORTHO05D008936 1.1e-07 62.8 159 26.4
Gorai.005G211700 Gossypium raimondii HOM05D007202 ORTHO05D009125 1.1e-07 62.8 157 28.0
HanXRQChr13g0392131 Helianthus annuus HOM05D007202 ORTHO05D009125 1.1e-07 62.8 174 28.2
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 1.5e-07 62.4 144 31.2
Aa31LG1G15180 Aethionema arabicum HOM05D006999 ORTHO05D008936 2.0e-07 62.0 158 25.3
AT5G66631 Arabidopsis thaliana HOM05D006999 ORTHO05D008936 2.0e-07 62.0 158 25.3
Solyc02g065510.1 Solanum lycopersicum HOM05D006999 ORTHO05D008936 2.0e-07 62.0 148 27.0
ATR0712G074 Amborella trichopoda HOM05D007202 ORTHO05D009125 2.6e-07 61.6 152 29.6
arahy.Tifrunner.gnm1.ann1.U9PBTF Arachis hypogaea HOM05D007202 ORTHO05D009125 2.6e-07 61.6 162 28.4
Sopen02g015710 Solanum pennellii HOM05D006999 ORTHO05D008936 2.6e-07 61.6 152 27.0
CSS0032654 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 3.3e-07 61.2 162 29.6
Cfa008759 Carpinus fangiana HOM05D007202 ORTHO05D009125 3.3e-07 61.2 169 29.6
SalBow1G0035 Salvia bowleyana HOM05D006999 ORTHO05D008936 3.3e-07 61.2 163 28.8
Sc10g0006710 Simmondsia chinensis HOM05D007202 ORTHO05D009125 3.3e-07 61.2 232 25.9
DCAR_026889 Daucus carota HOM05D007202 ORTHO05D009125 4.4e-07 60.8 163 29.4
CSS0048316 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 5.7e-07 60.5 162 29.6
Sabra05G0104700 Salix brachista HOM05D006999 ORTHO05D008936 5.7e-07 60.5 161 26.7
Thecc.02G157500 Theobroma cacao HOM05D007202 ORTHO05D009125 5.7e-07 60.5 171 29.2
Cc07_g16390 Coffea canephora HOM05D007202 ORTHO05D009125 7.4e-07 60.1 173 26.6
PSO063G1738 Papaver somniferum HOM05D007202 ORTHO05D009125 7.4e-07 60.1 144 31.2
Cpa.g.sc15.132 Carica papaya HOM05D006999 ORTHO05D008936 9.7e-07 59.7 98 29.6
Glyma.20G104200 Glycine max HOM05D007202 ORTHO05D009125 9.7e-07 59.7 162 29.6
CiPaw.01G031400 Carya illinoinensis HOM05D006999 ORTHO05D008936 1.3e-06 59.3 93 33.3
Dinv07882 Davidia involucrata HOM05D007202 ORTHO05D009125 1.3e-06 59.3 160 29.4
Peaxi162Scf00019g00154 Petunia axillaris HOM05D006999 ORTHO05D008936 1.3e-06 59.3 153 26.1
PGR044G0186 Punica granatum HOM05D004079 ORTHO05D005437 1.3e-06 59.3 81 37.0
PGSC0003DMG400001186 Solanum tuberosum HOM05D006999 ORTHO05D008936 1.3e-06 59.3 152 26.3
Actinidia21102 Actinidia chinensis HOM05D007202 ORTHO05D009125 2.8e-06 58.2 161 29.2
Haze_11774 Corylus avellana HOM05D007202 ORTHO05D009125 2.8e-06 58.2 169 28.4
Glyma.05G030900 Glycine max HOM05D004079 ORTHO05D005437 2.8e-06 58.2 85 35.3
Mapoly0096s0019 Marchantia polymorpha HOM05D004079 ORTHO05D005437 2.8e-06 58.2 140 25.0
SEGI_37723 Sequoiadendron giganteum HOM05D007352 ORTHO05D009389 2.8e-06 58.2 52 50.0
HPP92_001056 Vanilla planifolia HOM05D000424 ORTHO05D002854 2.8e-06 58.2 227 24.2
Cc05_g07730 Coffea canephora HOM05D006999 ORTHO05D008936 3.7e-06 57.8 90 31.1
AagrBONN_evm.TU.Sc2ySwM_117.2351 Anthoceros agrestis HOM05D007830 ORTHO05D003673 4.8e-06 57.4 185 27.0
CAN.G93.18 Capsicum annuum HOM05D006999 ORTHO05D008936 4.8e-06 57.4 90 32.2
FAN12G3533 Fragaria x ananassa HOM05D007202 ORTHO05D009125 4.8e-06 57.4 169 29.6
MD06G1185900 Malus domestica HOM05D004079 ORTHO05D005437 4.8e-06 57.4 176 26.7
Nitab4.5_0004292g0030 Nicotiana tabacum HOM05D006999 ORTHO05D008936 4.8e-06 57.4 157 26.1
vmacro19218 Vaccinium macrocarpon HOM05D007173 ORTHO05D009151 4.8e-06 57.4 128 32.0
Duzib147G0594 Durio zibethinus HOM05D006999 ORTHO05D008936 6.3e-06 57.0 159 26.4
SalBow5G5059 Salvia bowleyana HOM05D004079 ORTHO05D005437 6.3e-06 57.0 104 32.7
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 6.3e-06 57.0 143 27.3
arahy.Tifrunner.gnm1.ann1.1R97WW Arachis hypogaea HOM05D004079 ORTHO05D005437 8.2e-06 56.6 81 34.6
arahy.Tifrunner.gnm1.ann1.I97YLG Arachis hypogaea HOM05D004079 ORTHO05D005437 8.2e-06 56.6 81 34.6
Lalb_Chr09g0322731 Lupinus albus HOM05D006999 ORTHO05D008936 8.2e-06 56.6 93 32.3
Medtr5g019030 Medicago truncatula HOM05D006999 ORTHO05D008936 8.2e-06 56.6 98 31.6
SMO364G0905 Selaginella moellendorffii HOM05D031156 ORTHO05D000355 8.2e-06 56.6 188 26.1


User provided reference genes

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