Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HPP92_000450 Vanilla planifolia HOM05D002880 ORTHO05D003450 0.0e+00 3384.0 1716 100.0
TAR625G0893 Trochodendron aralioides HOM05D002880 ORTHO05D003450 0.0e+00 2677.5 1861 74.2
Nn5g30154 Nelumbo nucifera HOM05D002880 ORTHO05D003450 0.0e+00 2663.6 1860 73.3
Aqoxy5G01784 Aquilegia oxysepala HOM05D002880 ORTHO05D003450 0.0e+00 2659.4 1861 73.3
MBI14_g08214_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 0.0e+00 2639.4 1854 73.2
Cfa006971 Carpinus fangiana HOM05D002880 ORTHO05D003450 0.0e+00 2617.0 1810 73.8
Thecc.01G019100 Theobroma cacao HOM05D002880 ORTHO05D003450 0.0e+00 2603.2 1860 72.0
QL06p032741 Quercus lobata HOM05D002880 ORTHO05D003450 0.0e+00 2596.2 1856 72.0
COL.COLO4_21911 Corchorus olitorius HOM05D002880 ORTHO05D003450 0.0e+00 2595.5 1855 71.6
Gorai.007G195100 Gossypium raimondii HOM05D002880 ORTHO05D003450 0.0e+00 2593.9 1863 71.9
CiPaw.07G058400 Carya illinoinensis HOM05D002880 ORTHO05D003450 0.0e+00 2593.1 1859 71.9
Manes.01G145600 Manihot esculenta HOM05D002880 ORTHO05D003450 0.0e+00 2583.5 1859 72.0
Gorai.003G009700 Gossypium raimondii HOM05D002880 ORTHO05D003450 0.0e+00 2577.4 1860 71.1
Gohir.D03G009500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 2574.3 1860 71.0
Duzib187G1438 Durio zibethinus HOM05D002880 ORTHO05D003450 0.0e+00 2571.2 1860 71.3
Duzib147G0886 Durio zibethinus HOM05D002880 ORTHO05D003450 0.0e+00 2570.0 1860 71.3
Dinv40086 Davidia involucrata HOM05D002880 ORTHO05D003450 0.0e+00 2567.7 1860 71.9
PSO675G2090 Papaver somniferum HOM05D002880 ORTHO05D003450 0.0e+00 2565.4 1865 71.6
CSS0040827 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 0.0e+00 2565.0 1861 71.3
CSS0038464 Camellia sinensis var. sinensis HOM05D002880 ORTHO05D003450 0.0e+00 2563.5 1861 71.2
Gohir.A02G170600 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 2563.5 1860 70.9
TWI09G0522 Tripterygium wilfordii HOM05D002880 ORTHO05D003450 0.0e+00 2562.7 1858 71.4
PSO541G3550 Papaver somniferum HOM05D002880 ORTHO05D003450 0.0e+00 2561.2 1865 71.6
Actinidia17445 Actinidia chinensis HOM05D002880 ORTHO05D003450 0.0e+00 2560.8 1860 71.1
MELO3C007903.2 Cucumis melo HOM05D002880 ORTHO05D003450 0.0e+00 2548.9 1860 70.8
Potri.005G114300 Populus trichocarpa HOM05D002880 ORTHO05D003450 0.0e+00 2548.5 1860 71.1
Glyma.01G166400 Glycine max HOM05D002880 ORTHO05D003450 0.0e+00 2545.4 1860 70.9
CANSAT01G1381 Cannabis sativa HOM05D002880 ORTHO05D003450 0.0e+00 2544.6 1859 70.8
Lj2C468G7 Lonicera japonica HOM05D002880 ORTHO05D003450 0.0e+00 2544.6 1819 72.4
CsaV3_6G047090 Cucumis sativus L. HOM05D002880 ORTHO05D003450 0.0e+00 2542.7 1860 70.7
Glyma.11G077000 Glycine max HOM05D002880 ORTHO05D003450 0.0e+00 2538.1 1857 71.0
Eucgr.I02351 Eucalyptus grandis HOM05D002880 ORTHO05D003450 0.0e+00 2536.1 1861 70.6
ClCG01G020300 Citrullus lanatus HOM05D002880 ORTHO05D003450 0.0e+00 2534.2 1864 70.4
Ciclev10024677m.g Citrus clementina HOM05D002880 ORTHO05D003450 0.0e+00 2534.2 1864 70.1
PGR119G1290 Punica granatum HOM05D002880 ORTHO05D003450 0.0e+00 2533.8 1856 70.6
AUR62029462 Chenopodium quinoa HOM05D002880 ORTHO05D003450 0.0e+00 2533.4 1858 70.6
arahy.Tifrunner.gnm1.ann1.FN5NT6 Arachis hypogaea HOM05D002880 ORTHO05D003450 0.0e+00 2528.4 1860 70.5
Sabra05G0093500 Salix brachista HOM05D002880 ORTHO05D003450 0.0e+00 2528.4 1889 69.7
Sed0017656 Sechium edule HOM05D002880 ORTHO05D003450 0.0e+00 2528.1 1860 70.1
arahy.Tifrunner.gnm1.ann1.E76U4D Arachis hypogaea HOM05D002880 ORTHO05D003450 0.0e+00 2526.5 1859 70.4
Phvul.002G108900 Phaseolus vulgaris HOM05D002880 ORTHO05D003450 0.0e+00 2526.5 1859 70.5
Ca_25825_v3 Cicer arietinum L. HOM05D002880 ORTHO05D003450 0.0e+00 2525.4 1859 70.2
Medtr5g022000 Medicago truncatula HOM05D002880 ORTHO05D003450 0.0e+00 2525.4 1858 70.1
Peaxi162Scf00083g00425 Petunia axillaris HOM05D002880 ORTHO05D003450 0.0e+00 2522.3 1890 69.8
SalBow3G1624 Salvia bowleyana HOM05D002880 ORTHO05D003450 0.0e+00 2518.0 1858 70.0
EL10Ac6g15479 Beta vulgaris HOM05D002880 ORTHO05D003450 0.0e+00 2517.7 1859 70.1
Potri.007G057900 Populus trichocarpa HOM05D002880 ORTHO05D003450 0.0e+00 2517.7 1860 70.3
Sc07g0000970 Simmondsia chinensis HOM05D002880 ORTHO05D003450 0.0e+00 2516.9 1853 70.4
DCAR_025997 Daucus carota HOM05D002880 ORTHO05D003450 0.0e+00 2516.5 1858 70.0
Migut.H01155 Erythranthe guttata HOM05D002880 ORTHO05D003450 0.0e+00 2516.5 1859 69.7
AUR62003370 Chenopodium quinoa HOM05D002880 ORTHO05D003450 0.0e+00 2515.0 1858 70.2
Lalb_Chr16g0377511 Lupinus albus HOM05D002880 ORTHO05D003450 0.0e+00 2514.2 1860 69.9
Lj2g0011330 Lotus japonicus HOM05D002880 ORTHO05D003450 0.0e+00 2513.0 1858 70.3
Psat2g154720 Pisum sativum HOM05D002880 ORTHO05D003450 0.0e+00 2510.3 1859 69.7
Sopen02g028690 Solanum pennellii HOM05D002880 ORTHO05D003450 0.0e+00 2509.2 1862 69.9
Cc07_g10710 Coffea canephora HOM05D002880 ORTHO05D003450 0.0e+00 2505.3 1868 70.0
Solyc02g083900.3 Solanum lycopersicum HOM05D002880 ORTHO05D003450 0.0e+00 2505.3 1868 69.8
Sed0027366 Sechium edule HOM05D002880 ORTHO05D003450 0.0e+00 2501.1 1861 69.4
vmacro21922 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 0.0e+00 2500.7 1946 67.5
A06p33500 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2496.1 1857 69.3
MD15G1245900 Malus domestica HOM05D002880 ORTHO05D003450 0.0e+00 2496.1 1854 69.4
Prupe.7G168000 Prunus persica HOM05D002880 ORTHO05D003450 0.0e+00 2494.9 1878 69.3
C03p58840 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2493.0 1856 69.3
Atru.chr1.3786 Acer truncatum HOM05D002880 ORTHO05D003450 0.0e+00 2491.8 1826 70.2
MD02G1132600 Malus domestica HOM05D002880 ORTHO05D003450 0.0e+00 2490.7 1854 69.3
BraA06t26284Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 2489.5 1863 69.0
Zm00001eb329250 Zea mays HOM05D002880 ORTHO05D003450 0.0e+00 2487.2 1856 69.6
HanXRQChr14g0441401 Helianthus annuus HOM05D002880 ORTHO05D003450 0.0e+00 2486.8 1859 69.7
Hund16489 Selenicereus undatus HOM05D002880 ORTHO05D003450 0.0e+00 2486.1 1805 71.2
BolC3t18143H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 2485.7 1866 69.0
THA.LOC104819750 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 0.0e+00 2483.8 1879 68.4
Lsat_1_v5_gn_2_75940 Lactuca sativa HOM05D002880 ORTHO05D003450 0.0e+00 2483.4 1861 69.6
RcHm_v2.0_Chr2g0099461 Rosa chinensis HOM05D002880 ORTHO05D003450 0.0e+00 2482.2 1859 69.3
MSTRG.2713 Avicennia marina HOM05D002880 ORTHO05D003450 0.0e+00 2481.8 1857 69.1
FvH4_1g11860 Fragaria vesca HOM05D002880 ORTHO05D003450 0.0e+00 2480.7 1859 69.1
FAN23G1788 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2477.6 1859 69.1
ECA238G3174 Erigeron canadensis HOM05D002880 ORTHO05D003450 0.0e+00 2476.0 1859 69.2
FAN19G0100 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2475.3 1859 69.0
GSVIVG01018783001 Vitis vinifera HOM05D002880 ORTHO05D003450 0.0e+00 2474.9 1824 70.6
FAN28G1007 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2469.5 1859 68.9
HanXRQChr13g0414661 Helianthus annuus HOM05D002880 ORTHO05D003450 0.0e+00 2467.2 1862 69.6
Sabra07G0049600 Salix brachista HOM05D002880 ORTHO05D003450 0.0e+00 2463.0 1982 65.6
Sp3g31350 Schrenkiella parvula HOM05D002880 ORTHO05D003450 0.0e+00 2456.0 1858 68.5
BcaB08g34776 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2455.6 1856 68.6
THA.LOC104804262 Tarenaya hassleriana HOM05D002880 ORTHO05D003450 0.0e+00 2454.9 1859 68.6
SGA_v2.0_scaffold78G25389 Striga asiatica HOM05D002880 ORTHO05D003450 0.0e+00 2453.3 1905 67.6
AT2G17930 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 0.0e+00 2452.2 1859 68.6
AL3G50950 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 0.0e+00 2451.4 1859 68.5
CARHR108410 Cardamine hirsuta HOM05D002880 ORTHO05D003450 0.0e+00 2451.4 1859 68.5
A09p11620 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2447.2 1860 68.2
FAN26G2624 Fragaria x ananassa HOM05D002880 ORTHO05D003450 0.0e+00 2447.2 1905 67.3
BcaB07g31700 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2446.8 1859 68.2
Thhalv10022516m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 0.0e+00 2442.5 1860 68.3
C09p13660 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2439.5 1860 68.1
Oeu005318.1 Olea europaea HOM05D002880 ORTHO05D003450 0.0e+00 2439.5 1858 67.8
BraA09t36808Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 2435.2 1863 68.0
Carub.0003s3206 Capsella rubella HOM05D002880 ORTHO05D003450 0.0e+00 2435.2 1859 68.3
BcaC04g22939 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2431.0 1859 68.0
BolC9t54256H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 2419.0 1867 67.5
Aa31LG8G15100 Aethionema arabicum HOM05D002880 ORTHO05D003450 0.0e+00 2400.9 1860 67.4
Haze_03765 Corylus avellana HOM05D002880 ORTHO05D003450 0.0e+00 2395.2 1817 69.2
BraA01t00252Z Brassica rapa HOM05D002880 ORTHO05D003450 0.0e+00 2372.0 1855 66.7
A01p02660 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2369.3 1854 66.6
AL7G14960 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 0.0e+00 2369.0 1859 66.3
Sp7g33860 Schrenkiella parvula HOM05D002880 ORTHO05D003450 0.0e+00 2367.4 1865 66.2
C01p02960 Brassica napus HOM05D002880 ORTHO05D003450 0.0e+00 2365.5 1860 66.2
BolC1t00282H Brassica oleracea HOM05D002880 ORTHO05D003450 0.0e+00 2365.5 1860 66.2
Thhalv10024177m.g Eutrema salsugineum HOM05D002880 ORTHO05D003450 0.0e+00 2362.8 1861 66.7
Aa31LG6G13030 Aethionema arabicum HOM05D002880 ORTHO05D003450 0.0e+00 2351.6 1866 65.8
CARHR244480 Cardamine hirsuta HOM05D002880 ORTHO05D003450 0.0e+00 2348.2 1860 65.7
AT4G36080 Arabidopsis thaliana HOM05D002880 ORTHO05D003450 0.0e+00 2343.2 1857 65.5
Carub.0007s0415 Capsella rubella HOM05D002880 ORTHO05D003450 0.0e+00 2335.8 1862 65.5
Nitab4.5_0003382g0060 Nicotiana tabacum HOM05D002880 ORTHO05D003450 0.0e+00 2300.0 1717 70.4
Lj6g0023005 Lotus japonicus HOM05D002880 ORTHO05D003450 0.0e+00 2239.2 1857 63.9
AagrBONN_evm.TU.Sc2ySwM_368.861 Anthoceros agrestis HOM05D002880 ORTHO05D003450 0.0e+00 2211.4 1872 61.7
BcaNung00767 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 2194.5 1859 62.6
Mapoly0010s0094 Marchantia polymorpha HOM05D002880 ORTHO05D003450 0.0e+00 2172.5 1940 59.6
SMO147G0347 Selaginella moellendorffii HOM05D002880 ORTHO05D003450 0.0e+00 2159.0 1858 60.8
Pp3c17_20000 Physcomitrium patens HOM05D002880 ORTHO05D003450 0.0e+00 2130.9 1882 60.0
HPP92_000393 Vanilla planifolia HOM05D002880 ORTHO05D003450 0.0e+00 2054.6 1115 93.6
TPR.G18181 Trifolium pratense HOM05D002880 ORTHO05D003450 0.0e+00 1972.6 1508 67.4
Gohir.D11G183100 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 1964.5 1438 70.0
vmacro23248 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 0.0e+00 1867.4 1508 65.3
Gohir.A11G175500 Gossypium hirsutum HOM05D002880 ORTHO05D003450 0.0e+00 1863.2 1256 74.4
unitig_0.g3 Utricularia gibba HOM05D002880 ORTHO05D003450 0.0e+00 1761.1 1596 60.3
CBR_g31691 Chara braunii HOM05D002880 ORTHO05D003450 0.0e+00 1749.6 2049 49.3
vmacro23472 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 0.0e+00 1612.8 1188 70.5
Rhsim10G0212300 Rhododendron simsii HOM05D002880 ORTHO05D003450 0.0e+00 1565.1 1122 71.4
Lalb_Chr09g0321741 Lupinus albus HOM05D002880 ORTHO05D003450 0.0e+00 1528.5 1144 68.8
BcaC01g02877 Brassica carinata HOM05D002880 ORTHO05D003450 0.0e+00 1506.9 1100 69.8
CAN.G1671.12 Capsicum annuum HOM05D002880 ORTHO05D003450 0.0e+00 1426.8 1092 70.1
SHI08553 Sapria himalayana HOM05D002880 ORTHO05D003450 0.0e+00 1280.4 1049 64.9
MCO16G028 Micromonas commoda HOM05D002880 ORTHO05D003450 0.0e+00 1217.6 1913 39.4
ATR0630G002 Amborella trichopoda HOM05D002880 ORTHO05D003450 0.0e+00 1086.2 789 66.9
CAN.G1671.13 Capsicum annuum HOM05D002880 ORTHO05D003450 2.4e-307 1059.7 791 67.8
PRCOL_00005144 Prasinoderma coloniale HOM05D002880 ORTHO05D003450 4.9e-292 1008.8 2002 33.5
ATR0630G005 Amborella trichopoda HOM05D002880 ORTHO05D003450 3.4e-285 986.1 744 68.5
SHI08552 Sapria himalayana HOM05D002880 ORTHO05D003450 4.4e-285 985.7 801 61.9
TAR381G0408 Trochodendron aralioides HOM05D002880 ORTHO05D003450 1.9e-275 953.7 743 68.5
Lalb_Chr09g0321751 Lupinus albus HOM05D002880 ORTHO05D003450 1.1e-267 927.9 740 66.5
Cre02.g088750 Chlamydomonas reinhardtii HOM05D002880 ORTHO05D003450 9.4e-227 792.0 2277 28.2
Nitab4.5_0026560g0010 Nicotiana tabacum HOM05D002880 ORTHO05D003450 4.5e-213 746.5 547 68.9
Ah.03g148750 Amaranthus hybridus HOM05D002880 ORTHO05D003450 3.2e-198 697.2 546 67.8
Nitab4.5_0005660g0020 Nicotiana tabacum HOM05D002880 ORTHO05D003450 2.7e-197 694.1 521 70.8
Cpa.g.sc6.249 Carica papaya HOM05D002880 ORTHO05D003450 9.5e-195 685.6 579 63.6
Cpa.g.sc6.248 Carica papaya HOM05D002880 ORTHO05D003450 4.4e-176 623.6 392 80.9
Cfa023980 Carpinus fangiana HOM05D002880 ORTHO05D003450 1.9e-166 591.7 1864 26.9
TPR.G18175 Trifolium pratense HOM05D002880 ORTHO05D003450 3.2e-126 458.0 286 82.2
ATR0803G001 Amborella trichopoda HOM05D002880 ORTHO05D003450 1.1e-121 443.0 282 79.8
Gohir.A11G175528 Gossypium hirsutum HOM05D002880 ORTHO05D003450 1.6e-85 322.8 191 85.3
AL5G13110 Arabidopsis lyrata HOM05D002880 ORTHO05D003450 7.0e-73 280.8 256 61.7
Atru.chr1.4017 Acer truncatum HOM05D002880 ORTHO05D003450 8.3e-66 257.3 654 32.9
ATR1041G001 Amborella trichopoda HOM05D002880 ORTHO05D003450 2.4e-65 255.8 155 76.8
unitig_0.g2 Utricularia gibba HOM05D002880 ORTHO05D003450 6.2e-61 241.1 159 78.0
Atru.chr1.4030 Acer truncatum HOM05D002880 ORTHO05D003450 7.3e-54 217.6 145 75.9
Psat4g093120 Pisum sativum HOM05D002880 ORTHO05D003450 4.7e-53 214.9 118 88.1
Atru.chr1.4015 Acer truncatum HOM05D002880 ORTHO05D003450 1.2e-48 200.3 126 68.3
Actinidia17493 Actinidia chinensis HOM05D002880 ORTHO05D003450 6.6e-47 194.5 123 76.4
Actinidia17497 Actinidia chinensis HOM05D002880 ORTHO05D003450 9.6e-46 190.7 121 75.2
vmacro23471 Vaccinium macrocarpon HOM05D002880 ORTHO05D003450 3.0e-39 169.1 177 51.4
COL.COLO4_17676 Corchorus olitorius HOM05D002880 ORTHO05D003450 2.7e-32 146.0 105 71.4
Medtr5g038110 Medicago truncatula HOM05D002880 ORTHO05D038078 3.1e-28 132.5 122 54.9
COL.COLO4_18103 Corchorus olitorius HOM05D002880 ORTHO05D003450 1.0e-23 117.5 80 73.8
Cpa.g.sc6.250 Carica papaya HOM05D002880 ORTHO05D003450 3.7e-21 109.0 55 85.5
Atru.chr1.4014 Acer truncatum HOM05D002880 ORTHO05D003450 1.8e-20 106.7 55 80.0
COL.COLO4_21944 Corchorus olitorius HOM05D002880 ORTHO05D030896 1.3e-18 100.5 66 69.7
COL.COLO4_11384 Corchorus olitorius HOM05D002880 ORTHO05D003450 8.5e-18 97.8 82 63.4
Psat6g156840 Pisum sativum HOM05D000280 ORTHO05D000632 1.1e-17 97.4 68 64.7
COL.COLO4_37332 Corchorus olitorius HOM05D002880 ORTHO05D003450 1.4e-17 97.1 69 72.5
Actinidia15056 Actinidia chinensis HOM05D002880 ORTHO05D001283 2.5e-17 96.3 358 28.8
Psat6g157240 Pisum sativum HOM05D002880 ORTHO05D000335 1.6e-16 93.6 68 63.2
Actinidia11221 Actinidia chinensis HOM05D002880 ORTHO05D038078 3.6e-16 92.4 66 71.2
MBI09_g12804_MAGBIO Magnolia biondii HOM05D002880 ORTHO05D003450 1.3e-13 84.0 42 85.7
Atru.chr1.4016 Acer truncatum HOM05D002880 ORTHO05D052144 1.7e-13 83.6 60 70.0
Actinidia00879 Actinidia chinensis HOM05D002880 ORTHO05D003450 5.3e-12 78.6 42 78.6
Psat5g186400 Pisum sativum HOM05D000280 ORTHO05D000632 2.9e-10 72.8 47 68.1
MBI01_g01265_MAGBIO Magnolia biondii HOM05D000597 ORTHO05D000603 6.1e-08 65.1 30 90.0
Actinidia22979 Actinidia chinensis HOM05D002880 ORTHO05D054390 5.1e-07 62.0 68 52.9
Atru.chr1.4018 Acer truncatum HOM05D002880 ORTHO05D003450 2.0e-06 60.1 40 80.0
Pp3c9_15240 Physcomitrium patens HOM05D002370 ORTHO05D014008 5.7e-06 58.5 281 23.5


User provided reference genes

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