Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.N022300 Gossypium raimondii HOM05D005861 ORTHO05D007151 4.6e-194 681.0 335 100.0
Gorai.009G012700 Gossypium raimondii HOM05D005861 ORTHO05D007151 2.8e-159 565.5 434 71.4
Gohir.A05G011700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 8.1e-159 563.9 430 71.4
Gohir.D05G012700 Gossypium hirsutum HOM05D005861 ORTHO05D007151 2.0e-149 532.7 292 91.1
Thecc.09G140900 Theobroma cacao HOM05D005861 ORTHO05D007151 3.0e-145 518.8 434 65.9
Atru.chr10.266 Acer truncatum HOM05D005861 ORTHO05D007151 1.4e-139 500.0 434 62.4
Ciclev10015087m.g Citrus clementina HOM05D005861 ORTHO05D007151 1.2e-138 496.9 435 61.6
MD10G1226200 Malus domestica HOM05D005861 ORTHO05D007151 3.0e-137 492.3 433 61.4
GSVIVG01012161001 Vitis vinifera HOM05D005861 ORTHO05D007151 3.0e-137 492.3 454 59.9
Nn7g38377 Nelumbo nucifera HOM05D005861 ORTHO05D007151 3.9e-137 491.9 434 61.5
MELO3C002396.2 Cucumis melo HOM05D005861 ORTHO05D007151 1.9e-136 489.6 434 60.6
CsaV3_1G010060 Cucumis sativus L. HOM05D005861 ORTHO05D007151 1.9e-136 489.6 431 61.0
ClCG03G004130 Citrullus lanatus HOM05D005861 ORTHO05D007151 2.5e-136 489.2 433 60.7
Prupe.4G119100 Prunus persica HOM05D005861 ORTHO05D007151 5.7e-136 488.0 433 60.5
TWI38G1305 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 2.2e-135 486.1 436 60.3
Manes.03G071200 Manihot esculenta HOM05D005861 ORTHO05D007151 2.8e-135 485.7 434 59.9
TAR636G0982 Trochodendron aralioides HOM05D005861 ORTHO05D007151 8.2e-135 484.2 435 60.5
RcHm_v2.0_Chr5g0021381 Rosa chinensis HOM05D005861 ORTHO05D007151 1.1e-134 483.8 433 60.3
Potri.003G155100 Populus trichocarpa HOM05D005861 ORTHO05D007151 2.4e-134 482.6 448 58.7
Cfa001144 Carpinus fangiana HOM05D005861 ORTHO05D007151 9.1e-134 480.7 433 60.0
FvH4_3g13130 Fragaria vesca HOM05D005861 ORTHO05D007151 2.6e-133 479.2 433 59.8
arahy.Tifrunner.gnm1.ann1.MH4CM1 Arachis hypogaea HOM05D005861 ORTHO05D007151 1.7e-132 476.5 434 58.8
Sed0025210 Sechium edule HOM05D005861 ORTHO05D007151 5.0e-132 474.9 433 59.6
PSO782G3554 Papaver somniferum HOM05D005861 ORTHO05D007151 1.1e-131 473.8 435 57.0
Cc09_g01980 Coffea canephora HOM05D005861 ORTHO05D007151 1.4e-131 473.4 432 60.0
PSO063G0366 Papaver somniferum HOM05D005861 ORTHO05D007151 1.4e-131 473.4 431 57.5
Aqoxy3G04101 Aquilegia oxysepala HOM05D005861 ORTHO05D007151 1.9e-131 473.0 446 58.1
Dinv05874 Davidia involucrata HOM05D005861 ORTHO05D007151 1.9e-131 473.0 440 59.3
CSS0003156 Camellia sinensis var. sinensis HOM05D005861 ORTHO05D007151 3.2e-131 472.2 432 60.0
Eucgr.D00007 Eucalyptus grandis HOM05D005861 ORTHO05D007151 9.4e-131 470.7 436 58.9
Lj6g0026320 Lotus japonicus HOM05D005861 ORTHO05D007151 9.4e-131 470.7 435 57.5
Duzib168G0529 Durio zibethinus HOM05D005861 ORTHO05D007151 1.2e-130 470.3 414 62.1
FAN16G2684 Fragaria x ananassa HOM05D005861 ORTHO05D007151 3.6e-130 468.8 461 56.0
QL11p011864 Quercus lobata HOM05D005861 ORTHO05D007151 3.6e-130 468.8 433 59.1
QL93p0142_0007 Quercus lobata HOM05D005861 ORTHO05D007151 3.6e-130 468.8 433 59.1
THA.LOC104811881 Tarenaya hassleriana HOM05D005861 ORTHO05D007151 4.6e-130 468.4 435 57.9
MSTRG.18594 Avicennia marina HOM05D005861 ORTHO05D007151 7.9e-130 467.6 432 59.5
FAN21G1611 Fragaria x ananassa HOM05D005861 ORTHO05D007151 1.4e-129 466.8 461 55.7
Glyma.15G156500 Glycine max HOM05D005861 ORTHO05D007151 2.3e-129 466.1 435 57.9
Carub.0007s2100 Capsella rubella HOM05D005861 ORTHO05D007151 5.1e-129 464.9 434 57.4
Sopen02g026550 Solanum pennellii HOM05D005861 ORTHO05D007151 5.1e-129 464.9 453 58.3
Lalb_Chr18g0052021 Lupinus albus HOM05D005861 ORTHO05D007151 6.7e-129 464.5 436 58.3
Glyma.09G049800 Glycine max HOM05D005861 ORTHO05D007151 8.8e-129 464.2 434 57.6
Haze_05240 Corylus avellana HOM05D005861 ORTHO05D007151 4.4e-128 461.8 490 53.9
AL7G33690 Arabidopsis lyrata HOM05D005861 ORTHO05D007151 5.7e-128 461.5 434 57.4
CAN.G809.40 Capsicum annuum HOM05D005861 ORTHO05D007151 7.4e-128 461.1 433 59.6
CARHR226960 Cardamine hirsuta HOM05D005861 ORTHO05D007151 1.3e-127 460.3 434 56.2
Solyc02g081920.3 Solanum lycopersicum HOM05D005861 ORTHO05D007151 1.3e-127 460.3 453 57.6
Sp7g18560 Schrenkiella parvula HOM05D005861 ORTHO05D007151 1.7e-127 459.9 434 57.4
PGSC0003DMG401007333 Solanum tuberosum HOM05D005861 ORTHO05D007151 2.2e-127 459.5 449 57.9
SGA_v2.0_scaffold298G47711 Striga asiatica HOM05D005861 ORTHO05D007151 8.2e-127 457.6 462 54.8
Migut.O00467 Erythranthe guttata HOM05D005861 ORTHO05D007151 1.4e-126 456.8 436 57.1
AT4G20130 Arabidopsis thaliana HOM05D005861 ORTHO05D007151 1.8e-126 456.4 434 56.2
Migut.M02023 Erythranthe guttata HOM05D005861 ORTHO05D007151 3.1e-126 455.7 436 56.7
arahy.Tifrunner.gnm1.ann1.RN3XR3 Arachis hypogaea HOM05D005861 ORTHO05D007151 5.3e-126 454.9 432 57.6
VMungo1309G1344 Vigna mungo HOM05D005861 ORTHO05D007151 5.3e-126 454.9 430 57.4
Medtr2g035660 Medicago truncatula HOM05D005861 ORTHO05D007151 6.9e-126 454.5 434 56.9
BcaB03g11658 Brassica carinata HOM05D005861 ORTHO05D007151 2.0e-125 453.0 434 56.2
Aa31LG6G2540 Aethionema arabicum HOM05D005861 ORTHO05D007151 2.6e-125 452.6 434 56.2
BcaC01g00656 Brassica carinata HOM05D005861 ORTHO05D007151 3.4e-125 452.2 434 56.5
Phvul.009G243500 Phaseolus vulgaris HOM05D005861 ORTHO05D007151 3.4e-125 452.2 431 56.6
A08p14640 Brassica napus HOM05D005861 ORTHO05D007151 1.0e-124 450.7 434 56.2
BraA08t33451Z Brassica rapa HOM05D005861 ORTHO05D007151 1.0e-124 450.7 434 56.2
C03p82790 Brassica napus HOM05D005861 ORTHO05D007151 3.8e-124 448.7 434 56.2
BolC3t20561H Brassica oleracea HOM05D005861 ORTHO05D007151 3.8e-124 448.7 434 56.2
Sc24g0002940 Simmondsia chinensis HOM05D005861 ORTHO05D007151 6.5e-124 448.0 415 58.6
Oeu008732.1 Olea europaea HOM05D005861 ORTHO05D007151 1.4e-123 446.8 290 76.2
TPR.G26579 Trifolium pratense HOM05D005861 ORTHO05D007151 3.2e-123 445.7 434 56.5
unitig_37.g12046 Utricularia gibba HOM05D005861 ORTHO05D007151 3.2e-123 445.7 415 58.3
Peaxi162Scf00036g00158 Petunia axillaris HOM05D005861 ORTHO05D007151 1.2e-122 443.7 414 58.2
HanXRQChr04g0116561 Helianthus annuus HOM05D005861 ORTHO05D007151 1.4e-121 440.3 432 54.9
EL10Ac3g07109 Beta vulgaris HOM05D005861 ORTHO05D007151 1.1e-120 437.2 292 71.6
PGR004G1814 Punica granatum HOM05D005861 ORTHO05D007151 2.6e-120 436.0 400 60.0
Nitab4.5_0000844g0330 Nicotiana tabacum HOM05D005861 ORTHO05D007151 7.4e-120 434.5 468 54.5
Thhalv10027180m.g Eutrema salsugineum HOM05D005861 ORTHO05D007151 6.3e-119 431.4 434 54.4
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 1.4e-118 430.3 290 74.8
Gohir.D05G012400 Gossypium hirsutum HOM05D005861 ORTHO05D007151 1.4e-118 430.3 366 66.4
TWI63G1685 Tripterygium wilfordii HOM05D005861 ORTHO05D007151 5.3e-118 428.3 422 56.9
Nitab4.5_0000632g0140 Nicotiana tabacum HOM05D005861 ORTHO05D007151 7.0e-118 427.9 429 56.4
Psat1g150560 Pisum sativum HOM05D005861 ORTHO05D007151 1.1e-115 420.6 292 68.8
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.2e-114 417.2 267 76.4
ECA236G3447 Erigeron canadensis HOM05D005861 ORTHO05D007151 1.4e-113 413.7 448 50.4
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.8e-111 406.0 288 67.4
Cpa.g.sc30.93 Carica papaya HOM05D005861 ORTHO05D007151 2.0e-109 399.8 286 71.7
CiPaw.09G138900 Carya illinoinensis HOM05D005861 ORTHO05D007151 4.5e-109 398.7 418 54.3
Ah.08g212320 Amaranthus hybridus HOM05D005861 ORTHO05D007151 1.7e-108 396.7 270 70.7
FAN25G2772 Fragaria x ananassa HOM05D005861 ORTHO05D007151 8.5e-108 394.4 467 50.5
COL.COLO4_24113 Corchorus olitorius HOM05D005861 ORTHO05D003578 9.4e-107 391.0 253 76.3
AUR62040329 Chenopodium quinoa HOM05D005861 ORTHO05D007151 9.1e-102 374.4 286 64.3
AUR62039890 Chenopodium quinoa HOM05D005861 ORTHO05D007151 2.0e-101 373.2 285 64.6
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 2.1e-98 363.2 365 55.9
A04p29830 Brassica napus HOM05D005861 ORTHO05D007151 6.1e-98 361.7 271 67.2
CDE02G4422 Ceratophyllum demersum HOM05D005861 ORTHO05D007151 1.5e-96 357.1 417 50.6
Hund25553 Selenicereus undatus HOM05D005861 ORTHO05D007151 1.2e-93 347.4 253 67.6
vmacro03562 Vaccinium macrocarpon HOM05D005861 ORTHO05D007151 5.7e-88 328.6 212 73.1
BraA04t18443Z Brassica rapa HOM05D005861 ORTHO05D007151 9.2e-86 321.2 245 66.5
Zm00001eb345040 Zea mays HOM05D005861 ORTHO05D007151 3.1e-81 306.2 369 47.4
Pp3c8_21700 Physcomitrium patens HOM05D005861 ORTHO05D007151 6.8e-81 305.1 420 41.7
Mapoly0003s0096 Marchantia polymorpha HOM05D005861 ORTHO05D007151 1.5e-80 303.9 272 52.9
AagrBONN_evm.TU.Sc2ySwM_344.4889 Anthoceros agrestis HOM05D005861 ORTHO05D007151 2.0e-80 303.5 306 49.3
Lj1g0026190 Lotus japonicus HOM05D005861 ORTHO05D007151 8.6e-76 288.1 223 65.5
SMO331G0022 Selaginella moellendorffii HOM05D005861 ORTHO05D007151 2.9e-71 273.1 283 47.3
Cfa001273 Carpinus fangiana HOM05D005861 ORTHO05D007151 1.7e-63 247.3 221 62.0
Ca_28373_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 1.2e-58 231.1 151 74.2
CBR_g61479 Chara braunii HOM05D005861 ORTHO05D007151 2.2e-47 193.7 279 39.4
RcHm_v2.0_Chr5g0063511 Rosa chinensis HOM05D005861 ORTHO05D007151 3.3e-43 179.9 115 79.1
RcHm_v2.0_Chr3g0456081 Rosa chinensis HOM05D005861 ORTHO05D007151 9.3e-38 161.8 93 83.9
MD05G1244800 Malus domestica HOM05D005861 ORTHO05D007151 2.1e-37 160.6 197 46.7
Duzib187G1938 Durio zibethinus HOM05D005861 ORTHO05D007151 1.3e-34 151.4 96 81.2
Lj6g0014924 Lotus japonicus HOM05D005861 ORTHO05D007151 4.8e-34 149.4 150 55.3
HPP92_009502 Vanilla planifolia HOM05D005861 ORTHO05D007151 1.1e-33 148.3 93 76.3
Lj1g0009858 Lotus japonicus HOM05D005861 ORTHO05D007151 2.0e-32 144.1 157 51.0
HPP92_009503 Vanilla planifolia HOM05D005861 ORTHO05D007151 4.9e-31 139.4 236 38.1
Os05g0587200 Oryza sativa ssp. japonica HOM05D005861 ORTHO05D007151 1.2e-29 134.8 77 79.2
Lj3g0008154 Lotus japonicus HOM05D005861 ORTHO05D007151 1.6e-29 134.4 142 51.4
Ca_01979_v3 Cicer arietinum L. HOM05D005861 ORTHO05D007151 1.8e-28 131.0 222 39.6
Lj4g0007893 Lotus japonicus HOM05D005861 ORTHO05D007151 2.6e-24 117.1 121 54.5
A03p17610 Brassica napus HOM05D005861 ORTHO05D007151 4.6e-21 106.3 70 72.9
Lj1g0019510 Lotus japonicus HOM05D005861 ORTHO05D007151 4.1e-17 93.2 53 81.1
MD05G1244700 Malus domestica HOM05D005861 ORTHO05D007151 6.7e-12 75.9 34 97.1
MD05G1244900 Malus domestica HOM05D005861 ORTHO05D007151 2.2e-10 70.9 43 81.4
QL93p2001_0005 Quercus lobata HOM05D005861 ORTHO05D007151 3.4e-08 63.5 70 51.4
Peaxi162Scf00524g00007 Petunia axillaris HOM05D001309 ORTHO05D000385 5.9e-08 62.8 53 58.5
PGSC0003DMG400012780 Solanum tuberosum HOM05D005861 ORTHO05D007151 5.9e-08 62.8 71 50.7
PRCOL_00004288 Prasinoderma coloniale HOM05D027521 ORTHO05D007151 1.7e-07 61.2 264 24.2


User provided reference genes

Program Settings