Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 3.2e-119 431.8 219 100.0
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.2e-115 419.9 220 98.2
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 6.2e-115 417.5 220 97.7
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 8.6e-109 397.1 220 91.8
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 6.2e-107 391.0 220 90.0
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 8.1e-107 390.6 220 91.4
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.0e-105 386.0 220 89.1
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.6e-105 385.6 220 90.5
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 2.4e-103 379.0 220 88.2
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 2.3e-101 372.5 220 87.7
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 4.3e-100 368.2 222 85.1
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 5.6e-100 367.9 222 86.0
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 7.3e-100 367.5 220 85.0
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 9.5e-100 367.1 220 85.0
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 1.2e-99 366.7 222 85.6
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 1.2e-99 366.7 222 85.6
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 4.7e-99 364.8 216 86.1
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 6.2e-99 364.4 216 84.3
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 1.4e-98 363.2 221 84.6
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.4e-98 363.2 222 85.6
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 1.4e-98 363.2 220 85.0
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 1.8e-98 362.8 222 83.3
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 2.3e-98 362.5 221 85.1
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 2.3e-98 362.5 216 85.2
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 3.1e-98 362.1 216 84.3
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 3.1e-98 362.1 221 86.4
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 4.0e-98 361.7 220 84.5
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 4.0e-98 361.7 216 83.8
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 4.0e-98 361.7 222 84.2
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 5.2e-98 361.3 221 85.1
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 6.8e-98 360.9 221 85.1
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 8.9e-98 360.5 221 84.6
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 8.9e-98 360.5 221 84.6
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 8.9e-98 360.5 221 84.6
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 8.9e-98 360.5 221 84.6
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 8.9e-98 360.5 220 85.0
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 8.9e-98 360.5 216 85.6
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 1.2e-97 360.1 216 83.3
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.2e-97 360.1 216 83.3
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.2e-97 360.1 222 83.8
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 2.0e-97 359.4 221 83.7
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 2.0e-97 359.4 220 83.2
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 2.0e-97 359.4 221 82.4
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 2.0e-97 359.4 220 82.3
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 2.0e-97 359.4 222 83.8
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 2.6e-97 359.0 221 84.6
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 2.6e-97 359.0 221 84.6
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 2.6e-97 359.0 220 83.6
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 2.6e-97 359.0 221 84.2
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 3.4e-97 358.6 217 83.9
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 3.4e-97 358.6 217 86.2
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 3.4e-97 358.6 222 82.9
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 4.4e-97 358.2 216 82.9
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 5.8e-97 357.8 219 84.0
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 1.3e-96 356.7 221 84.2
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 1.3e-96 356.7 221 84.2
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 1.3e-96 356.7 221 84.2
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.3e-96 356.7 220 82.7
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 83.2
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 4.9e-96 354.8 221 82.4
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 6.4e-96 354.4 221 83.7
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 6.4e-96 354.4 222 82.4
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 6.4e-96 354.4 220 82.3
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 8.4e-96 354.0 221 82.8
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 1.1e-95 353.6 221 82.8
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.1e-95 353.6 217 84.8
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 1.9e-95 352.8 220 81.4
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 3.2e-95 352.1 220 82.3
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 3.2e-95 352.1 223 82.5
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 9.2e-95 350.5 220 81.4
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 2.1e-94 349.4 217 83.9
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.7e-94 349.0 221 83.7
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.7e-94 349.0 218 83.0
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 80.9
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 4.6e-94 348.2 221 81.4
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 6.0e-94 347.8 221 81.4
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 1.3e-93 346.7 220 80.9
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 1.3e-93 346.7 218 82.1
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 1.3e-93 346.7 217 82.5
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 1.7e-93 346.3 220 81.8
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 2.3e-93 345.9 220 81.4
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 2.3e-93 345.9 220 81.4
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 3.0e-93 345.5 220 80.9
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 5.1e-93 344.7 220 83.2
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 8.6e-93 344.0 217 83.4
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 8.6e-93 344.0 216 82.4
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 80.9
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.9e-92 342.8 231 78.8
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 2.5e-92 342.4 220 80.5
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 3.3e-92 342.0 217 82.9
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 5.6e-92 341.3 221 80.1
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 7.3e-92 340.9 220 79.1
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 7.3e-92 340.9 221 79.2
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 9.6e-92 340.5 218 82.1
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 9.6e-92 340.5 218 82.1
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.6e-91 339.7 220 78.6
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 2.1e-91 339.3 211 81.5
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 2.1e-91 339.3 216 81.5
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 4.7e-91 338.2 211 83.9
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 6.2e-91 337.8 219 79.5
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.8e-90 336.3 219 79.5
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 2.4e-90 335.9 216 81.0
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 2.4e-90 335.9 219 79.0
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 3.1e-90 335.5 221 77.4
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 3.1e-90 335.5 216 81.0
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 4.0e-90 335.1 217 80.6
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 4.0e-90 335.1 216 80.6
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 5.2e-90 334.7 211 82.0
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 8.9e-90 334.0 211 81.5
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 8.9e-90 334.0 216 80.1
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 2.6e-89 332.4 216 81.0
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.6e-89 332.4 221 76.5
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 5.8e-89 331.3 220 77.7
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 7.6e-89 330.9 220 79.1
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 2.2e-88 329.3 226 77.9
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 2.2e-88 329.3 216 80.6
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 2.2e-88 329.3 217 79.7
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 4.9e-88 328.2 219 79.0
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 6.4e-88 327.8 216 79.2
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.3e-85 320.1 221 76.9
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 1.9e-79 299.7 225 74.2
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 7.1e-79 297.7 223 71.7
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.1e-78 296.2 194 79.4
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 6.0e-78 294.7 173 84.4
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 7.9e-78 294.3 161 88.2
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 1.3e-75 287.0 161 85.7
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 2.9e-72 275.8 225 65.3
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.2e-71 272.3 183 73.8
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.6e-70 270.0 161 83.2
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.6e-70 270.0 161 80.7
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.5e-70 268.9 161 80.1
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.3e-69 266.9 157 80.9
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 2.6e-65 252.7 220 65.5
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 6.7e-61 238.0 222 62.2
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 8.7e-61 237.7 217 58.5
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 5.0e-56 221.9 221 59.7
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 4.2e-47 192.2 158 60.1
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 1.6e-46 190.3 171 58.5
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 3.3e-44 182.6 166 55.4
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 4.8e-43 178.7 127 70.9
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.4e-42 177.2 139 73.4
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 2.0e-25 120.2 105 68.6
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.8e-13 80.5 55 74.5
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.8e-13 80.5 55 74.5
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.1e-10 71.2 58 69.0
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.0e-08 64.7 59 66.1
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 2.8e-06 56.6 100 38.0


User provided reference genes

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