Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.4e-115 417.2 229 100.0
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 8.4e-115 417.2 229 100.0
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.9e-107 392.1 229 95.2
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.5e-106 389.0 229 90.8
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.5e-105 385.2 229 93.0
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 6.0e-105 384.4 229 92.6
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 7.7e-92 340.9 231 85.7
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 3.1e-85 318.9 230 80.9
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 5.9e-68 261.5 229 71.2
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 1.1e-61 240.7 229 67.2
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 4.1e-61 238.8 235 60.0
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.6e-60 236.9 229 65.5
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 7.7e-60 234.6 231 64.9
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.0e-59 234.2 229 64.6
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.3e-59 233.8 232 62.9
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.8e-59 232.3 230 62.2
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 8.5e-59 231.1 232 64.2
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 8.5e-59 231.1 229 64.6
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.9e-58 229.9 229 62.0
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.9e-58 229.9 229 62.0
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 2.5e-58 229.6 230 63.0
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 3.2e-58 229.2 229 65.9
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.2e-57 227.3 229 62.9
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 3.6e-57 225.7 230 62.2
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 4.7e-57 225.3 227 63.9
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 1.8e-56 223.4 229 63.3
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 6.8e-56 221.5 229 61.1
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 8.8e-56 221.1 230 61.3
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 8.8e-56 221.1 230 61.3
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 1.5e-55 220.3 229 60.3
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.0e-55 219.9 228 60.5
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 4.4e-55 218.8 230 62.2
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.7e-55 218.4 230 60.4
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 7.5e-55 218.0 229 61.6
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 1.1e-53 214.2 229 62.0
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 1.8e-53 213.4 229 61.1
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 2.4e-53 213.0 234 60.7
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 3.1e-53 212.6 229 59.0
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.1e-53 212.6 230 61.7
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 4.1e-53 212.2 238 60.5
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 7.0e-53 211.5 229 60.3
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 9.1e-53 211.1 231 59.7
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.2e-52 210.7 231 60.2
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 1.6e-52 210.3 229 58.1
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.6e-52 210.3 229 59.4
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 2.7e-52 209.5 229 59.0
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.7e-52 209.5 229 60.7
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 3.5e-52 209.1 235 58.7
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 3.5e-52 209.1 235 58.7
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 7.7e-52 208.0 217 63.1
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.7e-51 206.8 231 58.4
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.7e-51 206.8 229 57.6
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 2.3e-51 206.5 230 58.7
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.0e-51 205.3 127 85.0
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 5.0e-51 205.3 229 60.3
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 8.6e-51 204.5 126 84.9
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.1e-50 204.1 256 53.5
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.5e-50 203.8 249 54.6
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 3.3e-50 202.6 229 58.1
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 3.3e-50 202.6 126 84.1
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 7.2e-50 201.4 233 57.1
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 7.2e-50 201.4 219 61.2
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.6e-49 199.1 229 56.8
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 3.6e-49 199.1 230 60.0
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 3.6e-49 199.1 127 79.5
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 4.7e-49 198.7 229 56.3
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 4.7e-49 198.7 229 56.3
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 6.1e-49 198.4 127 79.5
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 8.0e-49 198.0 127 79.5
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 8.0e-49 198.0 229 55.5
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 8.0e-49 198.0 226 58.8
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.0e-48 197.6 229 55.5
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 3.0e-48 196.1 229 53.3
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 4.0e-48 195.7 230 57.0
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 4.0e-48 195.7 229 56.3
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 5.2e-48 195.3 240 55.4
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 8.9e-48 194.5 125 78.4
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 8.9e-48 194.5 125 78.4
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 8.9e-48 194.5 229 54.6
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.2e-47 194.1 125 77.6
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.2e-47 194.1 122 82.0
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.2e-47 194.1 225 57.8
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.5e-47 193.7 245 51.8
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.5e-47 193.7 229 58.1
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 2.6e-47 193.0 125 77.6
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 2.6e-47 193.0 127 79.5
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 2.6e-47 193.0 229 56.8
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 3.4e-47 192.6 229 56.3
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 4.4e-47 192.2 127 79.5
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 4.4e-47 192.2 229 55.5
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.8e-47 191.0 232 52.6
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 9.8e-47 191.0 229 55.0
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 2.2e-46 189.9 228 58.3
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 3.7e-46 189.1 226 56.6
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 8.3e-46 188.0 229 56.3
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.4e-45 187.2 210 58.6
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.4e-45 187.2 126 75.4
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 3.2e-45 186.0 229 55.9
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 4.1e-45 185.7 265 50.9
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 4.1e-45 185.7 235 51.9
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 5.4e-45 185.3 236 55.1
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 7.0e-45 184.9 255 53.3
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 9.2e-45 184.5 227 56.4
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.2e-44 184.1 228 55.7
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 1.6e-44 183.7 229 55.5
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 2.7e-44 183.0 207 55.1
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 4.5e-44 182.2 127 74.8
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 5.9e-44 181.8 229 57.2
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 6.6e-43 178.3 259 51.4
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.3e-42 176.0 106 86.8
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 3.1e-40 169.5 134 67.2
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 4.0e-40 169.1 129 72.9
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 6.8e-40 168.3 209 55.5
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 2.0e-39 166.8 105 82.9
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 3.4e-39 166.0 125 72.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.3e-38 164.1 230 50.9
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.2e-38 163.3 229 50.7
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 4.9e-38 162.2 227 48.0
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 5.4e-37 158.7 214 51.9
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 5.4e-37 158.7 214 51.9
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.7e-35 153.7 222 48.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 5.0e-35 152.1 127 65.4
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 7.3e-34 148.3 95 77.9
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 4.7e-33 145.6 123 65.9
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-32 144.4 127 64.6
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 2.3e-32 143.3 215 49.8
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 5.2e-32 142.1 232 45.7
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 6.8e-32 141.7 198 53.5
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 8.9e-32 141.4 130 60.8
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-31 141.0 131 60.3
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.5e-31 140.6 124 64.5
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.6e-31 139.8 185 55.7
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 3.4e-31 139.4 101 73.3
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 3.4e-31 139.4 85 85.9
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 7.5e-31 138.3 109 69.7
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.7e-30 137.1 185 52.4
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 2.2e-30 136.7 133 59.4
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 2.9e-30 136.3 126 57.9
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 2.4e-29 133.3 232 42.7
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 1.6e-28 130.6 229 44.1
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.5e-28 129.4 204 45.6
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 8.9e-24 114.8 103 56.3
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 9.9e-23 111.3 186 45.2
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 2.9e-22 109.8 158 52.5
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 7.1e-21 105.1 242 39.7
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 6.0e-20 102.1 154 52.6
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.1e-19 99.0 82 64.6
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 8.6e-19 98.2 79 65.8
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 8.1e-17 91.7 153 49.7
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 3.8e-14 82.8 65 63.1
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 3.8e-14 82.8 48 83.3
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 3.2e-13 79.7 88 47.7
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 4.6e-12 75.9 185 38.4
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 6.6e-11 72.0 115 35.7
TWI63G1746 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.5e-10 70.1 127 49.6
Sc19g0001960 Simmondsia chinensis HOM05D004341 ORTHO05D005075 2.8e-09 66.6 124 47.6
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 6.2e-09 65.5 41 70.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 1.1e-08 64.7 100 43.0
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 5.3e-08 62.4 37 75.7
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 6.9e-08 62.0 41 75.6
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 7.6e-07 58.5 154 39.6
Dinv14194 Davidia involucrata HOM05D004341 ORTHO05D005075 1.7e-06 57.4 124 40.3


User provided reference genes

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