Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.3e-125 451.1 231 100.0
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 9.4e-114 413.7 231 93.5
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.0e-81 304.3 247 70.9
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.4e-79 298.5 247 70.9
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.3e-78 297.0 258 65.9
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.7e-78 295.4 258 66.3
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.4e-77 291.6 204 77.9
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.5e-76 288.9 258 63.6
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.3e-75 287.0 258 65.1
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.7e-70 270.0 259 61.0
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.5e-68 262.3 204 71.1
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.6e-68 261.9 201 71.6
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 2.3e-67 259.6 259 59.8
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 1.1e-64 250.8 206 66.5
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 1.9e-61 240.0 269 54.6
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 3.2e-61 239.2 282 53.5
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.1e-61 238.8 258 57.8
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 6.6e-59 231.5 258 55.0
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 1.9e-58 229.9 259 53.7
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.5e-58 229.6 138 89.1
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.5e-58 229.6 138 89.1
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.5e-58 229.6 138 89.1
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.3e-58 229.2 142 86.6
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.6e-57 226.9 138 87.7
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 2.1e-57 226.5 190 64.2
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 6.2e-57 224.9 261 54.4
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 8.1e-57 224.6 258 53.5
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.8e-56 221.5 136 87.5
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.9e-56 221.1 132 89.4
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 2.0e-55 219.9 258 51.9
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 4.4e-55 218.8 200 59.5
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 9.9e-55 217.6 193 61.7
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 9.9e-55 217.6 258 53.9
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 2.2e-54 216.5 259 51.0
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 4.9e-54 215.3 260 50.8
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 6.4e-54 214.9 249 51.0
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 8.3e-54 214.5 191 60.7
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 8.3e-54 214.5 258 51.2
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.1e-53 214.2 258 51.6
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 1.4e-53 213.8 227 55.1
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 1.9e-53 213.4 191 61.3
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 1.9e-53 213.4 227 55.1
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 2.4e-53 213.0 200 59.0
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 4.1e-53 212.2 187 61.5
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 4.1e-53 212.2 258 50.0
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 7.1e-53 211.5 258 50.4
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 1.2e-52 210.7 214 55.1
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 2.1e-52 209.9 258 49.2
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 3.5e-52 209.1 191 60.7
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 3.5e-52 209.1 186 61.3
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 6.0e-52 208.4 190 60.0
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 6.0e-52 208.4 257 49.0
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.0e-51 207.6 258 49.2
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 1.7e-51 206.8 261 49.0
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 3.9e-51 205.7 258 49.2
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 1.1e-50 204.1 192 56.8
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 1.1e-50 204.1 258 49.6
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 1.9e-50 203.4 200 55.0
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 3.3e-50 202.6 191 58.1
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 3.3e-50 202.6 260 49.2
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 3.3e-50 202.6 194 58.2
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 4.3e-50 202.2 185 61.1
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 5.6e-50 201.8 258 51.6
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 7.3e-50 201.4 200 56.5
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 2.1e-49 199.9 258 48.1
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 2.8e-49 199.5 258 48.1
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 3.6e-49 199.1 180 61.7
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 6.2e-49 198.4 259 47.5
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 8.1e-49 198.0 201 55.7
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 8.1e-49 198.0 191 57.1
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.4e-48 197.2 213 51.6
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 1.4e-48 197.2 184 56.5
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 2.4e-48 196.4 257 47.5
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 2.4e-48 196.4 143 71.3
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 3.1e-48 196.1 258 48.1
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 5.2e-48 195.3 184 57.6
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.2e-48 195.3 184 57.6
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 6.8e-48 194.9 114 85.1
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 8.9e-48 194.5 184 57.6
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 8.9e-48 194.5 184 58.2
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 8.9e-48 194.5 185 58.4
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 2.0e-47 193.4 238 50.4
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 2.6e-47 193.0 200 54.5
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 4.4e-47 192.2 263 45.6
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 5.8e-47 191.8 259 46.7
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 9.9e-47 191.0 330 40.9
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 9.9e-47 191.0 330 40.9
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 9.9e-47 191.0 201 54.2
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 2.2e-46 189.9 256 46.5
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 2.2e-46 189.9 259 46.7
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 2.9e-46 189.5 263 46.4
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.8e-46 189.1 187 56.7
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 3.8e-46 189.1 186 56.5
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 3.8e-46 189.1 194 54.6
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 4.9e-46 188.7 260 45.4
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 6.4e-46 188.3 230 50.0
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 1.1e-45 187.6 198 55.1
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 1.1e-45 187.6 193 52.8
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 1.4e-45 187.2 191 53.4
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 1.4e-45 187.2 259 45.6
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 1.9e-45 186.8 259 46.3
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 2.4e-45 186.4 194 53.1
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 4.2e-45 185.7 191 52.4
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 9.2e-45 184.5 259 45.6
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 3.5e-44 182.6 213 50.2
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 4.6e-44 182.2 210 50.5
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 6.0e-44 181.8 258 45.7
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.0e-43 181.0 191 51.8
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.0e-43 181.0 183 57.9
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 1.3e-43 180.6 191 51.3
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 2.3e-43 179.9 258 43.8
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 8.7e-43 177.9 191 51.8
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 8.7e-43 177.9 191 51.8
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 8.7e-43 177.9 191 51.8
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 1.9e-42 176.8 262 43.9
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 3.3e-42 176.0 105 82.9
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 3.3e-42 176.0 195 50.8
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 9.6e-42 174.5 259 44.4
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 8.4e-38 161.4 166 53.6
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.9e-37 160.2 158 55.1
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.4e-37 158.7 157 54.8
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 7.1e-37 158.3 225 43.6
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 1.6e-36 157.1 194 44.8
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 1.3e-35 154.1 118 66.1
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.5e-34 150.6 206 41.3
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 5.6e-34 148.7 133 60.2
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 6.4e-30 135.2 156 46.8
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 1.0e-19 101.3 66 69.7
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 2.3e-19 100.1 180 35.6
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 3.4e-15 86.3 116 45.7
COL.COLO4_06666 Corchorus olitorius HOM05D005832 ORTHO05D007117 5.0e-06 55.8 58 56.9


User provided reference genes

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