Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 2.4e-142 508.8 258 100.0
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.5e-139 499.6 258 98.8
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 4.5e-133 478.0 258 95.0
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 7.7e-125 450.7 258 89.1
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 2.2e-124 449.1 278 85.3
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 2.7e-117 425.6 258 85.7
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.3e-108 396.7 264 79.9
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 1.1e-107 393.7 271 76.8
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.1e-107 393.7 266 78.9
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 2.8e-106 389.0 264 78.8
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 6.2e-106 387.9 266 77.1
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 1.0e-105 387.1 244 79.9
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 5.2e-105 384.8 265 76.6
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 8.9e-105 384.0 245 79.6
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 4.4e-104 381.7 270 74.8
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 9.8e-104 380.6 216 88.9
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 3.7e-103 378.6 219 85.8
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 6.4e-103 377.9 268 75.4
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 2.4e-102 375.9 247 78.5
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 2.4e-102 375.9 268 73.9
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 9.2e-102 374.0 238 80.3
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 1.6e-101 373.2 262 76.0
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 2.7e-101 372.5 219 84.0
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 3.5e-101 372.1 275 73.8
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 7.8e-101 370.9 242 78.9
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 1.3e-100 370.2 271 74.5
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 6.6e-100 367.9 272 72.8
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 3.3e-99 365.5 270 71.1
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 4.3e-99 365.2 263 74.9
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 1.2e-98 363.6 270 70.4
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 1.6e-98 363.2 207 87.4
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 1.6e-98 363.2 249 74.7
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 3.6e-98 362.1 224 82.1
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.4e-97 360.1 217 83.4
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 1.8e-97 359.8 250 74.4
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 5.2e-97 358.2 254 74.4
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 6.8e-97 357.8 227 78.0
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 2.0e-96 356.3 231 77.1
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 3.4e-96 355.5 215 81.4
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 5.8e-96 354.8 255 71.4
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 7.5e-96 354.4 222 79.7
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 1.3e-95 353.6 228 77.2
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 1.3e-95 353.6 219 80.8
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 2.2e-95 352.8 248 72.6
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 4.9e-95 351.7 206 86.9
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 1.4e-94 350.1 239 74.5
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 1.9e-94 349.7 237 75.1
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 2.4e-94 349.4 217 80.6
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 2.4e-94 349.4 221 80.5
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 2.4e-94 349.4 242 73.6
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 9.2e-94 347.4 217 79.3
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 1.6e-93 346.7 216 78.7
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 2.1e-93 346.3 219 79.0
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 3.5e-93 345.5 243 72.4
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 3.5e-93 345.5 247 72.5
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 3.5e-93 345.5 217 78.8
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 4.6e-93 345.1 216 78.2
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 6.0e-93 344.7 217 78.8
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 7.8e-93 344.4 237 73.8
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 1.0e-92 344.0 217 79.3
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 2.3e-92 342.8 217 78.8
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 3.0e-92 342.4 214 79.0
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 3.0e-92 342.4 217 78.8
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 3.9e-92 342.0 216 77.8
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 5.1e-92 341.7 217 78.8
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 5.1e-92 341.7 237 72.2
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 8.6e-92 340.9 216 77.8
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 8.6e-92 340.9 212 76.4
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 8.6e-92 340.9 217 78.3
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 1.1e-91 340.5 260 71.5
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.1e-91 340.5 245 70.6
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 1.9e-91 339.7 213 78.9
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 1.9e-91 339.7 217 78.3
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 2.5e-91 339.3 239 72.8
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 5.6e-91 338.2 212 75.9
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 2.1e-90 336.3 219 75.8
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 2.8e-90 335.9 204 81.4
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 2.8e-90 335.9 233 72.5
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 2.8e-90 335.9 214 77.6
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 6.2e-90 334.7 302 63.9
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 8.1e-90 334.3 216 79.6
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.4e-89 333.6 216 74.1
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.4e-89 333.6 249 71.1
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 1.8e-89 333.2 259 71.4
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 1.8e-89 333.2 259 71.4
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 5.2e-89 331.6 249 71.5
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 6.8e-89 331.3 218 78.0
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 8.9e-89 330.9 257 70.0
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 8.9e-89 330.9 209 78.9
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 2.0e-88 329.7 240 72.5
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 2.6e-88 329.3 189 84.1
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 5.8e-88 328.2 259 70.3
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 5.8e-88 328.2 240 72.5
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 2.9e-87 325.9 239 72.4
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 3.7e-87 325.5 212 79.7
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.1e-86 323.9 208 74.5
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 4.1e-86 322.0 206 79.1
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 4.1e-86 322.0 256 69.1
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 7.1e-86 321.2 236 71.2
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 2.7e-85 319.3 219 75.3
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 6.0e-85 318.2 254 70.1
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 6.0e-85 318.2 214 75.2
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 3.9e-84 315.5 178 86.5
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 3.9e-84 315.5 214 74.3
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 3.4e-80 302.4 225 67.6
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 8.4e-79 297.7 206 69.9
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 1.9e-78 296.6 219 72.1
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 4.8e-74 282.0 207 72.9
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.4e-73 280.4 186 71.5
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 6.6e-68 261.5 179 69.8
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 4.6e-61 238.8 179 61.5
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 2.5e-59 233.0 190 57.9
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 1.7e-55 220.3 136 79.4
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 1.5e-51 207.2 177 62.1
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 7.6e-48 194.9 114 84.2
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 6.5e-47 191.8 247 44.1
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 2.5e-43 179.9 207 46.9
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 1.3e-26 124.4 171 38.6
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.0e-23 114.8 79 70.9
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 5.5e-22 109.0 75 76.0
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 6.3e-18 95.5 56 78.6
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 3.2e-14 83.2 164 36.0
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.2e-11 74.7 85 50.6
Lsat_1_v5_gn_2_115981 Lactuca sativa HOM05D002933 ORTHO05D009221 5.4e-09 65.9 252 25.4
MD07G1191200 Malus domestica HOM05D002933 ORTHO05D009221 2.0e-08 63.9 224 25.0
MD01G1121500 Malus domestica HOM05D002933 ORTHO05D009221 4.5e-08 62.8 226 27.0
CANSAT56G4077 Cannabis sativa HOM05D002933 ORTHO05D009221 5.0e-07 59.3 184 26.1
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 8.5e-07 58.5 180 25.6
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 1.1e-06 58.2 150 27.3
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 1.9e-06 57.4 155 25.8
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 3.2e-06 56.6 150 26.0
ECA238G2744 Erigeron canadensis HOM05D002933 ORTHO05D009221 3.2e-06 56.6 181 27.6
Aqoxy4G03026 Aquilegia oxysepala HOM05D002933 ORTHO05D009221 4.2e-06 56.2 244 25.4
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 4.2e-06 56.2 151 27.2
CsaV3_5G026270 Cucumis sativus L. HOM05D002933 ORTHO05D009221 4.2e-06 56.2 177 24.9
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 4.2e-06 56.2 150 26.0


User provided reference genes

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