Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 2.2e-257 891.7 430 100.0
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 2.3e-251 871.7 425 98.6
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.1e-251 871.3 422 99.3
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 3.0e-158 562.4 425 65.4
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 4.0e-158 562.0 422 64.2
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 6.1e-151 538.1 429 60.6
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 1.4e-150 537.0 424 60.6
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 5.7e-149 531.6 433 59.4
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 5.7e-149 531.6 425 60.2
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 1.3e-148 530.4 422 60.2
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 1.3e-148 530.4 422 60.2
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 1.7e-148 530.0 425 59.5
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 2.2e-148 529.6 421 59.1
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 2.2e-148 529.6 422 60.2
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 2.8e-148 529.3 422 60.2
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 2.8e-148 529.3 421 58.9
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 3.7e-148 528.9 432 59.0
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 1.8e-147 526.6 421 58.7
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 2.4e-147 526.2 452 56.4
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 2.4e-147 526.2 424 59.4
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 4.1e-147 525.4 422 59.7
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 4.1e-147 525.4 422 59.7
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 9.2e-147 524.2 423 60.0
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 2.7e-146 522.7 421 58.7
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 3.5e-146 522.3 412 60.0
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 4.5e-146 521.9 424 59.2
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 7.8e-146 521.2 421 59.4
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 3.9e-145 518.8 425 59.3
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 2.5e-144 516.2 430 58.4
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 9.5e-144 514.2 421 57.5
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 9.5e-144 514.2 421 57.7
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 1.2e-143 513.8 421 57.7
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 1.6e-143 513.5 422 58.3
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 1.6e-143 513.5 430 59.5
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 8.0e-143 511.1 414 59.9
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 1.4e-142 510.4 421 58.4
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 1.4e-142 510.4 438 57.8
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 1.4e-142 510.4 438 56.8
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 1.4e-142 510.4 422 58.3
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 1.4e-142 510.4 422 58.3
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.8e-142 510.0 421 57.7
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.8e-142 510.0 421 57.5
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 4.0e-142 508.8 421 58.2
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 5.2e-142 508.4 438 56.6
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 9.8e-141 504.2 424 58.5
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 1.3e-140 503.8 422 57.1
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 1.1e-139 500.7 421 56.8
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.4e-139 499.6 408 59.1
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 5.4e-139 498.4 453 52.1
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 6.0e-138 495.0 412 57.5
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 1.3e-137 493.8 433 56.4
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 3.3e-136 489.2 423 56.3
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 1.2e-135 487.3 428 56.3
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 1.2e-135 487.3 439 53.8
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.6e-135 486.9 423 57.2
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 3.6e-135 485.7 476 52.1
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 8.0e-135 484.6 429 55.7
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 1.4e-134 483.8 425 55.1
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 1.8e-134 483.4 425 55.8
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 3.1e-134 482.6 432 55.1
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 6.8e-134 481.5 431 56.1
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 8.9e-134 481.1 427 56.0
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 5.8e-133 478.4 488 50.6
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 7.5e-133 478.0 462 52.2
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 8.3e-132 474.6 410 57.8
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 4.6e-130 468.8 451 53.0
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 7.8e-130 468.0 421 55.3
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 1.5e-128 463.8 424 51.9
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 1.2e-127 460.7 369 59.9
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 1.8e-126 456.8 426 53.1
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 1.2e-125 454.1 441 51.5
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 6.4e-124 448.4 423 53.4
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 1.6e-122 443.7 425 53.4
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.6e-122 443.7 332 64.2
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 5.6e-120 435.3 347 61.7
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 6.2e-119 431.8 425 49.9
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 1.5e-117 427.2 422 51.4
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.9e-112 410.2 429 49.4
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 7.3e-112 408.3 409 49.9
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 9.6e-112 407.9 388 53.1
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 1.5e-109 400.6 346 54.6
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 4.4e-109 399.1 421 50.8
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 4.4e-109 399.1 421 50.8
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.9e-107 393.7 429 48.3
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 2.1e-106 390.2 347 54.5
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 5.1e-105 385.6 413 44.8
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 1.3e-103 380.9 460 45.2
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 1.2e-93 347.8 456 39.9
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 7.4e-88 328.6 446 38.1
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 2.1e-87 327.0 410 40.2
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 1.2e-85 321.2 481 38.0
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 2.7e-74 283.5 218 62.8
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 7.9e-74 282.0 384 38.0
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 4.3e-72 276.2 250 54.4
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 7.4e-72 275.4 203 62.1
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 3.6e-58 229.9 181 60.2
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 3.2e-51 206.8 186 50.0
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 4.7e-50 203.0 186 50.0
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 1.8e-49 201.1 185 50.8
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 3.0e-49 200.3 157 58.0
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 2.3e-36 157.5 164 52.4
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 6.6e-36 156.0 144 56.2
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 8.6e-36 155.6 147 49.0
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 8.6e-36 155.6 164 51.8
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 1.5e-35 154.8 98 71.4
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 2.5e-35 154.1 164 51.2
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 3.3e-35 153.7 122 58.2
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.5e-32 144.8 118 56.8
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 2.6e-32 144.1 150 49.3
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 1.4e-30 138.3 126 57.9
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 1.9e-27 127.9 82 65.9
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 3.3e-27 127.1 103 57.3
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 4.3e-27 126.7 125 50.4
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 8.0e-26 122.5 81 66.7
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 4.0e-25 120.2 110 54.5
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 8.3e-23 112.5 83 62.7
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.4e-22 110.9 82 58.5
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.0e-21 107.8 106 48.1
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 4.6e-21 106.7 84 60.7
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 6.0e-21 106.3 65 69.2
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 2.5e-19 100.9 88 53.4
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 3.3e-19 100.5 56 75.0
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 2.1e-18 97.8 118 44.9
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.2e-16 92.0 80 50.0
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 3.0e-12 77.4 112 36.6
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 2.1e-10 71.2 61 47.5
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 3.1e-09 67.4 166 25.3
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 2.6e-08 64.3 59 45.8
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 3.4e-08 63.9 59 57.6
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 1.1e-06 58.9 98 32.7
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 2.4e-06 57.8 98 32.7
BcaC05g25566 Brassica carinata HOM05D005601 ORTHO05D007265 7.1e-06 56.2 98 32.7


User provided reference genes

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