Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1646.7 776 100.0
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1617.8 769 99.3
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1613.2 769 98.8
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1462.2 770 88.7
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1451.0 769 87.5
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1435.6 769 87.3
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1397.1 769 84.7
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1395.9 769 84.7
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1385.5 769 83.7
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1349.7 768 81.4
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1340.9 767 80.8
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1335.1 784 79.3
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1335.1 763 80.9
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1333.9 769 79.3
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1330.9 771 79.4
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1325.8 771 79.2
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1325.5 773 80.1
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1324.7 763 80.3
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1323.9 769 79.5
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1323.5 767 80.1
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1322.8 768 79.8
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1320.1 769 78.3
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1319.7 773 79.8
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1319.3 767 79.3
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1314.7 752 80.6
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1313.9 768 79.2
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1313.5 769 79.7
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1307.4 768 79.4
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1303.1 769 78.2
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1297.3 748 80.3
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1296.6 783 79.6
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1294.6 770 77.8
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1294.6 768 78.1
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1290.8 771 79.9
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1286.2 761 78.4
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1283.5 767 77.2
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1283.5 767 77.1
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1282.7 768 77.1
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1281.5 768 76.8
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1279.6 767 78.4
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1278.1 770 77.7
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1265.4 770 76.8
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1264.2 770 76.0
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1263.4 770 76.4
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1261.5 773 75.3
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1257.7 778 75.6
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1255.4 770 76.1
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1250.3 763 75.5
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1250.0 761 76.3
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1249.2 770 75.3
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1248.8 761 76.5
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1248.4 761 76.6
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1245.0 769 75.8
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1244.6 761 76.1
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1243.0 764 76.4
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1242.3 773 74.9
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1241.9 775 75.4
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1240.3 770 75.8
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1238.8 774 75.6
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1238.4 771 75.2
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1236.9 770 74.2
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1236.9 770 75.5
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1236.9 773 74.3
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1236.5 769 74.8
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1236.5 761 75.8
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1234.2 767 75.2
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1233.4 763 75.6
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1230.7 771 73.8
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1230.3 769 74.6
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1229.9 785 73.2
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1226.8 760 75.5
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1224.9 770 74.9
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1219.5 759 74.2
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1218.0 767 73.4
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1216.4 769 73.3
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1216.4 768 73.7
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1215.3 764 74.9
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1214.1 786 72.1
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1212.2 769 74.1
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1211.4 767 73.5
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1208.0 768 74.2
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1205.3 775 72.4
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1204.9 772 72.3
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1203.0 769 73.0
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1203.0 770 72.6
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1203.0 770 73.5
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1202.6 770 73.4
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1199.9 759 73.6
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1199.9 766 72.7
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1199.9 763 74.0
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1195.3 775 71.9
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1194.9 764 71.2
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1191.4 769 72.8
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1189.5 685 79.1
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1182.2 767 72.1
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1174.1 764 70.2
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1166.8 770 71.6
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1163.7 768 71.2
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1161.0 771 70.6
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1158.7 754 74.0
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1157.9 765 69.4
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1156.4 765 71.5
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1151.7 774 70.8
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1150.6 766 70.8
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1147.5 776 68.9
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1146.0 768 71.0
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1145.2 768 70.3
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1143.6 768 70.6
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1140.2 765 70.8
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1131.3 761 69.5
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1130.5 768 70.3
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1130.5 768 70.3
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1127.5 768 70.1
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1127.5 768 69.9
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1124.4 767 70.0
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1120.5 767 69.6
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1116.7 766 69.8
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1116.7 766 69.8
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1110.9 768 69.7
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1100.5 768 69.0
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1083.9 803 64.4
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.4e-309 1064.3 688 72.5
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 1.9e-307 1058.9 770 65.6
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 1.6e-306 1055.8 768 67.3
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 2.2e-300 1035.4 766 66.1
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 1.9e-296 1022.3 559 82.3
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.5e-288 996.1 709 68.5
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 2.8e-287 991.9 770 63.9
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 5.3e-262 907.9 565 75.6
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 4.1e-246 855.1 579 69.6
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 6.6e-228 794.7 779 51.1
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.2e-216 757.3 756 50.4
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 8.3e-207 724.5 763 49.7
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 1.1e-193 681.0 765 46.3
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 7.6e-192 674.9 764 47.6
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 4.6e-173 612.5 650 48.9
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 8.8e-132 475.3 408 58.3
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 1.4e-116 424.9 370 59.7
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.3e-111 408.3 321 62.6
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.3e-100 370.9 203 82.8
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.2e-89 334.0 203 73.9
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 2.7e-88 330.9 275 59.3
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 1.8e-55 221.9 378 38.9
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 3.1e-52 211.1 454 32.4
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.5e-46 192.2 151 60.9
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 6.5e-42 176.8 149 59.7
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 6.1e-40 170.2 162 54.3
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 5.1e-39 167.2 148 57.4
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 7.7e-35 153.3 122 58.2
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 3.7e-29 134.4 119 55.5
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.8e-28 132.1 88 67.0
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.6e-27 128.3 513 24.2
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 1.0e-26 126.3 82 70.7
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 4.2e-25 120.9 77 70.1
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 1.6e-24 119.0 183 38.3
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.7e-22 110.5 75 64.0
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 1.2e-19 102.8 127 43.3
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 3.8e-18 97.8 300 27.7
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 1.0e-15 89.7 71 60.6
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 6.5e-10 70.5 39 79.5
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.8e-07 62.4 48 62.5
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 2.6e-06 58.5 48 56.2


User provided reference genes

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