Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G120800 Gossypium raimondii HOM05D001127 ORTHO05D012710 2.1e-63 245.7 126 100.0
Gohir.D12G188368 Gossypium hirsutum HOM05D001127 ORTHO05D012710 5.1e-33 144.8 123 67.5
Gorai.008G202200 Gossypium raimondii HOM05D001127 ORTHO05D012710 2.5e-32 142.5 123 66.7
Gohir.D06G074550 Gossypium hirsutum HOM05D001127 ORTHO05D012710 3.7e-31 138.7 123 65.0
Gorai.001G198200 Gossypium raimondii HOM05D001127 ORTHO05D012710 6.7e-25 117.9 70 90.0
Gohir.A02G086302 Gossypium hirsutum HOM05D001127 ORTHO05D012710 3.1e-14 82.4 50 82.0
Gohir.D05G341000 Gossypium hirsutum HOM05D001127 ORTHO05D012710 3.1e-14 82.4 50 82.0
Gorai.013G024400 Gossypium raimondii HOM05D001127 ORTHO05D002230 6.9e-14 81.3 47 87.2
Gohir.D04G112833 Gossypium hirsutum HOM05D001127 ORTHO05D012710 5.9e-13 78.2 40 95.0
Gohir.A13G021100 Gossypium hirsutum HOM05D001127 ORTHO05D002230 2.9e-12 75.9 47 83.0
AL5G26010 Arabidopsis lyrata HOM05D001127 ORTHO05D012710 2.3e-09 66.2 43 79.1
AL5G36140 Arabidopsis lyrata HOM05D001127 ORTHO05D002230 5.1e-09 65.1 46 73.9
Aa31sc33G90 Aethionema arabicum HOM05D001127 ORTHO05D002230 6.7e-09 64.7 46 73.9
Carub.0005s2165 Capsella rubella HOM05D001127 ORTHO05D002230 6.7e-09 64.7 46 73.9
Cpa.g.sc1.293 Carica papaya HOM05D001127 ORTHO05D002230 6.7e-09 64.7 50 70.0
MSTRG.9190 Avicennia marina HOM05D001127 ORTHO05D002230 1.5e-08 63.5 50 70.0
AT3G55020 Arabidopsis thaliana HOM05D001127 ORTHO05D002230 2.0e-08 63.2 43 76.7
BcaNung04654 Brassica carinata HOM05D001127 ORTHO05D002230 2.0e-08 63.2 43 76.7
A09p48040 Brassica napus HOM05D001127 ORTHO05D002230 2.0e-08 63.2 43 76.7
C08p30260 Brassica napus HOM05D001127 ORTHO05D002230 2.0e-08 63.2 43 76.7
BolC8t50633H Brassica oleracea HOM05D001127 ORTHO05D002230 2.0e-08 63.2 43 76.7
BraA09t40257Z Brassica rapa HOM05D001127 ORTHO05D002230 2.0e-08 63.2 43 76.7
CARHR165040 Cardamine hirsuta HOM05D001127 ORTHO05D002230 2.0e-08 63.2 43 76.7
Thhalv10010127m.g Eutrema salsugineum HOM05D001127 ORTHO05D002230 2.0e-08 63.2 43 76.7
THA.LOC104809989 Tarenaya hassleriana HOM05D001127 ORTHO05D002230 2.0e-08 63.2 43 76.7
Cc09_g02300 Coffea canephora HOM05D001127 ORTHO05D002230 2.5e-08 62.8 43 72.1
Duzib114G0575 Durio zibethinus HOM05D001127 ORTHO05D002230 2.5e-08 62.8 43 74.4
PGR044G2328 Punica granatum HOM05D001127 ORTHO05D002230 2.5e-08 62.8 48 75.0
Duzib128G1061 Durio zibethinus HOM05D001127 ORTHO05D002230 3.3e-08 62.4 43 74.4
COL.COLO4_06786 Corchorus olitorius HOM05D001127 ORTHO05D002230 4.3e-08 62.0 43 72.1
Manes.07G105500 Manihot esculenta HOM05D001127 ORTHO05D002230 4.3e-08 62.0 43 74.4
Sed0016528 Sechium edule HOM05D001127 ORTHO05D002230 4.3e-08 62.0 46 71.7
Sed0022503 Sechium edule HOM05D001127 ORTHO05D002230 4.3e-08 62.0 43 76.7
Hund22440 Selenicereus undatus HOM05D001127 ORTHO05D002230 4.3e-08 62.0 49 71.4
AL4G36590 Arabidopsis lyrata HOM05D001127 ORTHO05D002230 5.7e-08 61.6 43 74.4
AT2G39280 Arabidopsis thaliana HOM05D001127 ORTHO05D002230 5.7e-08 61.6 43 74.4
Eucgr.J01140 Eucalyptus grandis HOM05D001127 ORTHO05D002230 5.7e-08 61.6 43 74.4
Sp5g07400 Schrenkiella parvula HOM05D001127 ORTHO05D002230 5.7e-08 61.6 43 74.4
THA.LOC104824244 Tarenaya hassleriana HOM05D001127 ORTHO05D002230 5.7e-08 61.6 43 74.4
Thecc.10G064300 Theobroma cacao HOM05D001127 ORTHO05D002230 5.7e-08 61.6 43 74.4
CsaV3_5G006420 Cucumis sativus L. HOM05D001127 ORTHO05D002230 7.4e-08 61.2 43 74.4
Thhalv10017641m.g Eutrema salsugineum HOM05D001127 ORTHO05D002230 7.4e-08 61.2 43 72.1
PGR004G2892 Punica granatum HOM05D001127 ORTHO05D002230 7.4e-08 61.2 51 66.7
TAR636G0989 Trochodendron aralioides HOM05D001127 ORTHO05D012710 7.4e-08 61.2 41 75.6
Actinidia38233 Actinidia chinensis HOM05D001127 ORTHO05D002230 9.7e-08 60.8 43 74.4
Ah.10g033120 Amaranthus hybridus HOM05D001127 ORTHO05D002230 9.7e-08 60.8 42 73.8
EL10Ac2g03527 Beta vulgaris HOM05D001127 ORTHO05D002230 9.7e-08 60.8 45 68.9
ClCG02G013750 Citrullus lanatus HOM05D001127 ORTHO05D002230 9.7e-08 60.8 43 74.4
Ciclev10030687m.g Citrus clementina HOM05D001127 ORTHO05D002230 9.7e-08 60.8 43 74.4
MELO3C011716.2 Cucumis melo HOM05D001127 ORTHO05D002230 9.7e-08 60.8 43 74.4
Migut.F02011 Erythranthe guttata HOM05D001127 ORTHO05D002230 9.7e-08 60.8 43 74.4
Potri.008G046600 Populus trichocarpa HOM05D001127 ORTHO05D002230 9.7e-08 60.8 43 74.4
arahy.Tifrunner.gnm1.ann1.B3B375 Arachis hypogaea HOM05D001127 ORTHO05D002230 1.3e-07 60.5 43 74.4
arahy.Tifrunner.gnm1.ann1.D60R3M Arachis hypogaea HOM05D001127 ORTHO05D002230 1.3e-07 60.5 43 74.4
Carub.0004s2133 Capsella rubella HOM05D001127 ORTHO05D002230 1.3e-07 60.5 43 72.1
Dinv31380 Davidia involucrata HOM05D001127 ORTHO05D002230 1.3e-07 60.5 52 61.5
Sabra08G0032900 Salix brachista HOM05D001127 ORTHO05D002230 1.3e-07 60.5 44 70.5
Sopen04g004720 Solanum pennellii HOM05D001127 ORTHO05D002230 1.3e-07 60.5 46 69.6
Atru.chr12.606 Acer truncatum HOM05D001127 ORTHO05D002230 2.2e-07 59.7 43 72.1
Actinidia03011 Actinidia chinensis HOM05D001127 ORTHO05D002230 2.2e-07 59.7 43 72.1
Lsat_1_v5_gn_2_115380 Lactuca sativa HOM05D001127 ORTHO05D002230 2.2e-07 59.7 49 69.4
Potri.010G215000 Populus trichocarpa HOM05D001127 ORTHO05D002230 2.2e-07 59.7 43 72.1
Prupe.2G221500 Prunus persica HOM05D001127 ORTHO05D002230 2.2e-07 59.7 43 72.1
Rhsim03G0121200 Rhododendron simsii HOM05D001127 ORTHO05D002230 2.2e-07 59.7 43 72.1
Sp4g21600 Schrenkiella parvula HOM05D001127 ORTHO05D002230 2.2e-07 59.7 43 72.1
SpUn0018_0070 Schrenkiella parvula HOM05D001127 ORTHO05D002230 2.2e-07 59.7 43 72.1
Ca_11386_v3 Cicer arietinum L. HOM05D001127 ORTHO05D002230 2.8e-07 59.3 43 74.4
Duzib106G1592 Durio zibethinus HOM05D001127 ORTHO05D002230 2.8e-07 59.3 43 69.8
HanXRQChr07g0200951 Helianthus annuus HOM05D001127 ORTHO05D002230 2.8e-07 59.3 43 72.1
Nn2g10591 Nelumbo nucifera HOM05D001127 ORTHO05D002230 2.8e-07 59.3 43 69.8
TPR.G10432 Trifolium pratense HOM05D001127 ORTHO05D002230 2.8e-07 59.3 43 72.1
TAR624G0192 Trochodendron aralioides HOM05D001127 ORTHO05D012710 2.8e-07 59.3 40 75.0
Gohir.A10G208300 Gossypium hirsutum HOM05D001127 ORTHO05D002230 3.7e-07 58.9 43 69.8
Gohir.D10G216600 Gossypium hirsutum HOM05D001127 ORTHO05D002230 3.7e-07 58.9 43 69.8
Gorai.011G242200 Gossypium raimondii HOM05D001127 ORTHO05D002230 3.7e-07 58.9 43 69.8
Medtr1g116310 Medicago truncatula HOM05D001127 ORTHO05D002230 3.7e-07 58.9 43 72.1
QL08p057343 Quercus lobata HOM05D001127 ORTHO05D002230 3.7e-07 58.9 43 72.1
AUR62035999 Chenopodium quinoa HOM05D001127 ORTHO05D002230 4.8e-07 58.5 42 71.4
AUR62041621 Chenopodium quinoa HOM05D001127 ORTHO05D002230 4.8e-07 58.5 42 71.4
FvH4_7g20590 Fragaria vesca HOM05D001127 ORTHO05D002230 4.8e-07 58.5 46 65.2
FAN03G3433 Fragaria x ananassa HOM05D001127 ORTHO05D002230 4.8e-07 58.5 46 65.2
FAN06G2619 Fragaria x ananassa HOM05D001127 ORTHO05D002230 4.8e-07 58.5 46 65.2
FAN06G4441 Fragaria x ananassa HOM05D001127 ORTHO05D002230 4.8e-07 58.5 46 65.2
Oeu057251.2 Olea europaea HOM05D001127 ORTHO05D002230 4.8e-07 58.5 74 51.4
TWI15G1084 Tripterygium wilfordii HOM05D001127 ORTHO05D002230 4.8e-07 58.5 43 69.8
TAR369G1035 Trochodendron aralioides HOM05D001127 ORTHO05D002230 4.8e-07 58.5 43 69.8
Aqoxy4G03138 Aquilegia oxysepala HOM05D001127 ORTHO05D002230 6.3e-07 58.2 49 67.3
CANSAT56G3216 Cannabis sativa HOM05D001127 ORTHO05D002230 6.3e-07 58.2 43 72.1
CiPaw.01G278600 Carya illinoinensis HOM05D001127 ORTHO05D002230 6.3e-07 58.2 43 69.8
Lj1A927T61 Lonicera japonica HOM05D001127 ORTHO05D002230 6.3e-07 58.2 43 72.1
Lj1C928T14 Lonicera japonica HOM05D001127 ORTHO05D002230 6.3e-07 58.2 43 72.1
SalBow4G2749 Salvia bowleyana HOM05D001127 ORTHO05D002230 6.3e-07 58.2 42 73.8
Solyc04g009560.3 Solanum lycopersicum HOM05D001127 ORTHO05D002230 6.3e-07 58.2 46 67.4
vmacro07100 Vaccinium macrocarpon HOM05D001127 ORTHO05D002230 6.3e-07 58.2 43 69.8
Actinidia29193 Actinidia chinensis HOM05D001127 ORTHO05D002230 8.2e-07 57.8 42 73.8
ATR0594G169 Amborella trichopoda HOM05D001127 ORTHO05D002230 8.2e-07 57.8 50 66.0
CAN.G186.32 Capsicum annuum HOM05D001127 ORTHO05D002230 8.2e-07 57.8 48 66.7
Lj5g0024475 Lotus japonicus HOM05D001127 ORTHO05D002230 8.2e-07 57.8 43 74.4
Sc09g0007120 Simmondsia chinensis HOM05D001127 ORTHO05D002230 8.2e-07 57.8 43 72.1
SGA_v2.0_scaffold329G48854 Striga asiatica HOM05D001127 ORTHO05D002230 8.2e-07 57.8 43 69.8
HanXRQChr14g0460831 Helianthus annuus HOM05D001127 ORTHO05D002230 1.1e-06 57.4 43 69.8
Manes.10G040200 Manihot esculenta HOM05D001127 ORTHO05D002230 1.1e-06 57.4 43 67.4
RcHm_v2.0_Chr1g0364631 Rosa chinensis HOM05D001127 ORTHO05D002230 1.1e-06 57.4 43 67.4
Sabra10G0166100 Salix brachista HOM05D001127 ORTHO05D002230 1.1e-06 57.4 43 67.4
Cpa.g.sc114.59 Carica papaya HOM05D001127 ORTHO05D002230 1.4e-06 57.0 43 69.8
Cfa001570 Carpinus fangiana HOM05D001127 ORTHO05D002230 1.4e-06 57.0 43 67.4
CDE09G1289 Ceratophyllum demersum HOM05D001127 ORTHO05D002230 1.4e-06 57.0 49 61.2
Haze_16959 Corylus avellana HOM05D001127 ORTHO05D002230 1.4e-06 57.0 43 67.4
DCAR_006486 Daucus carota HOM05D001127 ORTHO05D002230 1.4e-06 57.0 43 69.8
MD01G1114800 Malus domestica HOM05D001127 ORTHO05D002230 1.4e-06 57.0 47 70.2
MD07G1182800 Malus domestica HOM05D001127 ORTHO05D002230 1.4e-06 57.0 47 70.2
Oeu017249.1 Olea europaea HOM05D001127 ORTHO05D002230 1.4e-06 57.0 43 69.8
GSVIVG01032641001 Vitis vinifera HOM05D001127 ORTHO05D002230 1.4e-06 57.0 43 67.4
ECA238G3032 Erigeron canadensis HOM05D001127 ORTHO05D002230 1.8e-06 56.6 43 69.8
Glyma.20G244400 Glycine max HOM05D001127 ORTHO05D002230 1.8e-06 56.6 48 68.8
Gohir.A05G299100 Gossypium hirsutum HOM05D001127 ORTHO05D002230 1.8e-06 56.6 46 67.4
Lsat_1_v5_gn_9_66141 Lactuca sativa HOM05D001127 ORTHO05D002230 1.8e-06 56.6 43 67.4
Nitab4.5_0000575g0050 Nicotiana tabacum HOM05D001127 ORTHO05D002230 1.8e-06 56.6 43 67.4
Nitab4.5_0002127g0020 Nicotiana tabacum HOM05D001127 ORTHO05D002230 1.8e-06 56.6 43 67.4
CARHR134030 Cardamine hirsuta HOM05D001127 ORTHO05D002230 2.4e-06 56.2 43 65.1
CiPaw.02G177900 Carya illinoinensis HOM05D001127 ORTHO05D002230 2.4e-06 56.2 43 67.4
Ca_02303_v3 Cicer arietinum L. HOM05D001127 ORTHO05D002230 2.4e-06 56.2 43 65.1
FAN01G0130 Fragaria x ananassa HOM05D001127 ORTHO05D002230 2.4e-06 56.2 44 65.9
FAN01G2826 Fragaria x ananassa HOM05D001127 ORTHO05D002230 2.4e-06 56.2 44 65.9
Gohir.D05G298800 Gossypium hirsutum HOM05D001127 ORTHO05D002230 2.4e-06 56.2 46 67.4
Gorai.009G316000 Gossypium raimondii HOM05D001127 ORTHO05D002230 2.4e-06 56.2 46 67.4
Lalb_Chr06g0164381 Lupinus albus HOM05D001127 ORTHO05D002230 2.4e-06 56.2 43 69.8
Oeu029109.1 Olea europaea HOM05D001127 ORTHO05D002230 2.4e-06 56.2 46 63.0
Psat6g240280 Pisum sativum HOM05D001127 ORTHO05D002230 2.4e-06 56.2 43 67.4
ClCG10G020690 Citrullus lanatus HOM05D001127 ORTHO05D002230 3.1e-06 55.8 47 63.8
Duzib093G0050 Durio zibethinus HOM05D001127 ORTHO05D002230 3.1e-06 55.8 59 54.2
FAN10G1953 Fragaria x ananassa HOM05D001127 ORTHO05D002230 3.1e-06 55.8 46 63.0
Hma1.2p1_0207F.1_g088050 Hydrangea macrophylla HOM05D001127 ORTHO05D002230 3.1e-06 55.8 43 65.1
Lj5g0015647 Lotus japonicus HOM05D001127 ORTHO05D002230 3.1e-06 55.8 57 52.6
Psat6g125000 Pisum sativum HOM05D001127 ORTHO05D002230 3.1e-06 55.8 50 60.0
Sopen04g019660 Solanum pennellii HOM05D001127 ORTHO05D012710 3.1e-06 55.8 43 67.4
arahy.Tifrunner.gnm1.ann1.7DZY9F Arachis hypogaea HOM05D001127 ORTHO05D002230 4.1e-06 55.5 50 58.0
CSS0014447 Camellia sinensis var. sinensis HOM05D001127 ORTHO05D002230 4.1e-06 55.5 43 67.4
CSS0018774 Camellia sinensis var. sinensis HOM05D001127 ORTHO05D002230 4.1e-06 55.5 43 67.4
CiPaw.09G184300 Carya illinoinensis HOM05D001127 ORTHO05D002230 4.1e-06 55.5 43 67.4
Migut.F01786 Erythranthe guttata HOM05D001127 ORTHO05D002230 4.1e-06 55.5 43 67.4
Migut.L01649 Erythranthe guttata HOM05D001127 ORTHO05D002230 4.1e-06 55.5 46 63.0
Lalb_Chr21g0307551 Lupinus albus HOM05D001127 ORTHO05D002230 4.1e-06 55.5 45 66.7
Nitab4.5_0004104g0040 Nicotiana tabacum HOM05D001127 ORTHO05D002230 4.1e-06 55.5 43 65.1
PSO384G1853 Papaver somniferum HOM05D001127 ORTHO05D002230 4.1e-06 55.5 57 59.6
PSO713G0001 Papaver somniferum HOM05D001127 ORTHO05D002230 4.1e-06 55.5 57 59.6
Peaxi162Scf00195g00836 Petunia axillaris HOM05D001127 ORTHO05D002230 4.1e-06 55.5 43 65.1
Sed0026750 Sechium edule HOM05D001127 ORTHO05D002230 4.1e-06 55.5 47 66.0
Hund19287 Selenicereus undatus HOM05D001127 ORTHO05D002230 4.1e-06 55.5 49 65.3
unitig_62.g23951 Utricularia gibba HOM05D001127 ORTHO05D002230 4.1e-06 55.5 43 67.4
unitig_899.g15224 Utricularia gibba HOM05D001127 ORTHO05D002230 4.1e-06 55.5 55 52.7
EL10Ac7g17260 Beta vulgaris HOM05D001127 ORTHO05D002230 5.3e-06 55.1 47 61.7
Eucgr.A01196 Eucalyptus grandis HOM05D001127 ORTHO05D002230 5.3e-06 55.1 40 67.5
TPR.G35658 Trifolium pratense HOM05D001127 ORTHO05D002230 5.3e-06 55.1 43 65.1
BcaC02g07336 Brassica carinata HOM05D001127 ORTHO05D002230 6.9e-06 54.7 52 57.7
BcaC02g07416 Brassica carinata HOM05D001127 ORTHO05D002230 6.9e-06 54.7 52 57.7
CANSAT80G0329 Cannabis sativa HOM05D001127 ORTHO05D002230 6.9e-06 54.7 47 63.8
MELO3C031022.2 Cucumis melo HOM05D001127 ORTHO05D002230 6.9e-06 54.7 43 67.4
CsaV3_3G035400 Cucumis sativus L. HOM05D001127 ORTHO05D002230 6.9e-06 54.7 43 67.4
Hma1.2p1_0111F.1_g053610 Hydrangea macrophylla HOM05D001127 ORTHO05D002230 6.9e-06 54.7 43 65.1
SGA_v2.0_scaffold94G28652 Striga asiatica HOM05D001127 ORTHO05D002230 6.9e-06 54.7 43 67.4
GSVIVG01025565001 Vitis vinifera HOM05D001127 ORTHO05D002230 6.9e-06 54.7 49 63.3
Nitab4.5_0000691g0200 Nicotiana tabacum HOM05D001127 ORTHO05D002230 9.1e-06 54.3 43 62.8
QL07p045698 Quercus lobata HOM05D001127 ORTHO05D002230 9.1e-06 54.3 43 62.8


User provided reference genes

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