Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 1.8e-23 111.7 56 100.0
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 3.1e-18 94.4 48 97.9
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 3.1e-18 94.4 48 97.9
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 5.8e-17 90.1 48 93.8
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 1.3e-13 79.0 47 85.1
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 5.6e-12 73.6 47 76.6
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 1.6e-11 72.0 49 73.5
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 1.6e-11 72.0 49 73.5
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 1.6e-11 72.0 49 73.5
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 3.6e-11 70.9 47 70.2
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 4.7e-11 70.5 49 73.5
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 4.7e-11 70.5 47 72.3
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 1.1e-10 69.3 49 71.4
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 1.1e-10 69.3 49 71.4
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 1.1e-10 69.3 47 72.3
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 1.1e-10 69.3 49 71.4
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 1.1e-10 69.3 49 71.4
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 1.4e-10 68.9 46 71.7
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 1.4e-10 68.9 49 67.3
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 1.4e-10 68.9 52 63.5
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 1.4e-10 68.9 47 70.2
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 1.4e-10 68.9 47 74.5
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 1.8e-10 68.6 47 72.3
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 2.3e-10 68.2 46 69.6
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 2.3e-10 68.2 49 69.4
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.3e-10 68.2 47 63.8
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 2.3e-10 68.2 47 70.2
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 3.1e-10 67.8 49 69.4
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 3.1e-10 67.8 45 71.1
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 3.1e-10 67.8 47 68.1
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 4.0e-10 67.4 49 69.4
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 4.0e-10 67.4 47 72.3
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 5.2e-10 67.0 47 68.1
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 5.2e-10 67.0 47 68.1
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 6.8e-10 66.6 47 70.2
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 6.8e-10 66.6 47 70.2
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 6.8e-10 66.6 47 70.2
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 6.8e-10 66.6 47 70.2
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 8.9e-10 66.2 47 66.0
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.5e-09 65.5 47 66.0
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 1.5e-09 65.5 47 66.0
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 1.5e-09 65.5 47 68.1
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 1.5e-09 65.5 47 66.0
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 2.0e-09 65.1 47 66.0
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 2.0e-09 65.1 47 68.1
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 2.0e-09 65.1 47 66.0
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 2.0e-09 65.1 47 72.3
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 2.6e-09 64.7 47 63.8
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 2.6e-09 64.7 47 66.0
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 2.6e-09 64.7 47 63.8
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 3.4e-09 64.3 47 68.1
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 3.4e-09 64.3 47 66.0
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 4.4e-09 63.9 47 63.8
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 4.4e-09 63.9 47 68.1
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 4.4e-09 63.9 47 68.1
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 5.8e-09 63.5 47 68.1
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 5.8e-09 63.5 47 66.0
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 5.8e-09 63.5 47 68.1
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 5.8e-09 63.5 47 70.2
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 5.8e-09 63.5 47 70.2
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 7.5e-09 63.2 47 57.4
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 9.8e-09 62.8 47 66.0
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 1.3e-08 62.4 47 63.8
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 1.3e-08 62.4 46 67.4
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 1.3e-08 62.4 46 67.4
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 1.3e-08 62.4 47 61.7
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.3e-08 62.4 47 68.1
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 1.7e-08 62.0 47 59.6
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 1.7e-08 62.0 47 63.8
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 1.7e-08 62.0 47 61.7
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 2.2e-08 61.6 47 61.7
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.2e-08 61.6 47 61.7
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 2.2e-08 61.6 47 66.0
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 2.2e-08 61.6 46 63.0
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 2.9e-08 61.2 46 67.4
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 3.7e-08 60.8 47 59.6
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 4.9e-08 60.5 45 66.7
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 4.9e-08 60.5 52 61.5
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 4.9e-08 60.5 46 60.9
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 4.9e-08 60.5 47 59.6
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 4.9e-08 60.5 47 59.6
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 6.4e-08 60.1 47 61.7
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 6.4e-08 60.1 47 63.8
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 8.3e-08 59.7 46 69.6
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 1.1e-07 59.3 47 61.7
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 1.1e-07 59.3 52 59.6
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 1.1e-07 59.3 47 63.8
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 2.4e-07 58.2 47 63.8
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 2.4e-07 58.2 47 63.8
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 2.4e-07 58.2 47 57.4
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 2.4e-07 58.2 47 55.3
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 2.4e-07 58.2 49 57.1
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 3.2e-07 57.8 49 63.3
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 3.2e-07 57.8 35 77.1
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 4.1e-07 57.4 46 63.0
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 4.1e-07 57.4 47 63.8
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.2e-06 55.8 35 74.3
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 1.2e-06 55.8 35 74.3
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 1.6e-06 55.5 47 55.3
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 3.5e-06 54.3 47 53.2
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 3.5e-06 54.3 47 57.4
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 7.8e-06 53.1 47 59.6


User provided reference genes

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