Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 6.9e-201 703.7 354 100.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.7e-199 699.1 354 99.4
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.0e-191 673.3 352 96.0
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 6.7e-188 660.6 354 94.1
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 9.1e-185 650.2 327 99.7
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.1e-169 598.2 346 86.7
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.5e-166 589.0 353 83.3
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.3e-166 588.6 345 85.8
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 7.3e-166 587.4 355 83.4
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 2.1e-165 585.9 353 82.7
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.8e-165 585.5 353 83.3
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.4e-164 583.2 339 84.7
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 8.9e-164 580.5 353 82.2
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 1.5e-163 579.7 350 83.1
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.6e-163 578.9 348 84.2
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.4e-163 578.6 353 82.2
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 4.4e-163 578.2 347 84.7
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 5.7e-163 577.8 353 82.2
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.7e-163 577.8 353 82.2
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.7e-162 576.2 345 82.9
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.4e-162 574.3 350 83.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.8e-161 572.8 345 82.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 2.4e-161 572.4 315 92.4
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 3.2e-161 572.0 349 83.7
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.2e-160 570.1 343 84.5
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 1.3e-159 566.6 354 82.8
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 1.7e-159 566.2 346 82.7
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.0e-159 565.5 347 82.4
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.1e-158 563.5 344 82.3
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-158 563.5 366 78.1
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 1.5e-158 563.1 346 83.2
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 4.3e-158 561.6 349 81.9
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.6e-157 559.7 352 81.2
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.1e-157 559.3 352 80.4
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 4.7e-157 558.1 354 78.8
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 6.8e-156 554.3 345 80.9
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 2.6e-155 552.4 345 80.3
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 2.6e-155 552.4 356 80.1
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.6e-155 552.4 352 80.1
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 8.3e-154 547.4 359 78.8
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 2.4e-153 545.8 382 74.3
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.2e-152 543.5 356 78.1
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.0e-152 541.2 322 84.5
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 6.0e-152 541.2 360 76.1
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 1.3e-151 540.0 322 84.5
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.7e-151 539.7 359 74.9
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 2.3e-151 539.3 352 78.1
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 6.6e-151 537.7 345 77.1
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 8.6e-151 537.3 345 76.8
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 9.5e-150 533.9 357 75.1
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 1.2e-149 533.5 327 81.0
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.2e-149 533.5 343 76.7
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.7e-149 531.6 353 75.4
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 8.1e-149 530.8 354 76.6
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.8e-148 529.6 345 76.2
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.3e-148 529.3 355 76.1
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 5.2e-148 528.1 348 78.2
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 5.2e-148 528.1 358 76.0
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 6.8e-148 527.7 348 77.9
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 8.9e-148 527.3 348 78.2
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 8.9e-148 527.3 347 77.8
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.2e-147 526.9 351 76.4
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.2e-147 526.9 354 75.7
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.5e-147 526.6 350 76.6
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.0e-147 526.2 354 76.6
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.4e-147 525.4 364 73.6
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 4.4e-147 525.0 354 76.3
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.9e-145 519.6 377 71.4
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.4e-145 519.2 333 77.2
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.1e-144 516.2 360 73.6
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 7.8e-144 514.2 322 79.5
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.8e-144 514.2 328 78.7
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 2.3e-143 512.7 328 78.0
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 3.0e-143 512.3 351 74.9
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.0e-143 512.3 345 75.9
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 5.1e-143 511.5 353 75.4
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 6.6e-143 511.1 346 75.1
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.9e-142 509.6 350 74.6
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.4e-140 503.4 325 78.5
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 2.4e-140 502.7 340 73.5
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 2.4e-140 502.7 330 76.1
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 3.1e-140 502.3 329 75.4
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 4.0e-140 501.9 333 75.1
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 4.0e-140 501.9 331 74.3
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 6.8e-140 501.1 405 65.9
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 8.9e-140 500.7 357 70.3
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.2e-139 500.4 351 73.2
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.5e-139 500.0 322 77.3
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.4e-139 498.4 342 73.4
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.2e-138 496.1 330 76.4
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 8.4e-138 494.2 329 76.9
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.1e-137 491.1 342 73.4
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 7.1e-137 491.1 322 73.3
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 7.8e-136 487.6 317 75.1
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.0e-135 487.3 326 75.8
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.3e-135 486.9 318 74.8
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.3e-135 486.1 317 75.1
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 3.0e-135 485.7 330 74.5
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.0e-135 485.7 317 74.4
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 5.1e-135 485.0 318 74.5
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 5.1e-135 485.0 318 74.5
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 6.6e-135 484.6 317 74.1
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.9e-134 483.0 317 74.1
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.5e-134 482.6 340 75.0
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 2.5e-134 482.6 317 74.4
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.2e-133 480.3 318 73.9
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 1.2e-133 480.3 317 73.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 1.6e-133 479.9 318 73.9
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 8.1e-133 477.6 362 69.6
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 2.4e-132 476.1 359 67.7
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 3.1e-132 475.7 346 71.4
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.2e-132 474.9 348 72.1
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 6.9e-132 474.6 307 77.9
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 6.9e-132 474.6 349 70.5
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 2.6e-131 472.6 370 65.4
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 7.6e-131 471.1 344 70.9
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 4.9e-130 468.4 273 87.2
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 4.9e-130 468.4 305 77.7
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.4e-129 466.1 321 74.1
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.2e-129 465.3 318 71.4
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 1.6e-128 463.4 324 71.3
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.6e-128 463.4 307 76.2
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 6.6e-127 458.0 344 69.8
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 8.7e-127 457.6 273 84.6
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.1e-126 457.2 322 72.0
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 9.6e-126 454.1 331 69.5
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.7e-120 436.0 350 66.0
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.3e-119 433.7 283 79.2
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 3.9e-119 432.2 536 47.8
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 2.8e-117 426.0 266 82.3
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 8.2e-109 397.9 319 65.2
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 2.9e-98 362.8 344 56.1
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.1e-97 360.9 334 55.4
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 7.2e-97 358.2 226 80.1
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 1.5e-94 350.5 242 71.1
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 8.2e-93 344.7 228 76.3
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.8e-92 343.6 206 84.0
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 2.9e-90 336.3 279 64.9
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 3.2e-89 332.8 229 75.1
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 7.9e-88 328.2 292 57.5
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 9.7e-86 321.2 204 80.9
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.5e-83 313.9 267 63.3
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.3e-82 310.8 188 83.5
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 6.3e-77 292.0 162 89.5
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 5.3e-68 262.3 372 42.5
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 3.8e-66 256.1 184 68.5
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 4.4e-62 242.7 185 70.3
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.8e-60 237.3 154 74.7
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.0e-60 235.3 171 71.3
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 2.7e-59 233.4 142 78.2
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 4.2e-57 226.1 211 58.8
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 6.8e-55 218.8 269 48.3
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 9.5e-49 198.4 329 41.0
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 4.4e-46 189.5 202 55.4
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 7.5e-38 162.2 120 72.5
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.7e-32 142.9 152 50.7
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 2.2e-29 134.0 287 35.2
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.1e-27 127.5 259 36.3
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 8.6e-26 122.1 71 84.5
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.4e-23 114.8 334 32.9
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.2e-22 111.7 72 75.0
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.5e-22 111.3 213 37.6
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.0e-18 98.6 57 82.5
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.9e-18 96.7 60 81.7
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 6.6e-18 95.9 86 58.1
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.6e-16 91.3 65 66.2
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 4.9e-13 79.7 77 51.9
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 4.6e-11 73.2 49 67.3
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 5.6e-09 66.2 60 60.0
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 9.0e-07 58.9 35 68.6
Gohir.A08G142233 Gossypium hirsutum HOM05D015873 ORTHO05D217415 7.6e-06 55.8 32 81.2
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 7.6e-06 55.8 51 52.9


User provided reference genes

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