Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.0e-240 836.3 410 100.0
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.8e-224 782.3 385 99.5
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.5e-223 776.9 385 98.7
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 5.4e-213 744.2 385 94.0
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 5.4e-213 744.2 385 94.3
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.7e-211 739.2 385 93.8
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.7e-211 739.2 385 93.8
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.5e-210 736.1 385 93.2
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.9e-210 735.7 385 92.2
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 9.5e-210 733.4 385 91.9
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.5e-207 726.1 383 91.6
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 3.4e-207 724.9 383 91.6
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 9.8e-207 723.4 383 90.6
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 9.8e-207 723.4 383 91.4
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 2.2e-206 722.2 383 91.4
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 3.7e-206 721.5 381 91.9
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 4.9e-206 721.1 383 90.9
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 4.9e-206 721.1 384 90.9
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 6.4e-206 720.7 383 91.1
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 1.4e-205 719.5 383 89.8
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 3.2e-205 718.4 383 89.8
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 3.2e-205 718.4 386 90.9
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 3.2e-205 718.4 383 90.6
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 7.0e-205 717.2 385 89.9
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 7.0e-205 717.2 385 89.9
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 9.2e-205 716.8 383 90.3
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.2e-204 716.5 381 90.8
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.2e-204 716.5 381 90.6
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.2e-204 716.5 383 90.6
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 2.0e-204 715.7 383 90.1
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 2.0e-204 715.7 385 89.9
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.0e-204 715.7 383 90.1
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 2.7e-204 715.3 381 90.6
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.7e-204 715.3 383 90.1
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 3.5e-204 714.9 383 89.8
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.5e-204 714.9 383 90.3
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 6.0e-204 714.1 381 89.5
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 6.0e-204 714.1 383 89.6
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 6.0e-204 714.1 383 90.1
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 6.0e-204 714.1 383 89.3
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 7.8e-204 713.8 381 90.0
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 7.8e-204 713.8 383 89.8
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 1.0e-203 713.4 383 89.8
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.7e-203 712.6 379 91.0
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 3.0e-203 711.8 383 90.3
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 3.9e-203 711.4 383 89.6
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 5.0e-203 711.1 381 89.0
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 5.0e-203 711.1 383 89.3
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 6.6e-203 710.7 383 89.6
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.1e-202 709.9 385 89.9
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 1.1e-202 709.9 383 89.0
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.1e-202 709.9 383 89.8
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.9e-202 709.1 381 89.2
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.9e-202 709.1 386 89.9
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.9e-202 709.1 383 88.8
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.9e-202 709.1 399 87.5
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.5e-202 708.8 383 89.3
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 2.5e-202 708.8 383 88.8
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 2.5e-202 708.8 383 89.0
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 4.3e-202 708.0 383 89.3
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 4.3e-202 708.0 383 89.3
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 7.3e-202 707.2 383 89.0
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 7.3e-202 707.2 383 89.3
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 7.3e-202 707.2 383 88.8
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.2e-201 706.4 383 88.8
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 1.2e-201 706.4 383 88.8
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.2e-201 706.4 381 89.2
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 1.6e-201 706.1 383 88.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 2.1e-201 705.7 383 88.8
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.1e-201 705.7 381 89.0
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.1e-201 705.7 383 89.0
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 3.6e-201 704.9 383 89.0
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 6.2e-201 704.1 384 88.8
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 8.0e-201 703.7 381 89.0
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.1e-200 703.4 383 88.8
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.1e-200 703.4 383 89.0
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 1.1e-200 703.4 383 89.0
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 1.4e-200 703.0 383 88.8
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 2.3e-200 702.2 383 88.5
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 2.3e-200 702.2 383 88.5
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 3.1e-200 701.8 382 88.7
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 5.2e-200 701.0 381 87.7
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 6.8e-200 700.7 381 89.5
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 8.9e-200 700.3 381 87.7
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.2e-199 699.9 380 88.4
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 2.6e-199 698.7 382 90.1
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 4.4e-199 698.0 384 88.3
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 4.4e-199 698.0 384 88.3
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 4.4e-199 698.0 384 88.8
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.2e-198 695.7 425 81.6
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.9e-198 695.3 381 87.4
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 8.3e-198 693.7 398 86.2
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 8.3e-198 693.7 381 87.1
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.1e-197 693.3 426 81.0
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.1e-197 693.3 383 86.9
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 7.0e-197 690.6 386 86.0
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.2e-196 689.9 450 77.8
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.6e-196 689.5 383 86.2
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.1e-196 689.1 383 86.7
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 2.7e-196 688.7 392 85.5
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 2.7e-196 688.7 385 86.5
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.3e-195 686.4 383 86.4
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.3e-195 686.4 385 85.7
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.3e-195 686.4 385 85.7
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.3e-195 686.4 385 85.2
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.7e-195 686.0 385 85.2
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 5.1e-195 684.5 383 85.4
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 8.6e-195 683.7 381 84.8
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.1e-194 683.3 384 84.4
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.5e-194 682.9 384 84.4
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 5.6e-194 681.0 410 82.2
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 7.3e-194 680.6 382 85.6
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.1e-193 679.1 385 84.9
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.3e-187 659.8 426 75.6
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 1.1e-186 656.8 384 84.9
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 2.1e-185 652.5 492 68.9
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.4e-184 649.8 333 94.3
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 3.8e-182 641.7 394 79.7
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 3.2e-181 638.6 385 80.3
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.5e-178 629.8 333 90.7
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 4.8e-177 624.8 380 79.7
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.1e-176 623.6 335 89.9
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.3e-174 616.7 379 78.4
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.9e-173 612.8 385 76.1
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 3.3e-170 602.1 382 79.6
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.9e-166 588.2 317 88.3
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 3.9e-163 578.6 380 73.7
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 5.1e-163 578.2 388 71.4
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.8e-161 572.4 386 71.0
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.4e-160 570.1 360 73.1
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.3e-153 547.0 383 72.8
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.3e-153 547.0 376 70.2
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.7e-148 529.3 318 80.8
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 6.7e-147 524.6 383 71.0
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.5e-143 511.9 322 80.1
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.4e-131 473.8 377 62.3
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 2.0e-130 469.9 245 92.7
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 1.5e-127 460.3 255 86.7
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 2.9e-118 429.5 238 87.8
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 2.7e-116 422.9 347 60.8
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 5.7e-114 415.2 388 55.2
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.3e-113 414.1 227 86.8
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.9e-109 400.2 236 82.2
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.7e-86 323.9 171 91.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 4.9e-73 279.3 400 41.8
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 5.2e-67 259.2 362 43.1
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.5e-61 241.1 157 75.2
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 4.2e-56 223.0 157 69.4
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 5.4e-56 222.6 124 83.9
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 6.4e-49 199.1 130 78.5
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 3.9e-46 189.9 121 73.6
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 3.9e-46 189.9 136 67.6
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.7e-20 104.8 128 49.2
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 4.8e-20 103.2 58 79.3
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 5.5e-08 63.2 315 22.5


User provided reference genes

Program Settings