Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 2.0e-127 459.1 242 100.0
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 2.8e-124 448.7 242 97.9
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.2e-122 443.4 242 96.3
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 1.6e-103 379.8 244 80.7
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 4.7e-100 368.2 243 81.5
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 1.4e-99 366.7 244 80.3
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 2.0e-98 362.8 243 82.7
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 3.7e-97 358.6 243 79.4
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.8e-91 339.7 240 76.2
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 9.9e-90 334.0 244 74.6
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 5.3e-67 258.5 240 60.4
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 3.8e-65 252.3 242 57.9
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 4.2e-64 248.8 242 56.6
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 9.3e-64 247.7 240 57.5
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 4.6e-63 245.4 243 60.1
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 1.0e-62 244.2 241 62.7
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 3.0e-62 242.7 242 59.1
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.9e-62 242.3 244 61.5
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 5.7e-61 238.4 243 60.1
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 5.7e-61 238.4 244 55.3
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 1.6e-60 236.9 245 59.2
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 4.8e-60 235.3 240 58.8
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 8.2e-60 234.6 241 56.4
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 8.2e-60 234.6 243 54.3
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.1e-59 234.2 237 59.1
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 4.1e-59 232.3 242 55.8
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 1.6e-55 220.3 240 53.3
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 1.6e-55 220.3 240 53.3
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 6.1e-55 218.4 238 55.9
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 1.5e-53 213.8 240 53.3
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 3.3e-53 212.6 241 53.9
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 4.8e-52 208.8 246 53.7
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 4.1e-51 205.7 244 53.3
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 2.0e-50 203.4 243 53.1
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 2.2e-49 199.9 247 49.8
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 7.2e-48 194.9 243 51.9
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 9.4e-48 194.5 243 51.9
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 1.2e-47 194.1 243 48.6
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.6e-47 193.7 243 51.4
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 2.7e-47 193.0 240 51.2
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 6.1e-47 191.8 219 53.0
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 3.0e-46 189.5 240 50.8
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.1e-45 187.6 242 49.2
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 4.3e-45 185.7 209 56.5
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 5.7e-45 185.3 244 52.5
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 9.7e-45 184.5 244 49.2
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 1.3e-44 184.1 242 44.6
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 2.8e-44 183.0 239 44.8
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 2.8e-44 183.0 244 48.4
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 3.7e-44 182.6 238 46.2
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 3.7e-44 182.6 241 48.1
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 1.4e-43 180.6 236 48.3
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 9.1e-43 177.9 241 46.9
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 9.1e-43 177.9 218 47.2
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 1.5e-42 177.2 243 45.3
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 2.0e-42 176.8 239 47.3
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 3.4e-42 176.0 241 48.5
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 5.9e-42 175.3 218 47.2
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 5.9e-42 175.3 244 46.3
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 8.5e-41 171.4 239 47.3
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 1.1e-40 171.0 245 46.5
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 1.9e-40 170.2 261 43.7
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 5.5e-40 168.7 240 47.5
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 7.2e-40 168.3 220 46.8
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 2.1e-39 166.8 216 49.1
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 4.7e-39 165.6 237 46.4
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 4.7e-39 165.6 202 51.0
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 4.7e-39 165.6 243 45.7
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 4.7e-39 165.6 238 45.4
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 6.1e-39 165.2 202 51.0
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 3.9e-38 162.5 245 43.7
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 6.7e-38 161.8 242 46.7
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 8.8e-38 161.4 242 45.0
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 1.1e-37 161.0 243 45.7
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 4.8e-36 155.6 238 46.2
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 1.6e-34 150.6 245 45.3
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 2.0e-34 150.2 261 44.8
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 2.6e-34 149.8 239 45.6
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 4.5e-34 149.1 242 43.4
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.7e-33 147.1 217 45.6
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 3.8e-33 146.0 245 44.1
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 1.5e-32 144.1 237 43.9
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 5.5e-32 142.1 242 40.9
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 4.0e-30 136.0 223 42.6
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 5.2e-30 135.6 220 46.8
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.6e-29 133.3 203 45.8
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 2.8e-28 129.8 214 46.3
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.8e-28 129.8 220 43.6
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 3.5e-26 122.9 241 39.8
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 4.5e-26 122.5 242 36.8
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 4.5e-26 122.5 242 36.8
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 4.5e-26 122.5 206 38.3
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 7.7e-26 121.7 220 44.1
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 7.7e-26 121.7 220 44.1
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 1.7e-25 120.6 241 38.2
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 1.7e-25 120.6 257 39.7
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 3.8e-25 119.4 242 36.4
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 3.8e-25 119.4 129 50.4
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 8.5e-25 118.2 246 37.8
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.9e-24 117.1 209 42.1
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 4.2e-24 115.9 205 44.4
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 5.5e-24 115.5 166 47.6
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 7.2e-24 115.2 241 35.7
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 7.2e-24 115.2 241 35.7
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 9.4e-24 114.8 260 35.0
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 1.2e-23 114.4 208 43.8
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 4.7e-23 112.5 216 42.1
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 4.7e-23 112.5 247 36.0
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 5.2e-22 109.0 204 38.7
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 5.2e-22 109.0 206 39.8
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 9.8e-21 104.8 243 34.6
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 8.3e-20 101.7 211 38.4
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 1.2e-18 97.8 236 33.5
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 1.3e-17 94.4 102 58.8
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 1.1e-16 91.3 127 44.1
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 1.2e-15 87.8 211 32.2
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 1.4e-14 84.3 189 38.6
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 5.2e-14 82.4 209 40.2
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 3.7e-12 76.3 196 33.2
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 1.8e-11 73.9 170 43.5
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 7.0e-11 72.0 101 43.6
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 7.0e-11 72.0 196 37.2
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 3.5e-10 69.7 142 40.8
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 6.6e-09 65.5 73 45.2
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 2.5e-08 63.5 95 35.8
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 2.5e-08 63.5 110 47.3
THA.LOC104806804 Tarenaya hassleriana HOM05D001755 ORTHO05D001665 2.1e-07 60.5 283 24.0
Migut.L01931 Erythranthe guttata HOM05D001755 ORTHO05D001665 3.0e-06 56.6 198 26.8
Duzib052G1081 Durio zibethinus HOM05D001755 ORTHO05D001665 5.2e-06 55.8 94 35.1


User provided reference genes

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